Rh1AG231800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000347
Physical Location & Seq
Reverse (-)
44112889 .. 44114349
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG231800.1

Sequence Viewer

Length: 249 bp
ATGTTTGATCTCCGACTGAACCAAGGCTCTGTTCTTCTCCTGAAGGCTGTGGTGCCACTCGTTGACCTGGCCGACTTCGCCGATGTCTCACCAGTTGAGATCAGTAGACCTCACAAGCTGCTCAAGTATGTGGTCCAATATTTTATTTTTAATACCAAAACTCGAGCAAAAAAAAAGCCTGCTGAGATAGGCTTCATGGTTGGCCTATGTGACCTTAAAGTTGAAAAAGTAGTAAAGCAACATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.31

Weight (kDa)

9.37

Isoelectric Point (pI)

27.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 69, 202
ApeKI GCWGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 81
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 91
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 2 cut(s) 71, 204
BshNI GGYRCC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 2 cut(s) 71, 204
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 2 cut(s) 7, 99
BspANI GGCC 2 cut(s) 71, 204
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 7, 99
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 2 cut(s) 10, 102
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 2 cut(s) 7, 99
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 71, 204
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 133
CviAII CATG 2 cut(s) 196, 242
CviJI RGCY 7 cut(s) 27, 47, 71, 118, 178, 192, 204
CviKI_1 RGCY 7 cut(s) 27, 47, 71, 118, 178, 192, 204
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 9, 101
DpnII GATC 2 cut(s) 7, 99
EaeI YGGCCR 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 2 cut(s) 199, 245
FaiI YATR 4 cut(s) 129, 197, 208, 243
FatI CATG 2 cut(s) 195, 241
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 2 cut(s) 71, 204
Hin1II CATG 2 cut(s) 199, 245
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 64, 107
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 64, 107
HpyAV CCTTC 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 199, 245
Kzo9I GATC 2 cut(s) 7, 99
LpnPI CCDG 5 cut(s) 53, 53, 80, 105, 192
Lsp1109I GCAGC 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 209
MalI GATC 2 cut(s) 9, 101
MboI GATC 2 cut(s) 7, 99
MboII GAAGA 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 1 cut(s) 120
MseI TTAA 3 cut(s) 150, 216, 247
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 7, 99
NlaIII CATG 2 cut(s) 199, 245
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 162
PkrI GCNGC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 133
PspXI VCTCGAGB 1 cut(s) 162
SaqAI TTAA 3 cut(s) 150, 216, 247
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 7, 99
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 68
SetI ASST 4 cut(s) 69, 112, 120, 216
Sfr274I CTCGAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 122, 162
SmoI CTYRAG 2 cut(s) 122, 162
SspI AATATT 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 22
TaqI TCGA 1 cut(s) 163
Tru1I TTAA 3 cut(s) 150, 216, 247
Tru9I TTAA 3 cut(s) 150, 216, 247
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 133
XhoI CTCGAG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.