RchiOBHm_Chr1g0353861

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000347
Physical Location & Seq
Reverse (-)
47068355 .. 47070334
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57947

Sequence Viewer

Length: 1005 bp
ATGAGCGCCGACTCGTGGGAGACGGCGCCGATTTCACCGGAGGAGGAGGTCATGTCGGAGGCGGCGGCGGCAGCGGCGGCGTCTTCATCATCGGAGGAGGTTGTGGAAGACACAGACTCTGATCAGACCACCATCGCGTCGTCGTCGTCGTCCTCGGCGGAGAAGAGGCAAAATCTCTGGTTTTATGCGGAGCTGAACCAAGTCCGTCTTCTCCAGAGGGCCTTGAGACCCCTGTTTCAGACTGCCTACACCGACCGAGAGTACCCTGACGACATGTTCCACGCCGGACACATCCGCGACGCCGGCCACCTCAGCATATCGCCGGACGGGATTCTTCTGATCTGCACAACCTCTTTCCCGCCTCATCTTGACGCCTATCTCCAACTGCCTCTCGCAAACTTCTCCGCCTTTCGCTGCCGCAAGGAGCGCGTGCTGGACCTCCACCTCCGCCTCTTGGAGAACCGAATCAACAGTACCATCGACGATTATGAAGACGATGATGATGGCATTTCTGTATGCTTCTCTGGAGCGAAGCCGAACTACAACGCCCTGCTCTATTCTCTGAGGGACAGGGATGCCGTTGCCGTGCACAGCTCTGAGATGGCGCTCATTTCCTCATATCGGGGTTCTTTGGGGGGATTGGATTGGTCAGATTACAGTTATATAGTGAGCATTGAGATGCCGGCCCAGATTTTTAGGCAACTTATCAATTCTCTGAGCTTTTATGGGTTTGAAGTTCATGCCGATGTGACAGCGACTCGAATTATGTTCCGTGTAGTCAATAAAGTGGTTTTTCTGGAGGAAGGGGCTGAGAGATACCGGATTCTGCGTGAGAGGGGTCAATATCCATTTTTGTTGGAATTCGGTATCCATCATAAGAGTGCATTCCTGAATGCGGCGAGTTTATCAGACAGAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTGGAGGTACCTGTTAATGGACTCGGTAGCATCATGTTTTGTTCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

334

Amino Acids

37.59

Weight (kDa)

