RchiOBHm_Chr2g0131681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000347
Physical Location & Seq
Forward (+)
48064586 .. 48067171
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50301

Sequence Viewer

Length: 159 bp
ATGCTCTTAATTTGCGAGACCCAGAGTGATCATGGATTTCCTTTTGTGCCAAAGTTTGATATCCAGCACGAGTGCGCTTCTCAATGCCGCTATGTTGTTAGAGATGATATCGATATAGTTCTCAGATTCGTTCACCATGCTCAGTTTCCCAATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

6.1

Weight (kDa)

5.62

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 125
BauI CACGAG 1 cut(s) 68
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 11
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 111
BseMII CTCAG 2 cut(s) 136, 155
BshVI ATCGAT 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 135, 154
BspDI ATCGAT 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 11
BssMI GATC 1 cut(s) 28
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 122, 141
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 111
CfoI GCGC 1 cut(s) 77
ClaI ATCGAT 1 cut(s) 111
CviAII CATG 2 cut(s) 32, 137
DdeI CTNAG 2 cut(s) 122, 141
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 11
Eco32I GATATC 2 cut(s) 61, 109
EcoRV GATATC 2 cut(s) 61, 109
FaeI CATG 2 cut(s) 35, 140
FaiI YATR 4 cut(s) 33, 93, 116, 138
FatI CATG 2 cut(s) 31, 136
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
FspEI CC 8 cut(s) 18, 34, 35, 54, 63, 77, 101, 149
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 35, 140
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 126
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 122, 141
Hsp92II CATG 2 cut(s) 35, 140
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 35, 77
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MluCI AATT 2 cut(s) 9, 151
MseI TTAA 1 cut(s) 8
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 35, 140
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 28
SgeI CNNG 7 cut(s) 28, 34, 44, 76, 80, 82, 149
Sse9I AATT 2 cut(s) 9, 151
SsiI CCGC 1 cut(s) 88
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 9, 151
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.