Rh1CG235000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Reverse (-)
49269924 .. 49270713
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG235000.1

Sequence Viewer

Length: 672 bp
ATGTCGTCACCGTCGTCGTCGTCTTCATCGGAGGAAGAAACAGACTCTGAATCTCCGATCACCATGTCGTCTTCTTCGTCGTCGTCGTCGACGTCCTCATTGGAGAAGAAGGAAACTCTGTTGTTTCATGTGGAGCTGAACGAAGTCCGTCTTCTGCAGAAGGCCTTGAGACCCCTGTATGAGACCGCCTACTTCCCGGAAGACATGTCCCTCACCGGAAAGATCCGCGACTCCGGCCACTTCTGCATATCTCCGGACGGGGTTCTTATCGCCTCCACAACCTCTTTCCCGCCTCATCTTGACGCCTATCTCGAACTGCCGCGTGCGACCTTCGCCGCCCTTCGCTGCCACAAGGACCATGTGCTCCGCCTCAACCTCTGCCTCTTGGAGGACCGAATCGCCGCCACCACCGTCAACGGTTGTGATGGTGTTTCTGCATGCTTCTCCGGAGAGAAGTACAGGCACAGCGCCCTGCTCTATTCTCTGAGGGACAAGGAAGGTTTTGCCGTGCACAGCTCTGAGATACCGCTCATTTGCTCCTATCCCGGTTTTCTGGCGACGTTAGATTGGTCAGATTACAGTTATCAACTCAGCATTGAGATGCCGACGGAGACTTTTAAGCAACTTATCAATTCTTTGAGCTTGTATGGGTTTGCAGGTACTTTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.61

Weight (kDa)

5.02

Isoelectric Point (pI)

