Rh1CG233500

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Forward (+)
49036542 .. 49038986
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG233500.1

Sequence Viewer

Length: 873 bp
ATGGCGTCGCCGTCACCGGAGGAAGAGTTTCCGGACAATCTCTGGTTTCGTGTGGAGATGAACGGAGCTCAACTGTTCCAGAAGGCCTTGAGACCCCTGTTTCAGTCCGCCTACTCCGACAAAGAGTACCCGGAAGAAATGTTCCTCGCCGGAAAGATCCACGACGACGGCTTGATGAGCATTTCCAAGACGGACGGTGTTTCACTGGCCTCCAAAGCCACTTTCCCGTCTACTGTTTACACAACTCTGTCGCTGCCGATTTCGCCCTTCACACAATTCCGCTGCCGCCAGGACCGCCTGCTCCGCCTCCACCTCGGCCTCTTGGAGCACCGAATCAACGCCACCGTCGGCGGCTATGATTCTGACGACGACGTTTCCATACGCTTCTCCGGAGAGAGCACCAACTACAACACCTTGATCTATGGCGTCAGGGACGGTGGCGCGGACGGTGCTGAACTGGAAACCTCTGAAATTGCACTGATGAACTCGAAGCCGGGTCGGGTGGTTGGGCATGTGCCGAAGTATCAACTGAGCATTGAGATGCCGGCGGAGACTTTTATGCAACTCATCGATTTTCTGAGCTTGTATGGATCTGCAGTTAAGGCCACCGTGACAAATACTCAAATCATGTTCTGTGTAGTCAATAAGGAGGTTGTTTTGAGGGCAGAGGCTGAGAGATACAAGATTGTGCATTCCGCAGGTCAGTATCCATATTTGTTGGAATTTGGTCTCGATCAAAAGAGTGCATTCCTGAATGCGGCTATTCTATCAAACATAGTTAAGCTGCACCAGCTTACTGATTCACGCACCGTGTTGGAGGTACCTATAAGTGCACTCGGCAGCCTCATGTTTTACTCTAAGCTTAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

290

Amino Acids

32.36

Weight (kDa)