4.97

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 958
AccB1I GGYRCC 2 cut(s) 25, 958
AccB7I CCANNNNNTGG 1 cut(s) 934
AccII CGCG 3 cut(s) 137, 297, 429
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 860
AcyI GRCGYC 4 cut(s) 26, 80, 300, 372
AfaI GTAC 3 cut(s) 263, 475, 960
AfiI CCNNNNNNNGG 6 cut(s) 15, 454, 621, 895, 934, 968
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 734
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 4 cut(s) 193, 594, 720, 931
AluI AGCT 4 cut(s) 193, 594, 720, 931
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 14, 220
Alw44I GTGCAC 1 cut(s) 587
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 3 cut(s) 219, 304, 684
ApaLI GTGCAC 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 71, 414, 922
ApoI RAATTY 1 cut(s) 860
Asp718I GGTACC 1 cut(s) 958
AspLEI GCGC 4 cut(s) 8, 28, 429, 607
AspS9I GGNCC 3 cut(s) 219, 436, 685
AsuHPI GGTGA 1 cut(s) 27
AvaII GGWCC 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 591
BanI GGYRCC 2 cut(s) 25, 958
BarI GAAGNNNNNNTAC 2 cut(s) 524, 556
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 4 cut(s) 75, 114, 200, 498
Bbv12I GWGCWC 1 cut(s) 591
BbvCI CCTCAGC 1 cut(s) 311
BbvI GCAGC 3 cut(s) 83, 401, 909
BccI CCATC 5 cut(s) 140, 485, 497, 595, 879
BceAI ACGGC 3 cut(s) 39, 563, 569
BciVI GTATCC 1 cut(s) 878
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 14, 220
BfaI CTAG 1 cut(s) 996
BfoI RGCGCY 3 cut(s) 9, 29, 608
BfuI GTATCC 1 cut(s) 878
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 3 cut(s) 219, 436, 685
BmiI GGNNCC 2 cut(s) 27, 960
BmsI GCATC 3 cut(s) 565, 669, 990
BpiI GAAGAC 4 cut(s) 75, 114, 200, 498
BpmI CTGGAG 3 cut(s) 197, 546, 818
Bpu10I CCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 244
BsaHI GRCGYC 4 cut(s) 26, 80, 300, 372
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 2 cut(s) 37, 819
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 454, 621, 895, 934, 968
Bse118I RCCGGY 2 cut(s) 302, 682
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 291, 580
BseLI CCNNNNNNNGG 6 cut(s) 15, 454, 621, 895, 934, 968
BseMII CTCAG 5 cut(s) 325, 554, 588, 707, 801
BseRI GAGGAG 3 cut(s) 56, 59, 110
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 3 cut(s) 83, 401, 909
BsgI GTGCAG 2 cut(s) 328, 908
Bsh1236I CGCG 3 cut(s) 137, 297, 429
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 221, 306, 686
BshNI GGYRCC 2 cut(s) 25, 958
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 6 cut(s) 38, 285, 303, 323, 683, 820
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 6 cut(s) 15, 454, 621, 895, 934, 968
BsmAI GTCTC 2 cut(s) 14, 220
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 2 cut(s) 884, 898
BsnI GGCC 3 cut(s) 221, 306, 686
Bso31I GGTCTC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 2 cut(s) 121, 339
BspANI GGCC 3 cut(s) 221, 306, 686
BspCNI CTCAG 5 cut(s) 324, 555, 589, 708, 802
BspFNI CGCG 3 cut(s) 137, 297, 429
BspLI GGNNCC 2 cut(s) 27, 960
BspT107I GGYRCC 2 cut(s) 25, 958
BspTNI GGTCTC 1 cut(s) 220
BsrFI RCCGGY 2 cut(s) 302, 682
BssAI RCCGGY 2 cut(s) 302, 682
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 121, 339
BssNI GRCGYC 4 cut(s) 26, 80, 300, 372
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 3 cut(s) 473, 659, 949
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 4 cut(s) 26, 80, 300, 372
BstC8I GCNNGC 3 cut(s) 304, 431, 684
BstDEI CTNAG 5 cut(s) 311, 563, 597, 716, 810
BstF5I GGATG 2 cut(s) 291, 580
BstFNI CGCG 3 cut(s) 137, 297, 429
BstH2I RGCGCY 3 cut(s) 9, 29, 608
BstHHI GCGC 4 cut(s) 8, 28, 429, 607
BstKTI GATC 2 cut(s) 124, 342
BstMAI GTCTC 2 cut(s) 14, 220
BstMBI GATC 2 cut(s) 121, 339
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 8 cut(s) 68, 71, 74, 77, 303, 312, 426, 928
BstNSI RCATGY 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 591
BstUI CGCG 3 cut(s) 137, 297, 429
BstV1I GCAGC 3 cut(s) 83, 401, 909
BstV2I GAAGAC 4 cut(s) 75, 114, 200, 498
BsuI GTATCC 1 cut(s) 878
BsuRI GGCC 3 cut(s) 221, 306, 686
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 291, 580
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 3 cut(s) 304, 431, 684
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 4 cut(s) 8, 28, 429, 607
Cfr10I RCCGGY 2 cut(s) 302, 682
Cfr13I GGNCC 3 cut(s) 219, 436, 685
CseI GACGC 4 cut(s) 69, 126, 308, 380
Csp6I GTAC 3 cut(s) 262, 474, 959
CviAII CATG 4 cut(s) 52, 274, 740, 985