64.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 89
AccII CGCG 2 cut(s) 228, 322
AccIII TCCGGA 2 cut(s) 253, 446
AciI CCGC 8 cut(s) 186, 226, 290, 320, 336, 367, 402, 527
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 92, 303
AfaI GTAC 2 cut(s) 458, 661
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 204
AluBI AGCT 3 cut(s) 136, 516, 642
AluI AGCT 3 cut(s) 136, 516, 642
Alw21I GWGCWC 2 cut(s) 366, 513
Alw26I GTCTC 3 cut(s) 163, 176, 605
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 47
Aor13HI TCCGGA 2 cut(s) 253, 446
AoxI GGCC 2 cut(s) 162, 235
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 355, 391
AsuC2I CCSGG 2 cut(s) 197, 546
AsuHPI GGTGA 2 cut(s) 52, 205
AvaII GGWCC 2 cut(s) 355, 391
BaeGI GKGCMC 1 cut(s) 513
BbsI GAAGAC 4 cut(s) 15, 63, 143, 207
Bbv12I GWGCWC 2 cut(s) 366, 513
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 491
BcnI CCSGG 2 cut(s) 197, 546
BcoDI GTCTC 3 cut(s) 163, 176, 605
BfmI CTRYAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 4 cut(s) 320, 336, 346, 402
BlsI GCNGC 4 cut(s) 321, 337, 347, 403
Bme1390I CCNGG 2 cut(s) 197, 546
Bme18I GGWCC 2 cut(s) 355, 391
BmgT120I GGNCC 2 cut(s) 355, 391
BmrFI CCNGG 2 cut(s) 197, 546
BmsI GCATC 1 cut(s) 591
BpiI GAAGAC 4 cut(s) 15, 63, 143, 207
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 2 cut(s) 197, 546
BsaHI GRCGYC 2 cut(s) 92, 303
BsaI GGTCTC 2 cut(s) 163, 176
BsaWI WCCGGW 3 cut(s) 215, 253, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 388
BseAI TCCGGA 2 cut(s) 253, 446
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 3 cut(s) 476, 510, 604
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 1 cut(s) 332
Bsh1236I CGCG 2 cut(s) 228, 322
BshFI GGCC 2 cut(s) 164, 237
BsiHKAI GWGCWC 2 cut(s) 366, 513
BsiSI CCGG 6 cut(s) 197, 216, 234, 254, 447, 546
BslFI GGGAC 2 cut(s) 193, 503
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 3 cut(s) 163, 176, 605
BsmFI GGGAC 2 cut(s) 193, 503
BsnI GGCC 2 cut(s) 164, 237
Bso31I GGTCTC 2 cut(s) 163, 176
Bsp1286I GDGCHC 2 cut(s) 366, 513
Bsp13I TCCGGA 2 cut(s) 253, 446
Bsp143I GATC 2 cut(s) 57, 222
BspACI CCGC 8 cut(s) 186, 226, 290, 320, 336, 367, 402, 527
BspANI GGCC 2 cut(s) 164, 237
BspCNI CTCAG 3 cut(s) 477, 511, 603
BspEI TCCGGA 2 cut(s) 253, 446
BspFNI CGCG 2 cut(s) 228, 322
BspMAI CTGCAG 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 1 cut(s) 217
BspTNI GGTCTC 2 cut(s) 163, 176
BsrBI CCGCTC 1 cut(s) 529
BssMI GATC 2 cut(s) 57, 222
BssNI GRCGYC 2 cut(s) 92, 303
Bst4CI ACNGT 4 cut(s) 12, 412, 419, 581
BstACI GRCGYC 2 cut(s) 92, 303
BstC8I GCNNGC 2 cut(s) 324, 439
BstDEI CTNAG 3 cut(s) 485, 519, 590
BstENI CCTNNNNNAGG 1 cut(s) 386
BstFNI CGCG 2 cut(s) 228, 322
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 2 cut(s) 60, 225
BstMAI GTCTC 3 cut(s) 163, 176, 605
BstMBI GATC 2 cut(s) 57, 222
BstMWI GCNNNNNNNGC 3 cut(s) 234, 243, 332
BstNSI RCATGY 2 cut(s) 208, 441
BstSCI CCNGG 2 cut(s) 195, 544
BstSFI CTRYAG 1 cut(s) 155
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 2 cut(s) 228, 322
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 4 cut(s) 15, 63, 143, 207
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BsuRI GGCC 2 cut(s) 164, 237
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 324, 439
CaiI CAGNNNCTG 1 cut(s) 47
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 355, 391
CseI GACGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 457, 660
CviAII CATG 5 cut(s) 64, 128, 205, 359, 438
CviJI RGCY 5 cut(s) 136, 164, 237, 516, 642
CviKI_1 RGCY 5 cut(s) 136, 164, 237, 516, 642
CviQI GTAC 2 cut(s) 457, 660
DdeI CTNAG 3 cut(s) 485, 519, 590
DpnI GATC 2 cut(s) 59, 224
DpnII GATC 2 cut(s) 57, 222
EaeI YGGCCR 1 cut(s) 235
EciI GGCGGA 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 164
Eco31I GGTCTC 2 cut(s) 163, 176
Eco47I GGWCC 2 cut(s) 355, 391
EcoNI CCTNNNNNAGG 1 cut(s) 386
