Rh1CG235100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Reverse (-)
49272514 .. 49276370
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG235100.1

Sequence Viewer

Length: 432 bp
ATGTTCAACGATTTCATCCCCAACAATGCCGACCTCCAATTATCTCCAACCATGGTCCTCCTGGTTTCCACAAACTCGCATTTTCGGCTTTCGGAAATGACCACCGTGCTGGCGGTGCCGCGCTCCTCCATGTCGAGATTCTGGTGCTCCAAGAGCTGCCGCACGCTGTGTGTTTCTCTGCACAGGTTGAAATGCCTACCGGAACGCAGCGCTGGGGATTCGGTTACTCTTTATGGTGATGAACAAGCTGTTGATAGGATTTTCTGTGAAATTGGGGATGATGATGGCATCAAATACTCCTCTACACTGCCATTTGATCTCCAGCACAAGAGCGCGTTTCTCAATGCCGCTAGACTGTCAAAGATGGTTAAACTTGAGTGGGCCAACATGAAGTGGCATAACAGCGACTTCAATTTGAAATTACTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.25

Weight (kDa)

7.66

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccII CGCG 2 cut(s) 121, 335
AciI CCGC 4 cut(s) 113, 119, 160, 348
AdeI CACNNNGTG 1 cut(s) 168
AfeI AGCGCT 1 cut(s) 211
AgsI TTSAA 4 cut(s) 7, 190, 412, 418
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 156, 248
AluI AGCT 2 cut(s) 156, 248
Alw21I GWGCWC 1 cut(s) 149
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 156, 207
AspLEI GCGC 3 cut(s) 123, 212, 335
AspS9I GGNCC 2 cut(s) 55, 381
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 143, 219
BccI CCATC 2 cut(s) 278, 358
BciT130I CCWGG 1 cut(s) 62
BfaI CTAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 5 cut(s) 119, 157, 160, 208, 348
BlsI GCNGC 5 cut(s) 120, 158, 161, 209, 349
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 381
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 199
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 15, 283
BseRI GAGGAG 2 cut(s) 115, 289
BseXI GCAGC 2 cut(s) 143, 219
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 2 cut(s) 121, 335
BshFI GGCC 1 cut(s) 383
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 200
BsnI GGCC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 4 cut(s) 113, 119, 160, 348
BspANI GGCC 1 cut(s) 383
BspFNI CGCG 2 cut(s) 121, 335
BspLI GGNNCC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 106, 357
BstC8I GCNNGC 2 cut(s) 111, 164
BstDEI CTNAG 1 cut(s) 425
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 15, 283
BstFNI CGCG 2 cut(s) 121, 335
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 123, 212, 335
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 3 cut(s) 85, 115, 153
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 2 cut(s) 121, 335
BstV1I GCAGC 2 cut(s) 143, 219
BstXI CCANNNNNNTGG 1 cut(s) 109
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 15, 283
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 111, 164
CfoI GCGC 3 cut(s) 123, 212, 335
Cfr13I GGNCC 2 cut(s) 55, 381
CviAII CATG 3 cut(s) 52, 130, 388
CviJI RGCY 4 cut(s) 88, 156, 248, 383
CviKI_1 RGCY 4 cut(s) 88, 156, 248, 383
DdeI CTNAG 1 cut(s) 425
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 55
Eco47III AGCGCT 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 3 cut(s) 55, 133, 391
FaiI YATR 5 cut(s) 53, 131, 234, 389, 399
FatI CATG 3 cut(s) 51, 129, 387
Fnu4HI GCNGC 5 cut(s) 119, 157, 160, 208, 348
FokI GGATG 2 cut(s) 2, 290
Fsp4HI GCNGC 5 cut(s) 119, 157, 160, 208, 348
FspBI CTAG 1 cut(s) 351
GlaI GCGC 3 cut(s) 122, 211, 334
GluI GCNGC 5 cut(s) 119, 157, 160, 208, 348
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 200
HhaI GCGC 3 cut(s) 123, 212, 335
Hin1II CATG 3 cut(s) 55, 133, 391
Hin6I GCGC 3 cut(s) 121, 210, 333
HinP1I GCGC 3 cut(s) 121, 210, 333
HinfI GANTC 2 cut(s) 138, 218
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 135
HpyCH4III ACNGT 2 cut(s) 106, 357
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 115, 153
HpyF3I CTNAG 1 cut(s) 425
Hsp92II CATG 3 cut(s) 55, 133, 391
HspAI GCGC 3 cut(s) 121, 210, 333
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 128, 152
LpnPI CCDG 8 cut(s) 47, 74, 95, 127, 169, 198, 213, 335
Lsp1109I GCAGC 2 cut(s) 143, 219
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 4 cut(s) 38, 270, 412, 419
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 44, 68, 136, 310
MseI TTAA 2 cut(s) 369, 430
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 2 cut(s) 121, 335
MwoI GCNNNNNNNGC 3 cut(s) 85, 115, 153
NcoI CCATGG 1 cut(s) 51
NdeII GATC 1 cut(s) 316
NlaIII CATG 3 cut(s) 55, 133, 391
NlaIV GGNNCC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 138, 218
PkrI GCNGC 5 cut(s) 120, 158, 161, 209, 349
Psp6I CCWGG 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 55, 381
SaqAI TTAA 2 cut(s) 369, 430
SatI GCNGC 5 cut(s) 119, 157, 160, 208, 348
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 2 cut(s) 55, 381
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 149
SetI ASST 4 cut(s) 36, 158, 188, 250
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 4 cut(s) 38, 270, 412, 419
SsiI CCGC 4 cut(s) 113, 119, 160, 348
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 106, 357
TaqI TCGA 1 cut(s) 134
TasI AATT 4 cut(s) 38, 270, 412, 419
TauI GCSGC 3 cut(s) 121, 162, 350
TfiI GAWTC 2 cut(s) 138, 218
Tru1I TTAA 2 cut(s) 369, 430
Tru9I TTAA 2 cut(s) 369, 430
TscAI CASTG 1 cut(s) 312
TseI GCWGC 2 cut(s) 156, 207
TspDTI ATGAA 3 cut(s) 4, 255, 404
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.