FvH4_7g13780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000347
Physical Location & Seq
Forward (+)
12309269 .. 12311166
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13780.t1

Sequence Viewer

Length: 816 bp
ATGTGGCGGTGGTTTGACCTCAGGCTTGACCGGCCCAAATCGAAGCTTCTGAAGATGGCCGTCGGAGCCATGGATCAAGTAGCCTTCACCGACAGAGAGCTCGCCGGCCGCCCCCAAAAGGCTAGCCTCTGCCTCACTCCGGAGAACGCCGTACTGGTTTCCAAAACCGAGGCAGCTGATGCCTTCTTCGTACTTCGAATCCCGGAGCGCTTGATGTCGAGCTTCGAGTGCTACGAGAGCTGTAATCTCCAAATCTATCTGCACACCTTGCACCGCCATTTGAAGCAATTGGAGGACAAGACTGAGTTTGCAGAAATCGCTCTTTATTGCGAGGATCCTACTCAATCGGCTAATGCTGTGATTAACTTTGAGCTTGATGAGAATGGTGAGCACTCCAAAATTCCACTGCTTTCATGGCATCGGGCTGAGATTGACCTGTGGTACATAGCATATGACTATCCAGTGCGTCTTGGATTGTCTTCACAGAGCTTTTGTTACCTCATCACTATTATGGATTCCTATGGGTGTACAGTTCATGCCACACTATTTGAAAATAAAGTTCATTTCCGTGTAGTGAATTACGAGTTTGACATCCCAACAAAGCCTGAGATCTGCGAGACTGAGAGTGATCGTGGATTTCCGTGTGCTTTGAAGTTTGATATTCAACACAAGAGTGCTCTTCTGAATGCCGCTACTTTCTCCGGGGAGATGATATGGATAAGGTTCTTGGATTCGTTCACCTTGGTCGGTTTCCAAATTGATGGCCTGGGTGATATTTTCTTTGGTCGTTATAATCATGTGGGACCAATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.22

Weight (kDa)

