Rh1CG233700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Reverse (-)
49043527 .. 49051453
7927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG233700.1

Sequence Viewer

Length: 684 bp
ATGTTCCTCGCCGGACACATCCGCGACGCCGGCCACCTCAGCATATCGCCGGACGGGATTCTTCTGATCTGCACAACCTCTTTCCCGCCTCATCTTGACGCCTATCTCCAACTGCCTCTCGCAACCTTCTCCGCCTTTCGCTGCCGCAAGGAGCGCGTGCTGGACCTCCACCTCCGCCTCTTGGAGAACCGAATCAACAGTACCATCGACGATTATGAAGACGATGATGATGGCTTTTCTGTATGCTTCTCCGGAGCGAAGCCGAACTACAACGCCCTGCTCTATTCTCTGAGGGACAGGGATGCTCTTGCCGTGCACAGCTCTGAGATGGCGCTCATTTCCTCATATCGGGGTTCTTTGGGGGGATTGGATTGGTCAGATTACAGTTATATAGTGAGCATTGAGATGCCGGCCCAGATTTTTAGGCAACTCATCAATTCTCTGAGCTTTTATGGGTTTGAAGCACTTCTGTATATCCTTGCAAAAGCACTGAGATACCGGATTCTGCGTGAGAGGGGTCAATATCCATTTTTGTTGGAATTTGGTCTCCATCATAAGAGTGCATTCCTGAATGCGGCGAGTTTATCAGACAGAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTGGAGGTACCTGTTAATGGACTCGGTAGCATCATGTTTTGTTCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.74

Weight (kDa)

