Rh1BG222700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000347
Physical Location & Seq
Reverse (-)
34174698 .. 34176773
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG222700.1

Sequence Viewer

Length: 798 bp
ATGCCGCGGTGGTTCGACCTCAAGCTTGATCGGCGCAAAGCGATTCTGCTGAAGAAGGCCGTCGGAGCCATGGCTCAAGTAGCCTTTACGGACAGAGAGCTCGCCGGCCGCCCCCAAAACGCCGACCTCTGCGTCACTCCGGAGATCGTCGCACTGGTTTCCAAAACCAAGTCTACTGATGCCGTCAGCGCGCTGATGATGCCGGAACTGTTGATGTCGAGCTTCGAGTGCTACGAAAGCCGGAACCTGCAGTTCAATCTGCACAGCTTGCTTTGCCTATTGGAGCAGAACACTGAGTTTGCGGTCACTCTTTATGGCGAGGTAGAAGATGAGGATGTGATTTGGTATGAGCTTGAGGAAGGTTTTCGCACGATTTACACCTCTACAATGCGGCTGGATTCTTGGACTAAGAATAAGATGGACCTGGGTTTCTTGGTATATAAATATCCAGTGCGCCTCGGCTTGTCTTCAAAGAGCTTTTGCGACCTTATCACTGATATGGGTTCTCATGGGTGCACAGTTCATGCCACACTGTTCAAAGATGTAGTTGTTTTCCGTGTAGTGAATTACGAGCTTGTCTTCCCAACAGAGCCCTTGATTTGCGAGACTCAGAGTGATCGTGGATTTCCTTGTGTGTTGAAGTTTGATATCCAGCACAAGAGCGCGCTTCTCAATGCCGCTACGTTGTCAGAGATGATATGGATATGGTTCTCAGATTCGTTCACCATGCTCAATTTCCCAATTCGTGGCCTGGGAAAACTTGTCTTTGGCCATCATAACTTTATGGTGACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.3

Weight (kDa)