5.28

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 4 cut(s) 7, 109, 274, 690
AclWI GGATC 3 cut(s) 81, 329, 342
AcoI YGGCCR 2 cut(s) 57, 106
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 4 cut(s) 153, 192, 443, 529
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 118, 139
AgsI TTSAA 4 cut(s) 283, 551, 652, 665
AjnI CCWGG 1 cut(s) 765
AleI CACNNNNGTG 1 cut(s) 672
AluBI AGCT 7 cut(s) 46, 100, 176, 222, 240, 373, 489
AluI AGCT 7 cut(s) 46, 100, 176, 222, 240, 373, 489
Alw21I GWGCWC 3 cut(s) 102, 393, 679
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 3 cut(s) 81, 329, 342
Aor13HI TCCGGA 1 cut(s) 139
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 4 cut(s) 32, 57, 106, 763
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 399
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 33, 803
AsuC2I CCSGG 2 cut(s) 203, 703
AsuHPI GGTGA 4 cut(s) 79, 398, 730, 782
AsuII TTCGAA 1 cut(s) 196
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 803
AxyI CCTNAGG 1 cut(s) 20
BamHI GGATCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 3 cut(s) 102, 393, 679
BbvI GCAGC 1 cut(s) 185
BccI CCATC 2 cut(s) 49, 755
BceAI ACGGC 2 cut(s) 44, 134
BciT130I CCWGG 1 cut(s) 767
BcnI CCSGG 2 cut(s) 203, 703
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 211
BglII AGATCT 1 cut(s) 609
BisI GCNGC 3 cut(s) 109, 174, 690
BlsI GCNGC 3 cut(s) 110, 175, 691
Bme1390I CCNGG 3 cut(s) 203, 703, 767
Bme18I GGWCC 1 cut(s) 803
BmgT120I GGNCC 2 cut(s) 33, 803
BmiI GGNNCC 3 cut(s) 67, 336, 804
BmrFI CCNGG 3 cut(s) 203, 703, 767
BmsI GCATC 2 cut(s) 169, 427
BmtI GCTAGC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 196
BpuMI CCSGG 2 cut(s) 203, 703
BsaJI CCNNGG 5 cut(s) 69, 168, 702, 741, 766
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 139
Bse118I RCCGGY 2 cut(s) 30, 104
Bse1I ACTGG 2 cut(s) 159, 461
Bse21I CCTNAGG 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 5 cut(s) 69, 168, 702, 741, 766
BseGI GGATG 1 cut(s) 591
BseLI CCNNNNNNNGG 2 cut(s) 118, 139
BseMII CTCAG 5 cut(s) 34, 294, 417, 597, 612
BseNI ACTGG 2 cut(s) 159, 461
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 34, 59, 108, 765
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 3 cut(s) 102, 393, 679
BsiSI CCGG 5 cut(s) 31, 105, 140, 203, 702
BslI CCNNNNNNNGG 2 cut(s) 118, 139
BsmAI GTCTC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 4 cut(s) 34, 59, 108, 765
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 3 cut(s) 102, 393, 679
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 527
Bsp143I GATC 4 cut(s) 73, 334, 609, 628
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 4 cut(s) 7, 109, 274, 690
BspANI GGCC 4 cut(s) 34, 59, 108, 765
BspCNI CTCAG 5 cut(s) 33, 295, 418, 598, 613
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 3 cut(s) 67, 336, 804
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 3 cut(s) 81, 329, 342
BspQI GCTCTTC 1 cut(s) 684
BspT104I TTCGAA 1 cut(s) 196
BsrFI RCCGGY 2 cut(s) 30, 104
BsrGI TGTACA 1 cut(s) 527
BsrI ACTGG 2 cut(s) 159, 461
BssAI RCCGGY 2 cut(s) 30, 104
BssECI CCNNGG 5 cut(s) 69, 168, 702, 741, 766
BssMI GATC 4 cut(s) 73, 334, 609, 628
BssT1I CCWWGG 2 cut(s) 69, 741
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 1 cut(s) 684
BstAPI GCANNNNNTGC 2 cut(s) 179, 268
BstAUI TGTACA 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 102, 106, 124
BstDEI CTNAG 5 cut(s) 20, 303, 426, 606, 621
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 591
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 4 cut(s) 76, 337, 612, 631
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 4 cut(s) 73, 334, 609, 628
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 8 cut(s) 31, 65, 179, 228, 237, 268, 317, 415
BstNI CCWGG 1 cut(s) 767
BstSCI CCNGG 3 cut(s) 201, 701, 765
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 334, 609
BstXI CCANNNNNNTGG 1 cut(s) 761
BstYI RGATCY 2 cut(s) 334, 609
BstZI CGGCCG 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 4 cut(s) 34, 59, 108, 765
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 591
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 2 cut(s) 404, 468
Cac8I GCNNGC 3 cut(s) 102, 106, 124
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 2 cut(s) 30, 104
Cfr13I GGNCC 2 cut(s) 33, 803
CseI GACGC 1 cut(s) 455
Csp6I GTAC 4 cut(s) 152, 191, 442, 528
CspCI CAANNNNNGTGG 2 cut(s) 529, 564
CviAII CATG 4 cut(s) 70, 414, 536, 797
CviQI GTAC 4 cut(s) 152, 191, 442, 528
DdeI CTNAG 5 cut(s) 20, 303, 426, 606, 621
DpnI GATC 4 cut(s) 75, 336, 611, 630
