Rh7DG468700

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000347
Physical Location & Seq
Forward (+)
66887428 .. 66889499
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG468700.1

Sequence Viewer

Length: 426 bp
ATGTACCTTCATTCTCCACCAGAACGAGAAATCGCTCTCTTCTCTGCTCGATTCTTGCTTGACAGCAGAGCTTCAAGGCCAAGAACAAGTAATCAAGGAAGAAGGGAGCTCCAGGTTCCGCTCAAGTCTGCCGTGGCGCCACTCATCGACCTGGCCGACTTCGCCGATGTCTCACCGGATGAGGTATTCTTGTTGATTGCCAGCAACTCCATGATCTCCAAGGGGGACTTCGTTATGCAGTGGATTCCGGAGTTGACCTTTGCTCGCGTCATTTGCAACGTTCACGGATCGTTCGTTTTCAACCTAGGCCGGTTGTACTCCAATCTGAATCGCGCCGACGACGACGGTGAGGATTTGATCAGCTTCGTGACTGTGAATTCCGGTCAGTACAACTTTAGTTTTGCGTTTCTTGAGGTTTTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

4.89

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 2 cut(s) 267, 333
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 1 cut(s) 119
AclI AACGTT 1 cut(s) 279
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 3 cut(s) 5, 317, 389
AgsI TTSAA 2 cut(s) 75, 301
AjnI CCWGG 2 cut(s) 111, 150
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 71, 109, 363
AluI AGCT 3 cut(s) 71, 109, 363
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 3 cut(s) 77, 153, 307
ApoI RAATTY 1 cut(s) 376
AspA2I CCTAGG 1 cut(s) 304
AspLEI GCGC 2 cut(s) 139, 335
AsuHPI GGTGA 2 cut(s) 165, 359
AvrII CCTAGG 1 cut(s) 304
BanI GGYRCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 2 cut(s) 113, 152
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 140
BlnI CCTAGG 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 113, 152
BmiI GGNNCC 2 cut(s) 117, 138
BmrFI CCNGG 2 cut(s) 113, 152
BpmI CTGGAG 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 132, 219, 304
BsaWI WCCGGW 3 cut(s) 175, 247, 380
Bse118I RCCGGY 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 113, 152
BseDI CCNNGG 3 cut(s) 132, 219, 304
BseGI GGATG 1 cut(s) 184
Bsh1236I CGCG 2 cut(s) 267, 333
BshFI GGCC 3 cut(s) 79, 155, 309
BshNI GGYRCC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 4 cut(s) 176, 248, 310, 381
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 3 cut(s) 79, 155, 309
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 3 cut(s) 213, 287, 357
BspACI CCGC 1 cut(s) 119
BspANI GGCC 3 cut(s) 79, 155, 309
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 2 cut(s) 267, 333
BspLI GGNNCC 2 cut(s) 117, 138
BspPI GGATC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 132, 219, 304
BssMI GATC 3 cut(s) 213, 287, 357
BssNI GRCGYC 1 cut(s) 137
BssT1I CCWWGG 2 cut(s) 219, 304
Bst2UI CCWGG 2 cut(s) 113, 152
Bst4CI ACNGT 2 cut(s) 347, 373
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 202, 265
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 2 cut(s) 267, 333
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 139, 335
BstKTI GATC 3 cut(s) 216, 290, 360
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 213, 287, 357
BstMWI GCNNNNNNNGC 2 cut(s) 161, 273
BstNI CCWGG 2 cut(s) 113, 152
BstSCI CCNGG 2 cut(s) 111, 150
BstUI CGCG 2 cut(s) 267, 333
BsuRI GGCC 3 cut(s) 79, 155, 309
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 202, 265
CfoI GCGC 2 cut(s) 139, 335
Cfr10I RCCGGY 1 cut(s) 309
CseI GACGC 1 cut(s) 256
Csp6I GTAC 3 cut(s) 4, 316, 388
CviAII CATG 1 cut(s) 211
CviJI RGCY 6 cut(s) 71, 79, 109, 155, 309, 363
CviKI_1 RGCY 6 cut(s) 71, 79, 109, 155, 309, 363
CviQI GTAC 3 cut(s) 4, 316, 388
