Rh1AG250700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
46549897 .. 46565627
15731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG250700.1

Sequence Viewer

Length: 333 bp
ATGGGTTTGAAGCTTCATAACATGTTGTGTATGCTGCTTACTGGTCTGCTGTGCATCATTTCAGTTCATGCCGATGTGACAGCGACTCGAATTATGTTTCGTGTAGTCAATAAAGTGGTTATTCTGGAGGAAGGGGCTGAGAGATACCGGATTCTGCGTGAGAGGGGTCAATATCCATTTTTGTTGGAATTCGGTATCCATCATAAGAGTGCATTCCTGAATGCGGCGAGTTTATCAGACAGAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTGGAGGTAACTGTTAATGGACTCGGTAGCATCATGTTTTGTTCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.51

Weight (kDa)

9.35

Isoelectric Point (pI)

22.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 223, 262
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 2 cut(s) 13, 259
AluI AGCT 2 cut(s) 13, 259
ApeKI GCWGC 2 cut(s) 34, 250
ApoI RAATTY 1 cut(s) 188
BbvI GCAGC 2 cut(s) 21, 237
BccI CCATC 1 cut(s) 207
BciVI GTATCC 1 cut(s) 206
BfaI CTAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 3 cut(s) 35, 225, 251
BlsI GCNGC 3 cut(s) 36, 226, 252
BmsI GCATC 2 cut(s) 63, 318
BpmI CTGGAG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 262
Bse1I ACTGG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 223, 262
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 21, 237
BsgI GTGCAG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 223, 262
BsmI GAATGC 2 cut(s) 212, 226
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 277, 292
BstDEI CTNAG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 21, 237
BsuI GTATCC 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 273
CviAII CATG 3 cut(s) 22, 68, 313
CviJI RGCY 5 cut(s) 13, 137, 250, 259, 328
CviKI_1 RGCY 5 cut(s) 13, 137, 250, 259, 328
DdeI CTNAG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 188
FaeI CATG 3 cut(s) 25, 71, 316
FaiI YATR 7 cut(s) 18, 23, 32, 69, 95, 204, 314
FatI CATG 3 cut(s) 21, 67, 312
Fnu4HI GCNGC 3 cut(s) 35, 225, 251
Fsp4HI GCNGC 3 cut(s) 35, 225, 251
FspBI CTAG 1 cut(s) 324
GluI GCNGC 3 cut(s) 35, 225, 251
GsuI CTGGAG 1 cut(s) 146
HapII CCGG 1 cut(s) 148
Hin1II CATG 3 cut(s) 25, 71, 316
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 85, 151, 300
HpaII CCGG 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 125, 217
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 277, 292
HpyCH4V TGCA 3 cut(s) 54, 212, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 3 cut(s) 25, 71, 316
LpnPI CCDG 5 cut(s) 27, 110, 161, 230, 269
Lsp1109I GCAGC 2 cut(s) 21, 237
LweI GCATC 2 cut(s) 63, 318
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 76, 286
MluCI AATT 2 cut(s) 90, 188
MlyI GAGTC 2 cut(s) 79, 294
MmeI TCCRAC 2 cut(s) 165, 261
MnlI CCTC 3 cut(s) 121, 156, 277
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 2 cut(s) 72, 207
MspI CCGG 1 cut(s) 148
Mva1269I GAATGC 2 cut(s) 212, 226
MwoI GCNNNNNNNGC 1 cut(s) 256
NlaIII CATG 3 cut(s) 25, 71, 316
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PctI GAATGC 2 cut(s) 212, 226
PfeI GAWTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 3 cut(s) 36, 226, 252
PleI GAGTC 2 cut(s) 79, 294
PpsI GAGTC 2 cut(s) 79, 294
PscI ACATGT 1 cut(s) 21
RseI CAYNNNNRTG 2 cut(s) 72, 207
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 3 cut(s) 35, 225, 251
SchI GAGTC 2 cut(s) 79, 294
SetI ASST 3 cut(s) 15, 261, 288
SfaNI GCATC 2 cut(s) 63, 318
SmiMI CAYNNNNRTG 2 cut(s) 72, 207
Sse9I AATT 2 cut(s) 90, 188
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 277, 292
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 90, 188
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 34, 250
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 5, 56
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 262
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 25
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.