Rroxscaffold_4G00301410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000347
Physical Location & Seq
Forward (+)
21780574 .. 21782920
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301410.1

Sequence Viewer

Length: 882 bp
ATGCCGCGGTGGTTCGACCTCAAGCTTGATGGGCGCAAAGCGATTCTGCTGAAGAAGGCCGTCGGAGCCATGGCTCAAGTAGCCTTTACGGACAGAGAGCTCGCCGGCCGCCCCCAAAACGCCGACCTCTGCATCACTCCGGAGATCGTCGCACTGGTCTCCAAAACCAAGTCTACTGATGCCGTAGGCGTGCTGCTGATGCCGGAACAGTTGGTGTCGAGCTTCGAGTGCTACGAAAGCCGGAATCTGCAGTTCAATCTGCACAACTTGCTTTGCCTATTGGAGCAGAACACTGAGTTTGCGGTCACTCTTTATGGCGAGGTAGAAGATGAGGATGTGATTTGGTACGAGCTTGAGGAAGGTTTTCGCACGATTTACACTTCTACAATGCGGCTGGATTCTTGGACTAAGAATGAGATGGACCTGGGTTTCTTGGTATATAAATATCCAGTGCGCCTTGGCTTGTCTTCAAAGAGCTTTTGTGACCTTATCACTGATATGGGTTCTCATGGGTGTACAGTTCATGCCACACTGTTCAAAAATGCAGTTGTTTTCCGTGTAGTGAATTACGAGCTTGTCTTCCCAACAGAGCCCTTGATTTGCGAGACTCAGAGTGATCGTGGATTTCCTTGTGTGTTGAAGTTTGATATCCAGCACAAGAGCGCGCTTCTCAATGCCGCTACATTGTCAGAGATGATATGGATATGGTTCTCGGATTCGTTCACCATGCTCAATTTCCCAATTCGTGGCCTTGATAGAAATGAGCTTAGTATGACCTTGATAGAGGCAGTTTTACATGATGAAGAAATAGATTTGAGTACATGGTTACTGGCGGAGTATATTGACTTTGATAGAATGCAGTTTTACATGATGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.73

Weight (kDa)

