Rroxscaffold_4G00301510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000347
Physical Location & Seq
Reverse (-)
21855620 .. 21858065
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301510.1

Sequence Viewer

Length: 930 bp
ATGTGGCGGTGGTTCGACCTCAGGCTTGAAGCTCCCAAAGCGATTTCACTGAAGGAGGCCGTCGGAGCCATGGCTCAAGTAGCTTTAACCGACATAGAGCTTGACGGCAGCCCCCAAAAGGCCAACCTCTGCGTCACTCCGGAGATGGTCGCACTGGTTTCCAAAACCCAGGCTACTGATGCCGTCAGCGTGCTGCTGATGCCGAAACCGTTGATGACGTGCTTTAAGTGCTACGAAAGCCGGAATCTGCAGTTCAATCTGGAAATCCTCCACCGCCAATTGCAGCTGAACAATCGGCACGCGCTCATTCTTTATGGTGAGGTAGAAAGTAAGGATATGCTTGGCTATGAAGATCCTGATGAACCGGGTGATCATGTGATTTTCTATGAGCTTGAGAATGGTCCTGACAGGTTGATTCACTCCTTTAAAATGCCACTGCTTTCATGGAATCGGGATGCGATGGACCTAAGATTCTTAGCAAATCAATATCCAGTGCGCCTTGGCTTGTCTTCAGCGAGATTTTGTGAGCTTATCACTGATATGGATTCTTTTGGGTGTACAGTTCATGCCACACTGTTCGAAAATGAAGTTCTTTTCCGTGTAGTGAATTACGAGCGTGTCTTCCCAACAGAGTTGCTGATATTCATTCTTGTAGCATCATATGAATCTAGCAAACCCTCAAGATGCGAGACTAAGAGTGATCATGGATTTCCGTGTGCGTTGAAGTTTGATATCCAGCACATAAAGGCGCTTCTCAATGCCGCTACTTTGTCAGAGATGATATGGATATGGTCCTCGGATAAGTTCACCTTGCTCAGTTTCCCAATTGATGGCCTGGTTTTACATGAGGAAGAAATAGATTTGAATACAGTGTTACTGGCAGAGTATACTGACTGTGATAGAAGTTCTGTTTCATCAGTTCAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

35.22

Weight (kDa)