5.56

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 1 cut(s) 173
AccII CGCG 3 cut(s) 7, 191, 665
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 6 cut(s) 5, 7, 109, 302, 391, 678
AcoI YGGCCR 2 cut(s) 106, 769
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 746
AgsI TTSAA 4 cut(s) 256, 471, 538, 640
AjnI CCWGG 2 cut(s) 423, 750
AluBI AGCT 7 cut(s) 25, 100, 222, 267, 352, 477, 574
AluI AGCT 7 cut(s) 25, 100, 222, 267, 352, 477, 574
Alw21I GWGCWC 2 cut(s) 102, 518
Alw26I GTCTC 1 cut(s) 599
Alw44I GTGCAC 1 cut(s) 514
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 4 cut(s) 57, 106, 748, 769
ApaLI GTGCAC 1 cut(s) 514
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 6 cut(s) 36, 191, 193, 456, 665, 667
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 715
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 518
BalI TGGCCA 1 cut(s) 771
BanII GRGCYC 2 cut(s) 102, 594
BbsI GAAGAC 2 cut(s) 459, 571
Bbv12I GWGCWC 2 cut(s) 102, 518
BccI CCATC 2 cut(s) 412, 780
BceAI ACGGC 2 cut(s) 44, 167
BciT130I CCWGG 2 cut(s) 425, 752
BcoDI GTCTC 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 4 cut(s) 5, 109, 392, 678
BlsI GCNGC 4 cut(s) 6, 110, 393, 679
Bme1390I CCNGG 2 cut(s) 425, 752
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 2 cut(s) 67, 245
BmrFI CCNGG 2 cut(s) 425, 752
BmsI GCATC 2 cut(s) 169, 189
BpiI GAAGAC 2 cut(s) 459, 571
BpuEI CTTGAG 3 cut(s) 5, 60, 374
BsaJI CCNNGG 5 cut(s) 5, 69, 424, 457, 751
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 159, 449
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 2 cut(s) 425, 752
BseDI CCNNGG 5 cut(s) 5, 69, 424, 457, 751
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMII CTCAG 3 cut(s) 285, 623, 726
BseNI ACTGG 2 cut(s) 159, 449
BsePI GCGCGC 2 cut(s) 189, 663
BseSI GKGCMC 1 cut(s) 518
BseX3I CGGCCG 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 3 cut(s) 7, 191, 665
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 59, 108, 750, 771
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 102, 518
BsiSI CCGG 4 cut(s) 105, 140, 203, 241
BslI CCNNNNNNNGG 1 cut(s) 746
BsmAI GTCTC 1 cut(s) 599
BsnI GGCC 4 cut(s) 59, 108, 750, 771
Bsp1286I GDGCHC 3 cut(s) 102, 518, 594
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 3 cut(s) 28, 144, 616
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 6 cut(s) 5, 7, 109, 302, 391, 678
BspANI GGCC 4 cut(s) 59, 108, 750, 771
BspCNI CTCAG 3 cut(s) 286, 622, 725
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 3 cut(s) 7, 191, 665
BspLI GGNNCC 2 cut(s) 67, 245
BspMAI CTGCAG 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 2 cut(s) 159, 449
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 5 cut(s) 5, 69, 424, 457, 751
BssHII GCGCGC 2 cut(s) 189, 663
BssMI GATC 3 cut(s) 28, 144, 616
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 425, 752
Bst4CI ACNGT 3 cut(s) 210, 520, 534
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 5 cut(s) 102, 106, 191, 269, 665
BstDEI CTNAG 4 cut(s) 294, 408, 609, 712
BstDSI CCRYGG 2 cut(s) 5, 69
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 3 cut(s) 7, 191, 665
BstHHI GCGC 6 cut(s) 36, 191, 193, 456, 665, 667
BstKTI GATC 3 cut(s) 31, 147, 619
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 3 cut(s) 28, 144, 616
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
BstNI CCWGG 2 cut(s) 425, 752
BstPI GGTNACC 1 cut(s) 787
BstSCI CCNGG 2 cut(s) 423, 750
BstSFI CTRYAG 1 cut(s) 248
BstSLI GKGCMC 1 cut(s) 518
BstUI CGCG 3 cut(s) 7, 191, 665
BstV2I GAAGAC 2 cut(s) 459, 571
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 4 cut(s) 59, 108, 750, 771
BtgI CCRYGG 2 cut(s) 5, 69
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 5 cut(s) 152, 291, 456, 492, 530
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 102, 106, 191, 269, 665
CfoI GCGC 6 cut(s) 36, 191, 193, 456, 665, 667
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 421
Cfr42I CCGCGG 1 cut(s) 8
CseI GACGC 1 cut(s) 121
CviAII CATG 4 cut(s) 70, 509, 524, 727
DdeI CTNAG 4 cut(s) 294, 408, 609, 712
DpnI GATC 3 cut(s) 30, 146, 618
DpnII GATC 3 cut(s) 28, 144, 616
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 106, 769
