Rh7BG455700

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000347
Physical Location & Seq
Forward (+)
53765465 .. 53765806
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG455700.1

Sequence Viewer

Length: 342 bp
ATGTTTGAGCTCCGACTCAACCAAGGCGCTGCTCTTCTCTTGAAGGCCGTGGCACCACTCATTGACCTGGCCGACTTCGCCGATGTCTCACCGGATAAGGTATTCTTGCTAATTGCTGGCAACTCCATGATCTCCGAAGGAGACTTCGTTATGCTGTGGATTCCGGAGTTGACCTTCGCTCGCGTCATTTGCAACGTTCACAGATCGTTCGTTCTCAACCTAGGTCGCTTGTACTCCAATCTGAATAGCGCCGGCGACGACGGCGAGGATTTGATCAACTTCGTGACTGTGAATTCCGGTCAGTACAACTTTAGTTTTGCGTTTCTTGAGGTTTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

113

Amino Acids

12.48

Weight (kDa)

4.29

Isoelectric Point (pI)

16.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccII CGCG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 163
AclI AACGTT 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 2 cut(s) 233, 305
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 91, 135
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 2 cut(s) 45, 69
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 292
AspA2I CCTAGG 1 cut(s) 220
AspLEI GCGC 2 cut(s) 29, 251
AsuHPI GGTGA 1 cut(s) 81
AvrII CCTAGG 1 cut(s) 220
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 16
BceAI ACGGC 2 cut(s) 32, 277
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 91, 135
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 2 cut(s) 30, 252
BisI GCNGC 1 cut(s) 30
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 22, 48, 220
BsaWI WCCGGW 3 cut(s) 91, 163, 296
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse118I RCCGGY 1 cut(s) 251
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 22, 48, 220
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 47, 71
BshNI GGYRCC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 4 cut(s) 92, 164, 252, 297
BsmAI GTCTC 2 cut(s) 91, 135
BsnI GGCC 2 cut(s) 47, 71
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 129, 203, 273
BspANI GGCC 2 cut(s) 47, 71
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 22, 48, 220
BssMI GATC 3 cut(s) 129, 203, 273
BssT1I CCWWGG 2 cut(s) 22, 220
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 118, 181, 253
BstDSI CCRYGG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 2 cut(s) 30, 252
BstHHI GCGC 2 cut(s) 29, 251
BstKTI GATC 3 cut(s) 132, 206, 276
BstMAI GTCTC 2 cut(s) 91, 135
BstMBI GATC 3 cut(s) 129, 203, 273
BstMWI GCNNNNNNNGC 3 cut(s) 77, 189, 261
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 47, 71
BtgI CCRYGG 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 118, 181, 253
CfoI GCGC 2 cut(s) 29, 251
Cfr10I RCCGGY 1 cut(s) 251
CseI GACGC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 232, 304
CviAII CATG 1 cut(s) 127
CviJI RGCY 3 cut(s) 10, 47, 71
CviKI_1 RGCY 3 cut(s) 10, 47, 71
CviQI GTAC 2 cut(s) 232, 304
DpnI GATC 3 cut(s) 131, 205, 275
DpnII GATC 3 cut(s) 129, 203, 273
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 22, 220
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 22, 220
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 2 cut(s) 22, 220
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 128, 152
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 126
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 221
GlaI GCGC 2 cut(s) 28, 250
GluI GCNGC 1 cut(s) 30
HaeII RGCGCY 2 cut(s) 30, 252
HaeIII GGCC 2 cut(s) 47, 71
HapII CCGG 4 cut(s) 92, 164, 252, 297
HgaI GACGC 1 cut(s) 172
HhaI GCGC 2 cut(s) 29, 251
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 27, 249
HinP1I GCGC 2 cut(s) 27, 249
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 2 cut(s) 15, 160
HpaII CCGG 4 cut(s) 92, 164, 252, 297
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 171, 199
Hpy188I TCNGA 3 cut(s) 14, 136, 243
Hpy188III TCNNGA 4 cut(s) 40, 164, 283, 326
Hpy8I GTNNAC 2 cut(s) 171, 199
Hpy99I CGWCG 2 cut(s) 260, 263
HpyAV CCTTC 3 cut(s) 37, 131, 184
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 189, 261
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 27, 249
Kpn2I TCCGGA 1 cut(s) 163
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 3 cut(s) 129, 203, 273
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 7 cut(s) 53, 80, 102, 105, 177, 265, 310
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 283
MalI GATC 3 cut(s) 131, 205, 275
MboI GATC 3 cut(s) 129, 203, 273
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 111, 292
MlyI GAGTC 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 2 cut(s) 259, 322
MreI CGCCGGCG 1 cut(s) 251
MroI TCCGGA 1 cut(s) 163
MroNI GCCGGC 1 cut(s) 251
MspI CCGG 4 cut(s) 92, 164, 252, 297
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 77, 189, 261
NaeI GCCGGC 1 cut(s) 253
NdeII GATC 3 cut(s) 129, 203, 273
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 2 cut(s) 233, 305
RsaNI GTAC 2 cut(s) 232, 304
SacI GAGCTC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 3 cut(s) 129, 203, 273
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 12
SetI ASST 8 cut(s) 12, 69, 102, 176, 198, 222, 226, 333
SgrAI CRCCGGYG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 2 cut(s) 111, 292
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 2 cut(s) 22, 220
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 198
TasI AATT 2 cut(s) 111, 292
TatI WGTACW 2 cut(s) 231, 303
TfiI GAWTC 1 cut(s) 160
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 283
XapI RAATTY 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.