5.44

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 689
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 820
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 443
AccIII TCCGGA 2 cut(s) 31, 389
AclWI GGATC 2 cut(s) 151, 598
AcsI RAATTY 1 cut(s) 722
AcyI GRCGYC 2 cut(s) 5, 426
AfaI GTAC 2 cut(s) 128, 822
AfiI CCNNNNNNNGG 1 cut(s) 757
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 5 cut(s) 68, 582, 784, 793, 862
AluI AGCT 5 cut(s) 68, 582, 784, 793, 862
Alw21I GWGCWC 4 cut(s) 70, 330, 401, 835
Alw26I GTCTC 3 cut(s) 85, 545, 734
Alw44I GTGCAC 1 cut(s) 831
AlwI GGATC 2 cut(s) 151, 598
AlwNI CAGNNNCTG 1 cut(s) 671
Aor13HI TCCGGA 2 cut(s) 31, 389
AoxI GGCC 4 cut(s) 84, 207, 316, 603
ApaLI GTGCAC 1 cut(s) 831
ApeKI GCWGC 4 cut(s) 253, 282, 784, 840
ApoI RAATTY 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 2 cut(s) 131, 495
AsuHPI GGTGA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 835
BanI GGYRCC 1 cut(s) 820
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 4 cut(s) 70, 330, 401, 835
BbvI GCAGC 4 cut(s) 240, 269, 771, 852
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 717
BcnI CCSGG 2 cut(s) 131, 495
BcoDI GTCTC 3 cut(s) 85, 545, 734
BfmI CTRYAG 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 689
BfuI GTATCC 1 cut(s) 717
BisI GCNGC 7 cut(s) 254, 283, 286, 352, 759, 785, 841
BlsI GCNGC 7 cut(s) 255, 284, 287, 353, 760, 786, 842
Bme1390I CCNGG 3 cut(s) 131, 290, 495
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 822
BmrFI CCNGG 3 cut(s) 131, 290, 495
BmsI GCATC 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 863
BpuEI CTTGAG 1 cut(s) 109
BpuMI CCSGG 2 cut(s) 131, 495
Bsa29I ATCGAT 1 cut(s) 570
BsaHI GRCGYC 2 cut(s) 5, 426
BsaI GGTCTC 2 cut(s) 85, 734
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 3 cut(s) 16, 31, 389
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 757
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 2 cut(s) 210, 462
BseAI TCCGGA 2 cut(s) 31, 389
BseBI CCWGG 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 757
BseMII CTCAG 3 cut(s) 521, 569, 663
BseNI ACTGG 2 cut(s) 210, 462
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 4 cut(s) 240, 269, 771, 852
BsgI GTGCAG 1 cut(s) 770
Bsh1236I CGCG 1 cut(s) 443
BshFI GGCC 4 cut(s) 86, 209, 318, 605
BshNI GGYRCC 1 cut(s) 820
BshVI ATCGAT 1 cut(s) 570
BsiHKAI GWGCWC 4 cut(s) 70, 330, 401, 835
BsiSI CCGG 7 cut(s) 17, 32, 131, 150, 390, 494, 545
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 757
BsmAI GTCTC 3 cut(s) 85, 545, 734
BsmFI GGGAC 1 cut(s) 446
BsmI GAATGC 3 cut(s) 691, 746, 760
BsnI GGCC 4 cut(s) 86, 209, 318, 605
Bso31I GGTCTC 2 cut(s) 85, 734
Bsp1286I GDGCHC 4 cut(s) 70, 330, 401, 835
Bsp13I TCCGGA 2 cut(s) 31, 389
Bsp143I GATC 4 cut(s) 156, 417, 590, 733
BspANI GGCC 4 cut(s) 86, 209, 318, 605
BspCNI CTCAG 3 cut(s) 522, 570, 664
BspDI ATCGAT 1 cut(s) 570
BspEI TCCGGA 2 cut(s) 31, 389
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 1 cut(s) 822
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 2 cut(s) 151, 598
BspT107I GGYRCC 1 cut(s) 820
BspTNI GGTCTC 2 cut(s) 85, 734
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 2 cut(s) 210, 462
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 4 cut(s) 156, 417, 590, 733
BssNI GRCGYC 2 cut(s) 5, 426
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 8 cut(s) 75, 197, 235, 346, 437, 449, 610, 811
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 2 cut(s) 5, 426
BstC8I GCNNGC 2 cut(s) 299, 546
BstDEI CTNAG 5 cut(s) 530, 578, 672, 858, 863
BstFNI CGCG 1 cut(s) 443
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 4 cut(s) 159, 420, 593, 736
BstMAI GTCTC 3 cut(s) 85, 545, 734
BstMBI GATC 4 cut(s) 156, 417, 590, 733
BstMWI GCNNNNNNNGC 8 cut(s) 177, 215, 262, 294, 303, 449, 602, 790
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 3 cut(s) 129, 288, 493
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 835
BstUI CGCG 1 cut(s) 443
BstV1I GCAGC 4 cut(s) 240, 269, 771, 852
BstX2I RGATCY 2 cut(s) 156, 590
BstYI RGATCY 2 cut(s) 156, 590
Bsu15I ATCGAT 1 cut(s) 570
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 4 cut(s) 86, 209, 318, 605
BsuTUI ATCGAT 1 cut(s) 570
BtsIMutI CAGTG 2 cut(s) 203, 476
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 2 cut(s) 299, 546
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 1 cut(s) 443
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 292
ClaI ATCGAT 1 cut(s) 570
CseI GACGC 1 cut(s) 415
Csp6I GTAC 2 cut(s) 127, 821
CviAII CATG 3 cut(s) 512, 628, 847
CviQI GTAC 2 cut(s) 127, 821