CviQI GTAC 3 cut(s) 262, 474, 959
DdeI CTNAG 5 cut(s) 311, 563, 597, 716, 810
DinI GGCGCC 1 cut(s) 27
DpnI GATC 2 cut(s) 123, 341
DpnII GATC 2 cut(s) 121, 339
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 3 cut(s) 173, 394, 437
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 860
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 55, 277, 743, 988
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 581
FatI CATG 4 cut(s) 51, 273, 739, 984
FauI CCCGC 1 cut(s) 366
FbaI TGATCA 1 cut(s) 121
FokI GGATG 2 cut(s) 278, 587
FspBI CTAG 1 cut(s) 996
GlaI GCGC 4 cut(s) 7, 27, 428, 606
GsuI CTGGAG 3 cut(s) 197, 546, 818
HaeII RGCGCY 3 cut(s) 9, 29, 608
HaeIII GGCC 3 cut(s) 221, 306, 686
HapII CCGG 6 cut(s) 38, 285, 303, 323, 683, 820
HgaI GACGC 4 cut(s) 69, 126, 308, 380
HhaI GCGC 4 cut(s) 8, 28, 429, 607
Hin1I GRCGYC 4 cut(s) 26, 80, 300, 372
Hin1II CATG 4 cut(s) 55, 277, 743, 988
Hin6I GCGC 4 cut(s) 6, 26, 427, 605
HinP1I GCGC 4 cut(s) 6, 26, 427, 605
HinfI GANTC 7 cut(s) 11, 116, 331, 465, 757, 823, 972
HpaII CCGG 6 cut(s) 38, 285, 303, 323, 683, 820
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 589
Hpy188III TCNNGA 5 cut(s) 214, 368, 525, 797, 889
Hpy8I GTNNAC 1 cut(s) 589
Hpy99I CGWCG 6 cut(s) 142, 145, 148, 151, 302, 485
HpyAV CCTTC 1 cut(s) 797
HpyCH4III ACNGT 3 cut(s) 473, 659, 949
HpyCH4V TGCA 4 cut(s) 345, 589, 884, 925
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 71, 74, 77, 303, 312, 426, 928
HpyF3I CTNAG 5 cut(s) 311, 563, 597, 716, 810
Hsp92I GRCGYC 4 cut(s) 26, 80, 300, 372
Hsp92II CATG 4 cut(s) 55, 277, 743, 988
HspAI GCGC 4 cut(s) 6, 26, 427, 605
KasI GGCGCC 1 cut(s) 25
KpnI GGTACC 1 cut(s) 962
KroI GCCGGC 2 cut(s) 302, 682
KroNI GCCGGC 2 cut(s) 304, 684
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 121, 339
LmnI GCTCC 3 cut(s) 190, 424, 527
Lsp1109I GCAGC 3 cut(s) 83, 401, 909
LweI GCATC 3 cut(s) 565, 669, 990
MaeI CTAG 1 cut(s) 996
MaeIII GTNAC 1 cut(s) 748
MalI GATC 2 cut(s) 123, 341
MboI GATC 2 cut(s) 121, 339
MboII GAAGA 6 cut(s) 75, 119, 175, 200, 326, 503
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 3 cut(s) 709, 762, 860
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 4 cut(s) 5, 110, 751, 966
MmeI TCCRAC 4 cut(s) 36, 406, 837, 933
MroNI GCCGGC 2 cut(s) 302, 682
MseI TTAA 1 cut(s) 966
MslI CAYNNNNRTG 3 cut(s) 677, 744, 879
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 6 cut(s) 38, 285, 303, 323, 683, 820
Mva1269I GAATGC 2 cut(s) 884, 898
MvnI CGCG 3 cut(s) 137, 297, 429
MwoI GCNNNNNNNGC 8 cut(s) 68, 71, 74, 77, 303, 312, 426, 928
NaeI GCCGGC 2 cut(s) 304, 684
NarI GGCGCC 1 cut(s) 26
NdeII GATC 2 cut(s) 121, 339
NgoMIV GCCGGC 2 cut(s) 302, 682
NlaIII CATG 4 cut(s) 55, 277, 743, 988
NlaIV GGNNCC 2 cut(s) 27, 960
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 748
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PctI GAATGC 2 cut(s) 884, 898
PdiI GCCGGC 2 cut(s) 304, 684
PfeI GAWTC 3 cut(s) 331, 465, 823
PflMI CCANNNNNTGG 1 cut(s) 934
PleI GAGTC 4 cut(s) 5, 110, 751, 966
PluTI GGCGCC 1 cut(s) 29
PpsI GAGTC 4 cut(s) 5, 110, 751, 966
PscI ACATGT 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 27, 960
PspPI GGNCC 3 cut(s) 219, 436, 685
PstNI CAGNNNCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 263, 475, 960
RsaNI GTAC 3 cut(s) 262, 474, 959
RseI CAYNNNNRTG 3 cut(s) 677, 744, 879
SaqAI TTAA 1 cut(s) 966
Sau3AI GATC 2 cut(s) 121, 339
Sau96I GGNCC 3 cut(s) 219, 436, 685
SchI GAGTC 4 cut(s) 5, 110, 751, 966
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 3 cut(s) 565, 669, 990
SfoI GGCGCC 1 cut(s) 27
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 3 cut(s) 677, 744, 879
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 3 cut(s) 709, 762, 860
SspDI GGCGCC 1 cut(s) 25
SspMI CTAG 1 cut(s) 996
TaaI ACNGT 3 cut(s) 473, 659, 949
TaqI TCGA 2 cut(s) 480, 760
TaqII GACCGA 1 cut(s) 270
TasI AATT 3 cut(s) 709, 762, 860
TauI GCSGC 7 cut(s) 65, 68, 71, 77, 80, 420, 899
TfiI GAWTC 3 cut(s) 331, 465, 823
Tru1I TTAA 1 cut(s) 966
Tru9I TTAA 1 cut(s) 966
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 3 cut(s) 71, 414, 922
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 3 cut(s) 75, 504, 728
TspGWI ACGGA 2 cut(s) 194, 761
TspRI CASTG 1 cut(s) 952
Van91I CCANNNNNTGG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 1 cut(s) 860
XceI RCATGY 1 cut(s) 277
XspI CTAG 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.