6.23

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 637
AccB1I GGYRCC 1 cut(s) 637
AccB7I CCANNNNNTGG 1 cut(s) 613
AccII CGCG 2 cut(s) 24, 156
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 6 cut(s) 22, 86, 132, 145, 175, 575
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 539
AcyI GRCGYC 2 cut(s) 27, 99
AfaI GTAC 2 cut(s) 202, 639
AfiI CCNNNNNNNGG 5 cut(s) 181, 348, 574, 613, 647
AgsI TTSAA 1 cut(s) 461
AluBI AGCT 3 cut(s) 321, 447, 610
AluI AGCT 3 cut(s) 321, 447, 610
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 551
Alw44I GTGCAC 1 cut(s) 314
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 2 cut(s) 31, 411
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 141, 601
ApoI RAATTY 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 637
AspLEI GCGC 2 cut(s) 156, 334
AspS9I GGNCC 2 cut(s) 163, 412
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 637
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 128, 588
BccI CCATC 4 cut(s) 212, 224, 322, 558
BceAI ACGGC 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 1 cut(s) 675
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 4 cut(s) 142, 145, 576, 602
BlsI GCNGC 4 cut(s) 143, 146, 577, 603
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 412
BmiI GGNNCC 1 cut(s) 639
BmsI GCATC 3 cut(s) 292, 396, 669
BpiI GAAGAC 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 27, 99
BsaI GGTCTC 1 cut(s) 551
BsaWI WCCGGW 2 cut(s) 251, 498
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 348, 574, 613, 647
Bse118I RCCGGY 2 cut(s) 29, 409
BseAI TCCGGA 1 cut(s) 251
BseGI GGATG 2 cut(s) 18, 307
BseLI CCNNNNNNNGG 5 cut(s) 181, 348, 574, 613, 647
BseMII CTCAG 5 cut(s) 52, 281, 315, 434, 482
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 2 cut(s) 128, 588
BsgI GTGCAG 2 cut(s) 55, 587
Bsh1236I CGCG 2 cut(s) 24, 156
BshFI GGCC 2 cut(s) 33, 413
BshNI GGYRCC 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 6 cut(s) 12, 30, 50, 252, 410, 499
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 5 cut(s) 181, 348, 574, 613, 647
BsmAI GTCTC 1 cut(s) 551
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 2 cut(s) 563, 577
BsnI GGCC 2 cut(s) 33, 413
Bso31I GGTCTC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 318
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 6 cut(s) 22, 86, 132, 145, 175, 575
BspANI GGCC 2 cut(s) 33, 413
BspCNI CTCAG 5 cut(s) 51, 282, 316, 435, 483
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 2 cut(s) 24, 156
BspLI GGNNCC 1 cut(s) 639
BspT107I GGYRCC 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 551
BsrFI RCCGGY 2 cut(s) 29, 409
BssAI RCCGGY 2 cut(s) 29, 409
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 2 cut(s) 27, 99
Bst4CI ACNGT 3 cut(s) 200, 386, 628
BstACI GRCGYC 2 cut(s) 27, 99
BstC8I GCNNGC 3 cut(s) 31, 158, 411
BstDEI CTNAG 5 cut(s) 38, 290, 324, 443, 491
BstF5I GGATG 2 cut(s) 18, 307
BstFNI CGCG 2 cut(s) 24, 156
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 2 cut(s) 156, 334
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 30, 39, 153, 607
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 2 cut(s) 24, 156
BstV1I GCAGC 2 cut(s) 128, 588
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 2 cut(s) 33, 413
BtsCI GGATG 2 cut(s) 18, 307
BtsIMutI CAGTG 2 cut(s) 488, 624
Cac8I GCNNGC 3 cut(s) 31, 158, 411
CfoI GCGC 2 cut(s) 156, 334
Cfr10I RCCGGY 2 cut(s) 29, 409
Cfr13I GGNCC 2 cut(s) 163, 412
CseI GACGC 2 cut(s) 35, 107
Csp6I GTAC 2 cut(s) 201, 638
CviAII CATG 1 cut(s) 664
CviJI RGCY 9 cut(s) 33, 234, 262, 321, 413, 447, 601, 610, 679
CviKI_1 RGCY 9 cut(s) 33, 234, 262, 321, 413, 447, 601, 610, 679
CviQI GTAC 2 cut(s) 201, 638
DdeI CTNAG 5 cut(s) 38, 290, 324, 443, 491
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 31
EciI GGCGGA 2 cut(s) 121, 164
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 163
FaeI CATG 1 cut(s) 667
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 663
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 142, 145, 576, 602
FokI GGATG 2 cut(s) 5, 314
Fsp4HI GCNGC 4 cut(s) 142, 145, 576, 602
FspBI CTAG 1 cut(s) 675
GlaI GCGC 2 cut(s) 155, 333
GluI GCNGC 4 cut(s) 142, 145, 576, 602
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 33, 413
HapII CCGG 6 cut(s) 12, 30, 50, 252, 410, 499
HgaI GACGC 2 cut(s) 35, 107
HhaI GCGC 2 cut(s) 156, 334
Hin1I GRCGYC 2 cut(s) 27, 99
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 2 cut(s) 154, 332
HinP1I GCGC 2 cut(s) 154, 332
HinfI GANTC 4 cut(s) 58, 192, 502, 651
HpaII CCGG 6 cut(s) 12, 30, 50, 252, 410, 499
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 6 cut(s) 66, 291, 325, 379, 444, 589
Hpy188III TCNNGA 3 cut(s) 95, 252, 568
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 2 cut(s) 29, 212
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 3 cut(s) 200, 386, 628
HpyCH4V TGCA 5 cut(s) 72, 316, 482, 563, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 39, 153, 607
HpyF3I CTNAG 5 cut(s) 38, 290, 324, 443, 491
Hsp92I GRCGYC 2 cut(s) 27, 99
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 2 cut(s) 154, 332
Kpn2I TCCGGA 1 cut(s) 251
KpnI GGTACC 1 cut(s) 641
KroI GCCGGC 2 cut(s) 29, 409
KroNI GCCGGC 2 cut(s) 31, 411
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 151, 254
Lsp1109I GCAGC 2 cut(s) 128, 588
LweI GCATC 3 cut(s) 292, 396, 669
MaeI CTAG 1 cut(s) 675
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 53, 230
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 2 cut(s) 436, 539
MlyI GAGTC 1 cut(s) 645
MmeI TCCRAC 3 cut(s) 133, 516, 612
MroI TCCGGA 1 cut(s) 251
MroNI GCCGGC 2 cut(s) 29, 409
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 2 cut(s) 404, 558
MspI CCGG 6 cut(s) 12, 30, 50, 252, 410, 499
Mva1269I GAATGC 2 cut(s) 563, 577
MvnI CGCG 2 cut(s) 24, 156
MwoI GCNNNNNNNGC 4 cut(s) 30, 39, 153, 607
NaeI GCCGGC 2 cut(s) 31, 411
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 2 cut(s) 29, 409
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 639
PctI GAATGC 2 cut(s) 563, 577
PdiI GCCGGC 2 cut(s) 31, 411
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 58, 192, 502
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 4 cut(s) 143, 146, 577, 603
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 2 cut(s) 163, 412
RsaI GTAC 2 cut(s) 202, 639
RsaNI GTAC 2 cut(s) 201, 638
RseI CAYNNNNRTG 2 cut(s) 404, 558
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 4 cut(s) 142, 145, 576, 602
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 163, 412
SchI GAGTC 1 cut(s) 645
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 3 cut(s) 292, 396, 669
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 404, 558
Sse9I AATT 2 cut(s) 436, 539
SsiI CCGC 6 cut(s) 22, 86, 132, 145, 175, 575
SspMI CTAG 1 cut(s) 675
TaaI ACNGT 3 cut(s) 200, 386, 628
TaqI TCGA 1 cut(s) 207
TasI AATT 2 cut(s) 436, 539
TauI GCSGC 2 cut(s) 147, 578
TfiI GAWTC 3 cut(s) 58, 192, 502
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 2 cut(s) 495, 631
TseI GCWGC 2 cut(s) 141, 601
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 2 cut(s) 495, 631
Van91I CCANNNNNTGG 1 cut(s) 613
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.