4.84

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 830
AccI GTMKAC 1 cut(s) 887
AccII CGCG 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 3 cut(s) 7, 274, 762
AclWI GGATC 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 71, 495
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 2 cut(s) 118, 830
AgsI TTSAA 4 cut(s) 29, 256, 724, 865
AjiI CACGTC 1 cut(s) 219
AjnI CCWGG 2 cut(s) 168, 834
AluBI AGCT 6 cut(s) 32, 83, 100, 286, 391, 529
AluI AGCT 6 cut(s) 32, 83, 100, 286, 391, 529
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 3 cut(s) 57, 120, 832
ApeKI GCWGC 3 cut(s) 108, 193, 283
AspLEI GCGC 3 cut(s) 304, 498, 751
AspS9I GGNCC 3 cut(s) 401, 463, 792
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 3 cut(s) 329, 380, 799
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 3 cut(s) 401, 463, 792
AxyI CCTNAGG 1 cut(s) 20
BbsI GAAGAC 2 cut(s) 501, 613
BbvI GCAGC 3 cut(s) 120, 180, 295
BccI CCATC 3 cut(s) 139, 454, 824
BceAI ACGGC 3 cut(s) 44, 121, 167
BciT130I CCWGG 2 cut(s) 170, 836
BclI TGATCA 2 cut(s) 370, 700
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 1 cut(s) 248
BfoI RGCGCY 1 cut(s) 752
BisI GCNGC 4 cut(s) 109, 194, 284, 762
BlsI GCNGC 4 cut(s) 110, 195, 285, 763
Bme1390I CCNGG 3 cut(s) 170, 366, 836
Bme18I GGWCC 3 cut(s) 401, 463, 792
BmgBI CACGTC 1 cut(s) 219
BmgT120I GGNCC 3 cut(s) 401, 463, 792
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 3 cut(s) 170, 366, 836
BmsI GCATC 5 cut(s) 169, 189, 445, 665, 674
BpiI GAAGAC 2 cut(s) 501, 613
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 3 cut(s) 60, 413, 664
BpuMI CCSGG 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 69, 168, 499, 795
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 830
Bse1I ACTGG 3 cut(s) 159, 491, 882
Bse21I CCTNAGG 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 2 cut(s) 170, 836
BseDI CCNNGG 4 cut(s) 69, 168, 499, 795
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 118, 830
BseMII CTCAG 2 cut(s) 34, 829
BseNI ACTGG 3 cut(s) 159, 491, 882
BseXI GCAGC 3 cut(s) 120, 180, 295
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 3 cut(s) 59, 122, 834
BsiSI CCGG 3 cut(s) 140, 241, 365
BslI CCNNNNNNNGG 2 cut(s) 118, 830
BsmAI GTCTC 1 cut(s) 683
BsnI GGCC 3 cut(s) 59, 122, 834
Bsp119I TTCGAA 1 cut(s) 579
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 557
Bsp143I GATC 3 cut(s) 352, 370, 700
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 3 cut(s) 7, 274, 762
BspANI GGCC 3 cut(s) 59, 122, 834
BspCNI CTCAG 2 cut(s) 33, 828
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 1 cut(s) 347
BspT104I TTCGAA 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 557
BsrI ACTGG 3 cut(s) 159, 491, 882
BssECI CCNNGG 4 cut(s) 69, 168, 499, 795
BssMI GATC 3 cut(s) 352, 370, 700
BssNAI GTATAC 1 cut(s) 888
BssT1I CCWWGG 2 cut(s) 69, 499
Bst1107I GTATAC 1 cut(s) 888
Bst2UI CCWGG 2 cut(s) 170, 836
Bst4CI ACNGT 5 cut(s) 210, 562, 576, 871, 896
BstAUI TGTACA 1 cut(s) 557
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 191, 300
BstDEI CTNAG 5 cut(s) 20, 467, 475, 693, 815
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 752
BstHHI GCGC 3 cut(s) 304, 498, 751
BstKTI GATC 3 cut(s) 355, 373, 703
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 3 cut(s) 352, 370, 700
BstMWI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
BstNI CCWGG 2 cut(s) 170, 836
BstSCI CCNGG 3 cut(s) 168, 364, 834
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 120, 180, 295
BstV2I GAAGAC 2 cut(s) 501, 613
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BstZ17I GTATAC 1 cut(s) 888
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 3 cut(s) 59, 122, 834
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 473
BtrI CACGTC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 7 cut(s) 47, 152, 434, 498, 534, 572, 876
Cac8I GCNNGC 2 cut(s) 191, 300
CfoI GCGC 3 cut(s) 304, 498, 751
Cfr13I GGNCC 3 cut(s) 401, 463, 792
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 558
CviAII CATG 6 cut(s) 70, 374, 444, 566, 704, 845
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 5 cut(s) 20, 467, 475, 693, 815
DpnI GATC 3 cut(s) 354, 372, 702
DpnII GATC 3 cut(s) 352, 370, 700
DraI TTTAAA 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 69, 499
Eco32I GATATC 1 cut(s) 733
Eco47I GGWCC 3 cut(s) 401, 463, 792