DdeI CTNAG 5 cut(s) 530, 578, 672, 858, 863
DpnI GATC 4 cut(s) 158, 419, 592, 735
DpnII GATC 4 cut(s) 156, 417, 590, 733
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 3 cut(s) 97, 293, 563
Ecl136II GAGCTC 1 cut(s) 68
Eco147I AGGCCT 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 2 cut(s) 85, 734
Eco47I GGWCC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 3 cut(s) 515, 631, 850
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 511, 627, 846
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 7 cut(s) 254, 283, 286, 352, 759, 785, 841
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 7 cut(s) 254, 283, 286, 352, 759, 785, 841
GlaI GCGC 1 cut(s) 442
GluI GCNGC 7 cut(s) 254, 283, 286, 352, 759, 785, 841
HaeIII GGCC 4 cut(s) 86, 209, 318, 605
HapII CCGG 7 cut(s) 17, 32, 131, 150, 390, 494, 545
HgaI GACGC 1 cut(s) 415
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 2 cut(s) 5, 426
Hin1II CATG 3 cut(s) 515, 631, 850
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 3 cut(s) 333, 359, 800
HpaII CCGG 7 cut(s) 17, 32, 131, 150, 390, 494, 545
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 3 cut(s) 231, 238, 833
Hpy188I TCNGA 4 cut(s) 118, 364, 469, 579
Hpy188III TCNNGA 5 cut(s) 32, 79, 390, 731, 751
Hpy8I GTNNAC 3 cut(s) 231, 238, 833
Hpy99I CGWCG 6 cut(s) 10, 167, 170, 350, 371, 374
HpyAV CCTTC 2 cut(s) 76, 277
HpyCH4III ACNGT 8 cut(s) 75, 197, 235, 346, 437, 449, 610, 811
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 7 cut(s) 476, 562, 596, 691, 746, 787, 833
HpyF10VI GCNNNNNNNGC 8 cut(s) 177, 215, 262, 294, 303, 449, 602, 790
HpyF3I CTNAG 5 cut(s) 530, 578, 672, 858, 863
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 2 cut(s) 5, 426
Hsp92II CATG 3 cut(s) 515, 631, 850
HspAI GCGC 1 cut(s) 441
Kpn2I TCCGGA 2 cut(s) 31, 389
KpnI GGTACC 1 cut(s) 824
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Kzo9I GATC 4 cut(s) 156, 417, 590, 733
LmnI GCTCC 3 cut(s) 65, 306, 325
Lsp1109I GCAGC 4 cut(s) 240, 269, 771, 852
LweI GCATC 1 cut(s) 531
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 12, 610
MalI GATC 4 cut(s) 158, 419, 592, 735
MboI GATC 4 cut(s) 156, 417, 590, 733
MboII GAAGA 2 cut(s) 35, 146
MflI RGATCY 2 cut(s) 156, 590
MhlI GDGCHC 4 cut(s) 70, 330, 401, 835
MluCI AATT 3 cut(s) 275, 471, 722
MmeI TCCRAC 3 cut(s) 141, 699, 795
MroI TCCGGA 2 cut(s) 31, 389
MroNI GCCGGC 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 2 cut(s) 600, 780
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 7 cut(s) 17, 32, 131, 150, 390, 494, 545
MspR9I CCNGG 3 cut(s) 131, 290, 495
Mva1269I GAATGC 3 cut(s) 691, 746, 760
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 8 cut(s) 177, 215, 262, 294, 303, 449, 602, 790
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 2 cut(s) 131, 495
NdeII GATC 4 cut(s) 156, 417, 590, 733
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 3 cut(s) 515, 631, 850
NlaIV GGNNCC 1 cut(s) 822
NmeAIII GCCGAG 2 cut(s) 294, 816
NmuCI GTSAC 2 cut(s) 12, 610
NspI RCATGY 1 cut(s) 515
PceI AGGCCT 1 cut(s) 86
PctI GAATGC 3 cut(s) 691, 746, 760
PdiI GCCGGC 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 333, 359, 800
PkrI GCNGC 7 cut(s) 255, 284, 287, 353, 760, 786, 842
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 822
PspPI GGNCC 1 cut(s) 292
PstI CTGCAG 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 156, 590
RsaI GTAC 2 cut(s) 128, 822
RsaNI GTAC 2 cut(s) 127, 821
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 600, 780
SatI GCNGC 7 cut(s) 254, 283, 286, 352, 759, 785, 841
Sau3AI GATC 4 cut(s) 156, 417, 590, 733
Sau96I GGNCC 1 cut(s) 292
ScrFI CCNGG 3 cut(s) 131, 290, 495
SduI GDGCHC 4 cut(s) 70, 330, 401, 835
SfaNI GCATC 1 cut(s) 531
SfcI CTRYAG 1 cut(s) 594
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 3 cut(s) 275, 471, 722
SseBI AGGCCT 1 cut(s) 86
SstI GAGCTC 1 cut(s) 70
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 129, 288, 493
TaaI ACNGT 8 cut(s) 75, 197, 235, 346, 437, 449, 610, 811
TaiI ACGT 1 cut(s) 375
TaqI TCGA 3 cut(s) 488, 570, 732
TasI AATT 3 cut(s) 275, 471, 722
TauI GCSGC 3 cut(s) 288, 354, 761
TfiI GAWTC 3 cut(s) 333, 359, 800
Tru1I TTAA 2 cut(s) 600, 780
Tru9I TTAA 2 cut(s) 600, 780
TscAI CASTG 2 cut(s) 210, 483
TseFI GTSAC 2 cut(s) 12, 610
TseI GCWGC 4 cut(s) 253, 282, 784, 840
Tsp45I GTSAC 2 cut(s) 12, 610
TspDTI ATGAA 2 cut(s) 74, 497
TspGWI ACGGA 2 cut(s) 78, 206
TspRI CASTG 2 cut(s) 210, 483
VneI GTGCAC 1 cut(s) 831
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 722
XceI RCATGY 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.