Rh7CG500500

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000347
Physical Location & Seq
Forward (+)
67605327 .. 67607052
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG500500.1

Sequence Viewer

Length: 438 bp
ATGGTTTTGGGCGGCGGAGCAGTGGCGTTGGTGATGGCGGTGGGGATTGGGGTATGGAGCTGTTTGGCCTTGAATTGGGATTTGATGGAGGAGGGGAAGGTTGCTGAGGAGATCGACGGAGGCGTTGTGCTGATTGTTGAGGCCGTGGCGCCACTCATCGACCTGGCCGACTTCGCCGATGTCTCACCGGATGAGGTATTCTTGTTGATTGCCAGCAACTCCATGATCTCCAAGGGGGACTTCGTTATGCAGTGGATTCCGGAGTTGACCTTTGCTCGCGTCATTTGCAACGTTCACGGATCGTTCGTTTTCAACCTAGGCCGGTTGTACTCCAATCTGAATCGCGCCGACGACGACGGTGAGGATTTGATCAGCTTCGTGACTGTGAATTCCGGTCAGTACAACTTTAGTTTTGCGTTTCTTGAGGTTTTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

145

Amino Acids

15.66

Weight (kDa)

4.05

Isoelectric Point (pI)

18.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AccII CGCG 2 cut(s) 279, 345
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 3 cut(s) 12, 15, 38
AclI AACGTT 1 cut(s) 291
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 2 cut(s) 329, 401
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 73, 313
AjnI CCWGG 1 cut(s) 162
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 60, 375
AluI AGCT 2 cut(s) 60, 375
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 307
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 4 cut(s) 66, 141, 165, 319
ApoI RAATTY 1 cut(s) 388
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 2 cut(s) 151, 347
AsuHPI GGTGA 3 cut(s) 43, 177, 371
AvrII CCTAGG 1 cut(s) 316
BanI GGYRCC 1 cut(s) 148
BbvCI CCTCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 28, 79
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 1 cut(s) 13
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 144, 231, 316
BsaWI WCCGGW 3 cut(s) 187, 259, 392
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 144, 231, 316
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 96
BseRI GAGGAG 2 cut(s) 104, 122
Bsh1236I CGCG 2 cut(s) 279, 345
BshFI GGCC 4 cut(s) 68, 143, 167, 321
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 4 cut(s) 188, 260, 322, 393
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 4 cut(s) 68, 143, 167, 321
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 4 cut(s) 111, 225, 299, 369
BspACI CCGC 3 cut(s) 12, 15, 38
BspANI GGCC 4 cut(s) 68, 143, 167, 321
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 2 cut(s) 279, 345
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 321
BssECI CCNNGG 3 cut(s) 144, 231, 316
BssMI GATC 4 cut(s) 111, 225, 299, 369
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 231, 316
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 359, 385
BstACI GRCGYC 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 214, 277
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 2 cut(s) 279, 345
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 151, 347
BstKTI GATC 4 cut(s) 114, 228, 302, 372
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 4 cut(s) 111, 225, 299, 369
BstMWI GCNNNNNNNGC 2 cut(s) 173, 285
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 2 cut(s) 279, 345
BsuRI GGCC 4 cut(s) 68, 143, 167, 321
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 2 cut(s) 27, 257
BtsIMutI CAGTG 2 cut(s) 27, 257
Cac8I GCNNGC 2 cut(s) 214, 277
CfoI GCGC 2 cut(s) 151, 347
Cfr10I RCCGGY 1 cut(s) 321
CseI GACGC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 328, 400
CviAII CATG 1 cut(s) 223
CviJI RGCY 6 cut(s) 60, 68, 143, 167, 321, 375
CviKI_1 RGCY 6 cut(s) 60, 68, 143, 167, 321, 375
CviQI GTAC 2 cut(s) 328, 400
DdeI CTNAG 1 cut(s) 105
DinI GGCGCC 1 cut(s) 150
DpnI GATC 4 cut(s) 113, 227, 301, 371
DpnII GATC 4 cut(s) 111, 225, 299, 369
EaeI YGGCCR 1 cut(s) 165
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 231, 316
EcoRI GAATTC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 231, 316
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 231, 316
FaeI CATG 1 cut(s) 226
FaiI YATR 3 cut(s) 55, 224, 248
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 222
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 317
GlaI GCGC 2 cut(s) 150, 346
GluI GCNGC 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 4 cut(s) 68, 143, 167, 321
HapII CCGG 4 cut(s) 188, 260, 322, 393
HgaI GACGC 1 cut(s) 268
HhaI GCGC 2 cut(s) 151, 347
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 2 cut(s) 149, 345
HinP1I GCGC 2 cut(s) 149, 345
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 2 cut(s) 256, 340
HpaII CCGG 4 cut(s) 188, 260, 322, 393
HphI GGTGA 3 cut(s) 43, 177, 371
Hpy166II GTNNAC 2 cut(s) 267, 295
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 3 cut(s) 260, 379, 422
Hpy8I GTNNAC 2 cut(s) 267, 295
Hpy99I CGWCG 4 cut(s) 119, 353, 356, 359
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 359, 385
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 250, 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 285
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 2 cut(s) 149, 345
KasI GGCGCC 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 4 cut(s) 111, 225, 299, 369
LmnI GCTCC 2 cut(s) 17, 57
LpnPI CCDG 7 cut(s) 149, 176, 201, 226, 273, 335, 406
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 379
MalI GATC 4 cut(s) 113, 227, 301, 371
MboI GATC 4 cut(s) 111, 225, 299, 369
MluCI AATT 2 cut(s) 73, 388
Mly113I GGCGCC 1 cut(s) 149
MnlI CCTC 8 cut(s) 82, 85, 100, 113, 133, 187, 355, 418
MroI TCCGGA 1 cut(s) 259
MspI CCGG 4 cut(s) 188, 260, 322, 393
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 2 cut(s) 279, 345
MwoI GCNNNNNNNGC 2 cut(s) 173, 285
NarI GGCGCC 1 cut(s) 149
NdeII GATC 4 cut(s) 111, 225, 299, 369
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 165, 303
PfeI GAWTC 2 cut(s) 256, 340
PkrI GCNGC 1 cut(s) 14
PluTI GGCGCC 1 cut(s) 152
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 150
RsaI GTAC 2 cut(s) 329, 401
RsaNI GTAC 2 cut(s) 328, 400
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 4 cut(s) 111, 225, 299, 369
ScrFI CCNGG 1 cut(s) 164
SetI ASST 9 cut(s) 62, 102, 165, 198, 272, 294, 318, 377, 429
SfoI GGCGCC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 2 cut(s) 73, 388
SsiI CCGC 3 cut(s) 12, 15, 38
SspDI GGCGCC 1 cut(s) 148
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 2 cut(s) 231, 316
TaaI ACNGT 2 cut(s) 359, 385
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 114, 159
TasI AATT 2 cut(s) 73, 388
TatI WGTACW 2 cut(s) 327, 399
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 256, 340
TscAI CASTG 2 cut(s) 27, 257
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspGWI ACGGA 2 cut(s) 132, 312
TspRI CASTG 2 cut(s) 27, 257
XapI RAATTY 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 316
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.