Eco57I CTGAAG 2 cut(s) 71, 495
Eco81I CCTNAGG 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 168, 834
EcoRV GATATC 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 69, 499
ErhI CCWWGG 2 cut(s) 69, 499
FaeI CATG 6 cut(s) 73, 377, 447, 569, 707, 848
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FatI CATG 6 cut(s) 69, 373, 443, 565, 703, 844
FauNDI CATATG 1 cut(s) 661
FbaI TGATCA 2 cut(s) 370, 700
FblI GTMKAC 1 cut(s) 887
Fnu4HI GCNGC 4 cut(s) 109, 194, 284, 762
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 4 cut(s) 109, 194, 284, 762
FspBI CTAG 1 cut(s) 669
GlaI GCGC 3 cut(s) 303, 497, 750
GluI GCNGC 4 cut(s) 109, 194, 284, 762
HaeII RGCGCY 1 cut(s) 752
HaeIII GGCC 3 cut(s) 59, 122, 834
HapII CCGG 3 cut(s) 140, 241, 365
HgaI GACGC 1 cut(s) 121
HhaI GCGC 3 cut(s) 304, 498, 751
Hin1II CATG 6 cut(s) 73, 377, 447, 569, 707, 848
Hin6I GCGC 3 cut(s) 302, 496, 749
HinP1I GCGC 3 cut(s) 302, 496, 749
HinfI GANTC 6 cut(s) 244, 415, 448, 471, 545, 665
HpaII CCGG 3 cut(s) 140, 241, 365
HphI GGTGA 3 cut(s) 329, 380, 799
Hpy166II GTNNAC 3 cut(s) 558, 807, 888
Hpy188I TCNGA 3 cut(s) 65, 775, 799
Hpy188III TCNNGA 7 cut(s) 140, 260, 356, 404, 452, 681, 923
Hpy8I GTNNAC 3 cut(s) 558, 807, 888
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 5 cut(s) 210, 562, 576, 871, 896
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 250, 283
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
HpyF3I CTNAG 5 cut(s) 20, 467, 475, 693, 815
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 6 cut(s) 73, 377, 447, 569, 707, 848
HspAI GCGC 3 cut(s) 302, 496, 749
Kpn2I TCCGGA 1 cut(s) 139
Ksp22I TGATCA 2 cut(s) 370, 700
Kzo9I GATC 3 cut(s) 352, 370, 700
LmnI GCTCC 2 cut(s) 37, 65
Lsp1109I GCAGC 3 cut(s) 120, 180, 295
LweI GCATC 5 cut(s) 169, 189, 445, 665, 674
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 133, 873
MalI GATC 3 cut(s) 354, 372, 702
MboI GATC 3 cut(s) 352, 370, 700
MboII GAAGA 4 cut(s) 362, 501, 613, 863
MfeI CAATTG 2 cut(s) 278, 825
MflI RGATCY 1 cut(s) 352
MluCI AATT 3 cut(s) 278, 607, 825
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 8 cut(s) 29, 49, 137, 278, 313, 688, 805, 841
MroI TCCGGA 1 cut(s) 139
MseI TTAA 3 cut(s) 86, 225, 426
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 3 cut(s) 140, 241, 365
MspR9I CCNGG 3 cut(s) 170, 366, 836
MunI CAATTG 2 cut(s) 278, 825
MvaI CCWGG 2 cut(s) 170, 836
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
NciI CCSGG 1 cut(s) 366
NcoI CCATGG 1 cut(s) 69
NdeI CATATG 1 cut(s) 661
NdeII GATC 3 cut(s) 352, 370, 700
NlaIII CATG 6 cut(s) 73, 377, 447, 569, 707, 848
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 579
PfeI GAWTC 6 cut(s) 244, 415, 448, 471, 545, 665
PflMI CCANNNNNTGG 1 cut(s) 830
PkrI GCNGC 4 cut(s) 110, 195, 285, 763
Psp6I CCWGG 2 cut(s) 168, 834
PspGI CCWGG 2 cut(s) 168, 834
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 401, 463, 792
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 3 cut(s) 86, 225, 426
SatI GCNGC 4 cut(s) 109, 194, 284, 762
Sau3AI GATC 3 cut(s) 352, 370, 700
Sau96I GGNCC 3 cut(s) 401, 463, 792
ScrFI CCNGG 3 cut(s) 170, 366, 836
SfaNI GCATC 5 cut(s) 169, 189, 445, 665, 674
SfcI CTRYAG 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 3 cut(s) 401, 463, 792
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 3 cut(s) 75, 392, 679
SmoI CTYRAG 3 cut(s) 75, 392, 679
Sse9I AATT 3 cut(s) 278, 607, 825
SsiI CCGC 3 cut(s) 7, 274, 762
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 3 cut(s) 168, 364, 834
StyI CCWWGG 2 cut(s) 69, 499
TaaI ACNGT 5 cut(s) 210, 562, 576, 871, 896
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 15, 579
TasI AATT 3 cut(s) 278, 607, 825
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 6 cut(s) 244, 415, 448, 471, 545, 665
Tru1I TTAA 3 cut(s) 86, 225, 426
Tru9I TTAA 3 cut(s) 86, 225, 426
TscAI CASTG 7 cut(s) 54, 159, 441, 498, 541, 579, 876
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 108, 193, 283
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 8 cut(s) 363, 375, 432, 554, 600, 634, 678, 903
TspGWI ACGGA 2 cut(s) 587, 702
TspRI CASTG 7 cut(s) 54, 159, 441, 498, 541, 579, 876
Van91I CCANNNNNTGG 1 cut(s) 830
VpaK11BI GGWCC 3 cut(s) 401, 463, 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 887
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.