EagI CGGCCG 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 102, 594
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 787
EcoICRI GAGCTC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 787
EcoRII CCWGG 2 cut(s) 423, 750
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 102, 594
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 73, 512, 527, 730
FatI CATG 4 cut(s) 69, 508, 523, 726
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 4 cut(s) 5, 109, 392, 678
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 2 cut(s) 102, 594
Fsp4HI GCNGC 4 cut(s) 5, 109, 392, 678
GlaI GCGC 6 cut(s) 35, 190, 192, 455, 664, 666
GluI GCNGC 4 cut(s) 5, 109, 392, 678
HaeIII GGCC 4 cut(s) 59, 108, 750, 771
HapII CCGG 4 cut(s) 105, 140, 203, 241
HgaI GACGC 1 cut(s) 121
HhaI GCGC 6 cut(s) 36, 191, 193, 456, 665, 667
Hin1II CATG 4 cut(s) 73, 512, 527, 730
Hin6I GCGC 6 cut(s) 34, 189, 191, 454, 663, 665
HinP1I GCGC 6 cut(s) 34, 189, 191, 454, 663, 665
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 4 cut(s) 43, 398, 607, 716
HpaII CCGG 4 cut(s) 105, 140, 203, 241
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 174, 516, 723
Hpy188I TCNGA 4 cut(s) 65, 612, 691, 715
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 3 cut(s) 174, 516, 723
Hpy99I CGWCG 2 cut(s) 65, 152
HpyAV CCTTC 2 cut(s) 49, 353
HpyCH4III ACNGT 3 cut(s) 210, 520, 534
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 3 cut(s) 250, 262, 516
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
HpyF3I CTNAG 4 cut(s) 294, 408, 609, 712
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 4 cut(s) 73, 512, 527, 730
HspAI GCGC 6 cut(s) 34, 189, 191, 454, 663, 665
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 3 cut(s) 28, 144, 616
LmnI GCTCC 2 cut(s) 65, 283
LweI GCATC 2 cut(s) 169, 189
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 3 cut(s) 133, 304, 787
MalI GATC 3 cut(s) 30, 146, 618
MboI GATC 3 cut(s) 28, 144, 616
MboII GAAGA 4 cut(s) 64, 338, 459, 571
MhlI GDGCHC 3 cut(s) 102, 518, 594
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 4 cut(s) 565, 733, 741, 793
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 7 cut(s) 29, 137, 313, 325, 349, 391, 467
Mox20I TGGCCA 1 cut(s) 771
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 4 cut(s) 105, 140, 203, 241
MspR9I CCNGG 2 cut(s) 425, 752
MvaI CCWGG 2 cut(s) 425, 752
MvnI CGCG 3 cut(s) 7, 191, 665
MwoI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 69
NdeII GATC 3 cut(s) 28, 144, 616
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 4 cut(s) 73, 512, 527, 730
NlaIV GGNNCC 2 cut(s) 67, 245
NmeAIII GCCGAG 1 cut(s) 438
NmuCI GTSAC 3 cut(s) 133, 304, 787
PauI GCGCGC 2 cut(s) 189, 663
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 43, 398, 716
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 4 cut(s) 6, 110, 393, 679
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 423, 750
PspEI GGTNACC 1 cut(s) 787
PspGI CCWGG 2 cut(s) 423, 750
PspN4I GGNNCC 2 cut(s) 67, 245
PspPI GGNCC 1 cut(s) 421
PstI CTGCAG 1 cut(s) 252
PteI GCGCGC 2 cut(s) 189, 663
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 8
SatI GCNGC 4 cut(s) 5, 109, 392, 678
Sau3AI GATC 3 cut(s) 28, 144, 616
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 2 cut(s) 425, 752
SduI GDGCHC 3 cut(s) 102, 518, 594
SfaNI GCATC 2 cut(s) 169, 189
SfcI CTRYAG 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 3 cut(s) 20, 75, 353
SmoI CTYRAG 3 cut(s) 20, 75, 353
Sse9I AATT 4 cut(s) 565, 733, 741, 793
SsiI CCGC 6 cut(s) 5, 7, 109, 302, 391, 678
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 423, 750
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 210, 520, 534
TaiI ACGT 1 cut(s) 686
TaqI TCGA 3 cut(s) 15, 218, 225
TasI AATT 4 cut(s) 565, 733, 741, 793
TauI GCSGC 4 cut(s) 7, 111, 394, 680
TfiI GAWTC 3 cut(s) 43, 398, 716
TscAI CASTG 5 cut(s) 159, 298, 456, 499, 537
TseFI GTSAC 3 cut(s) 133, 304, 787
Tsp45I GTSAC 3 cut(s) 133, 304, 787
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 2 cut(s) 104, 545
TspRI CASTG 5 cut(s) 159, 298, 456, 499, 537
Van91I CCANNNNNTGG 1 cut(s) 746
VneI GTGCAC 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.