FaeI CATG 5 cut(s) 67, 131, 208, 362, 441
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 2 cut(s) 193, 503
FatI CATG 5 cut(s) 63, 127, 204, 358, 437
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 320, 336, 346, 402
Fsp4HI GCNGC 4 cut(s) 320, 336, 346, 402
GlaI GCGC 1 cut(s) 469
GluI GCNGC 4 cut(s) 320, 336, 346, 402
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 164, 237
HapII CCGG 6 cut(s) 197, 216, 234, 254, 447, 546
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 2 cut(s) 92, 303
Hin1II CATG 5 cut(s) 67, 131, 208, 362, 441
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 2 cut(s) 90, 415
HindII GTYRAC 2 cut(s) 90, 415
HinfI GANTC 4 cut(s) 44, 50, 230, 396
HpaII CCGG 6 cut(s) 197, 216, 234, 254, 447, 546
HphI GGTGA 2 cut(s) 52, 205
Hpy166II GTNNAC 3 cut(s) 90, 415, 511
Hpy188I TCNGA 6 cut(s) 31, 49, 57, 486, 520, 574
Hpy188III TCNNGA 4 cut(s) 254, 299, 311, 447
Hpy8I GTNNAC 3 cut(s) 90, 415, 511
HpyAV CCTTC 5 cut(s) 103, 154, 340, 350, 491
HpyCH4III ACNGT 4 cut(s) 12, 412, 419, 581
HpyCH4IV ACGT 2 cut(s) 92, 560
HpyCH4V TGCA 5 cut(s) 157, 246, 437, 511, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 243, 332
HpyF3I CTNAG 3 cut(s) 485, 519, 590
HpySE526I ACGT 2 cut(s) 92, 560
Hsp92I GRCGYC 2 cut(s) 92, 303
Hsp92II CATG 5 cut(s) 67, 131, 208, 362, 441
HspAI GCGC 1 cut(s) 468
Kpn2I TCCGGA 2 cut(s) 253, 446
Kzo9I GATC 2 cut(s) 57, 222
LmnI GCTCC 3 cut(s) 133, 369, 542
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 591
MaeII ACGT 2 cut(s) 92, 560
MaeIII GTNAC 1 cut(s) 6
MalI GATC 2 cut(s) 59, 224
MbiI CCGCTC 1 cut(s) 529
MboI GATC 2 cut(s) 57, 222
MboII GAAGA 7 cut(s) 15, 47, 63, 66, 118, 143, 212
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 2 cut(s) 366, 513
MluCI AATT 1 cut(s) 631
MlyI GAGTC 2 cut(s) 38, 224
MroI TCCGGA 2 cut(s) 253, 446
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 6 cut(s) 197, 216, 234, 254, 447, 546
MspR9I CCNGG 2 cut(s) 197, 546
MvnI CGCG 2 cut(s) 228, 322
MwoI GCNNNNNNNGC 3 cut(s) 234, 243, 332
NciI CCSGG 2 cut(s) 197, 546
NdeII GATC 2 cut(s) 57, 222
NlaIII CATG 5 cut(s) 67, 131, 208, 362, 441
NmuCI GTSAC 1 cut(s) 6
NspI RCATGY 2 cut(s) 208, 441
PaeI GCATGC 1 cut(s) 441
PceI AGGCCT 1 cut(s) 164
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 6 cut(s) 11, 74, 83, 86, 89, 309
PfeI GAWTC 2 cut(s) 50, 396
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 4 cut(s) 321, 337, 347, 403
PleI GAGTC 2 cut(s) 38, 224
PpsI GAGTC 2 cut(s) 38, 224
PscI ACATGT 1 cut(s) 204
PspPI GGNCC 2 cut(s) 355, 391
PstI CTGCAG 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 222
RsaI GTAC 2 cut(s) 458, 661
RsaNI GTAC 2 cut(s) 457, 660
RseI CAYNNNNRTG 1 cut(s) 599
SalI GTCGAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 4 cut(s) 320, 336, 346, 402
Sau3AI GATC 2 cut(s) 57, 222
Sau96I GGNCC 2 cut(s) 355, 391
SchI GAGTC 2 cut(s) 38, 224
ScrFI CCNGG 2 cut(s) 197, 546
SduI GDGCHC 2 cut(s) 366, 513
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 1 cut(s) 155
SgrDI CGTCGACG 1 cut(s) 88
SinI GGWCC 2 cut(s) 355, 391
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SphI GCATGC 1 cut(s) 441
Sse9I AATT 1 cut(s) 631
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 8 cut(s) 186, 226, 290, 320, 336, 367, 402, 527
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 195, 544
TaaI ACNGT 4 cut(s) 12, 412, 419, 581
TaiI ACGT 2 cut(s) 95, 563
TaqI TCGA 2 cut(s) 89, 312
TaqII GACCGA 1 cut(s) 408
TasI AATT 1 cut(s) 631
TatI WGTACW 1 cut(s) 456
TauI GCSGC 3 cut(s) 322, 338, 404
TfiI GAWTC 2 cut(s) 50, 396
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 3 cut(s) 15, 116, 655
TspGWI ACGGA 2 cut(s) 137, 623
VneI GTGCAC 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 355, 391
XagI CCTNNNNNAGG 1 cut(s) 386
XceI RCATGY 2 cut(s) 208, 441
XmiI GTMKAC 1 cut(s) 89
ZraI GACGTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.