DinI GGCGCC 1 cut(s) 138
DpnI GATC 3 cut(s) 215, 289, 359
DpnII GATC 3 cut(s) 213, 287, 357
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 219, 304
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 111, 150
EcoT14I CCWWGG 2 cut(s) 219, 304
EcoT38I GRGCYC 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 219, 304
FaeI CATG 1 cut(s) 214
FaiI YATR 2 cut(s) 212, 236
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 239
FatI CATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 357
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 1 cut(s) 305
GlaI GCGC 2 cut(s) 138, 334
GsuI CTGGAG 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 3 cut(s) 79, 155, 309
HapII CCGG 4 cut(s) 176, 248, 310, 381
HgaI GACGC 1 cut(s) 256
HhaI GCGC 2 cut(s) 139, 335
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 2 cut(s) 137, 333
HinP1I GCGC 2 cut(s) 137, 333
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 3 cut(s) 51, 244, 328
HpaII CCGG 4 cut(s) 176, 248, 310, 381
HphI GGTGA 2 cut(s) 165, 359
Hpy166II GTNNAC 2 cut(s) 255, 283
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 3 cut(s) 248, 367, 410
Hpy8I GTNNAC 2 cut(s) 255, 283
Hpy99I CGWCG 3 cut(s) 341, 344, 347
HpyAV CCTTC 2 cut(s) 17, 96
HpyCH4III ACNGT 2 cut(s) 347, 373
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 238, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 273
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 2 cut(s) 137, 333
KasI GGCGCC 1 cut(s) 136
Kpn2I TCCGGA 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 3 cut(s) 213, 287, 357
LmnI GCTCC 2 cut(s) 106, 114
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 367
MalI GATC 3 cut(s) 215, 289, 359
MbiI CCGCTC 1 cut(s) 121
MboI GATC 3 cut(s) 213, 287, 357
MboII GAAGA 2 cut(s) 31, 111
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 376
Mly113I GGCGCC 1 cut(s) 137
MnlI CCTC 3 cut(s) 175, 343, 406
MroI TCCGGA 1 cut(s) 247
MspI CCGG 4 cut(s) 176, 248, 310, 381
MspR9I CCNGG 2 cut(s) 113, 152
MvaI CCWGG 2 cut(s) 113, 152
MvnI CGCG 2 cut(s) 267, 333
MwoI GCNNNNNNNGC 2 cut(s) 161, 273
NarI GGCGCC 1 cut(s) 137
NdeII GATC 3 cut(s) 213, 287, 357
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 117, 138
NmuCI GTSAC 1 cut(s) 367
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 291
PfeI GAWTC 3 cut(s) 51, 244, 328
PluTI GGCGCC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 111, 150
PspGI CCWGG 2 cut(s) 111, 150
PspN4I GGNNCC 2 cut(s) 117, 138
RsaI GTAC 3 cut(s) 5, 317, 389
RsaNI GTAC 3 cut(s) 4, 316, 388
SacI GAGCTC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 213, 287, 357
ScrFI CCNGG 2 cut(s) 113, 152
SduI GDGCHC 1 cut(s) 111
SfoI GGCGCC 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 122, 410
SmoI CTYRAG 2 cut(s) 122, 410
Sse9I AATT 1 cut(s) 376
SsiI CCGC 1 cut(s) 119
SspDI GGCGCC 1 cut(s) 136
SspMI CTAG 1 cut(s) 305
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 111, 150
StyI CCWWGG 2 cut(s) 219, 304
TaaI ACNGT 2 cut(s) 347, 373
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 49, 147
TasI AATT 1 cut(s) 376
TatI WGTACW 2 cut(s) 315, 387
TfiI GAWTC 3 cut(s) 51, 244, 328
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 1 cut(s) 245
XapI RAATTY 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 304
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.