DpnII GATC 4 cut(s) 73, 334, 609, 628
EaeI YGGCCR 2 cut(s) 57, 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 69, 741
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 803
Eco47III AGCGCT 1 cut(s) 209
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 69, 741
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 69, 741
FaeI CATG 4 cut(s) 73, 417, 539, 800
FatI CATG 4 cut(s) 69, 413, 535, 796
FauNDI CATATG 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 109, 174, 690
FokI GGATG 1 cut(s) 578
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 109, 174, 690
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 209
GluI GCNGC 3 cut(s) 109, 174, 690
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 4 cut(s) 34, 59, 108, 765
HapII CCGG 5 cut(s) 31, 105, 140, 203, 702
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 210
Hin1II CATG 4 cut(s) 73, 417, 539, 800
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 3 cut(s) 198, 515, 731
HpaII CCGG 5 cut(s) 31, 105, 140, 203, 702
HphI GGTGA 4 cut(s) 79, 398, 730, 782
Hpy166II GTNNAC 2 cut(s) 528, 738
Hpy188I TCNGA 3 cut(s) 51, 65, 684
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 528, 738
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 94, 193
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4V TGCA 3 cut(s) 262, 271, 311
HpyF10VI GCNNNNNNNGC 8 cut(s) 31, 65, 179, 228, 237, 268, 317, 415
HpyF3I CTNAG 5 cut(s) 20, 303, 426, 606, 621
Hsp92II CATG 4 cut(s) 73, 417, 539, 800
HspAI GCGC 1 cut(s) 208
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 4 cut(s) 73, 334, 609, 628
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 2 cut(s) 65, 205
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 2 cut(s) 169, 427
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 494
MalI GATC 4 cut(s) 75, 336, 611, 630
MboI GATC 4 cut(s) 73, 334, 609, 628
MboII GAAGA 4 cut(s) 64, 178, 471, 671
MfeI CAATTG 1 cut(s) 287
MflI RGATCY 2 cut(s) 334, 609
MhlI GDGCHC 3 cut(s) 102, 393, 679
MluCI AATT 4 cut(s) 287, 399, 577, 756
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 7 cut(s) 29, 137, 143, 163, 286, 325, 509
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 3 cut(s) 509, 567, 672
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 5 cut(s) 31, 105, 140, 203, 702
MspR9I CCNGG 3 cut(s) 203, 703, 767
MunI CAATTG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 691
MvaI CCWGG 1 cut(s) 767
MwoI GCNNNNNNNGC 8 cut(s) 31, 65, 179, 228, 237, 268, 317, 415
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 2 cut(s) 203, 703
NcoI CCATGG 1 cut(s) 69
NdeI CATATG 1 cut(s) 451
NdeII GATC 4 cut(s) 73, 334, 609, 628
NgoMIV GCCGGC 1 cut(s) 104
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 4 cut(s) 73, 417, 539, 800
NlaIV GGNNCC 3 cut(s) 67, 336, 804
NspV TTCGAA 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 672
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 691
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 3 cut(s) 198, 515, 731
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 3 cut(s) 110, 175, 691
PsiI TTATAA 1 cut(s) 792
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 765
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 3 cut(s) 67, 336, 804
PspPI GGNCC 2 cut(s) 33, 803
PsuI RGATCY 2 cut(s) 334, 609
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 4 cut(s) 153, 192, 443, 529
RsaNI GTAC 4 cut(s) 152, 191, 442, 528
RseI CAYNNNNRTG 3 cut(s) 509, 567, 672
SacI GAGCTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 109, 174, 690
Sau3AI GATC 4 cut(s) 73, 334, 609, 628
Sau96I GGNCC 2 cut(s) 33, 803
ScrFI CCNGG 3 cut(s) 203, 703, 767
SduI GDGCHC 3 cut(s) 102, 393, 679
SfaNI GCATC 2 cut(s) 169, 427
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 1 cut(s) 803
SmiMI CAYNNNNRTG 3 cut(s) 509, 567, 672
Sse9I AATT 4 cut(s) 287, 399, 577, 756
SsiI CCGC 4 cut(s) 7, 109, 274, 690
SspMI CTAG 1 cut(s) 123
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 201, 701, 765
StyI CCWWGG 2 cut(s) 69, 741
TaaI ACNGT 1 cut(s) 532
TaqI TCGA 4 cut(s) 41, 196, 218, 225
TasI AATT 4 cut(s) 287, 399, 577, 756
TatI WGTACW 1 cut(s) 527
TauI GCSGC 2 cut(s) 111, 692
TfiI GAWTC 3 cut(s) 198, 515, 731
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 411, 468
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 402, 524, 551
TspGWI ACGGA 2 cut(s) 557, 630
TspRI CASTG 2 cut(s) 411, 468
VpaK11BI GGWCC 1 cut(s) 803
XapI RAATTY 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 1 cut(s) 411
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.