4.78

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 1 cut(s) 173
AccII CGCG 2 cut(s) 7, 665
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 7 cut(s) 5, 7, 109, 302, 391, 678, 833
AcoI YGGCCR 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 3 cut(s) 347, 517, 820
AfiI CCNNNNNNNGG 1 cut(s) 746
AgsI TTSAA 4 cut(s) 256, 471, 538, 640
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 7 cut(s) 25, 100, 222, 352, 477, 574, 766
AluI AGCT 7 cut(s) 25, 100, 222, 352, 477, 574, 766
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 163, 599
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 3 cut(s) 57, 106, 748
ApeKI GCWGC 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 4 cut(s) 36, 456, 665, 667
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 715
AvaII GGWCC 1 cut(s) 421
BanII GRGCYC 2 cut(s) 102, 594
BbsI GAAGAC 2 cut(s) 459, 571
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 23, 412
BceAI ACGGC 2 cut(s) 44, 167
BciT130I CCWGG 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 163, 599
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 5 cut(s) 5, 109, 194, 392, 678
BlsI GCNGC 5 cut(s) 6, 110, 195, 393, 679
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 3 cut(s) 141, 169, 189
BpiI GAAGAC 2 cut(s) 459, 571
BpuEI CTTGAG 3 cut(s) 5, 60, 374
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 4 cut(s) 5, 69, 424, 457
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 3 cut(s) 159, 449, 834
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 4 cut(s) 5, 69, 424, 457
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMII CTCAG 2 cut(s) 285, 623
BseNI ACTGG 3 cut(s) 159, 449, 834
BsePI GCGCGC 1 cut(s) 663
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 7, 665
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 59, 108, 750
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 4 cut(s) 105, 140, 203, 241
BslI CCNNNNNNNGG 1 cut(s) 746
BsmAI GTCTC 2 cut(s) 163, 599
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 3 cut(s) 59, 108, 750
Bso31I GGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 102, 594
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 515
Bsp143I GATC 2 cut(s) 144, 616
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 7 cut(s) 5, 7, 109, 302, 391, 678, 833
BspANI GGCC 3 cut(s) 59, 108, 750
BspCNI CTCAG 2 cut(s) 286, 622
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 2 cut(s) 7, 665
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 515
BsrI ACTGG 3 cut(s) 159, 449, 834
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 5, 69, 424, 457
BssHII GCGCGC 1 cut(s) 663
BssMI GATC 2 cut(s) 144, 616
BssT1I CCWWGG 2 cut(s) 69, 457
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 3 cut(s) 210, 520, 534
BstAPI GCANNNNNTGC 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 102, 106, 191, 665
BstDEI CTNAG 4 cut(s) 294, 408, 609, 767
BstDSI CCRYGG 2 cut(s) 5, 69
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 2 cut(s) 7, 665
BstHHI GCGC 4 cut(s) 36, 456, 665, 667
BstKTI GATC 2 cut(s) 147, 619
BstMAI GTCTC 2 cut(s) 163, 599
BstMBI GATC 2 cut(s) 144, 616
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 7 cut(s) 31, 65, 80, 199, 228, 237, 268
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 2 cut(s) 7, 665
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 459, 571
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 3 cut(s) 59, 108, 750
BtgI CCRYGG 2 cut(s) 5, 69
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 5 cut(s) 152, 291, 456, 492, 530
Cac8I GCNNGC 4 cut(s) 102, 106, 191, 665
CfoI GCGC 4 cut(s) 36, 456, 665, 667
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 421
Cfr42I CCGCGG 1 cut(s) 8
Csp6I GTAC 3 cut(s) 346, 516, 819
CviAII CATG 7 cut(s) 70, 509, 524, 727, 797, 822, 868
CviQI GTAC 3 cut(s) 346, 516, 819
DdeI CTNAG 4 cut(s) 294, 408, 609, 767
DpnI GATC 2 cut(s) 146, 618
DpnII GATC 2 cut(s) 144, 616
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
EciI GGCGGA 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 69, 457
Eco24I GRGCYC 2 cut(s) 102, 594
Eco31I GGTCTC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 423
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 2 cut(s) 69, 457
EcoT38I GRGCYC 2 cut(s) 102, 594
ErhI CCWWGG 2 cut(s) 69, 457
FaeI CATG 7 cut(s) 73, 512, 527, 730, 800, 825, 871
FatI CATG 7 cut(s) 69, 508, 523, 726, 796, 821, 867
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 5 cut(s) 5, 109, 194, 392, 678
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 2 cut(s) 102, 594
Fsp4HI GCNGC 5 cut(s) 5, 109, 194, 392, 678
GlaI GCGC 4 cut(s) 35, 455, 664, 666
GluI GCNGC 5 cut(s) 5, 109, 194, 392, 678
HaeIII GGCC 3 cut(s) 59, 108, 750
HapII CCGG 4 cut(s) 105, 140, 203, 241
HhaI GCGC 4 cut(s) 36, 456, 665, 667
Hin1II CATG 7 cut(s) 73, 512, 527, 730, 800, 825, 871
Hin6I GCGC 4 cut(s) 34, 454, 663, 665
HinP1I GCGC 4 cut(s) 34, 454, 663, 665
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 5 cut(s) 43, 244, 398, 607, 716
HpaII CCGG 4 cut(s) 105, 140, 203, 241
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 174, 516, 723
Hpy188I TCNGA 4 cut(s) 65, 612, 691, 715
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 3 cut(s) 174, 516, 723
Hpy99I CGWCG 2 cut(s) 65, 152
HpyAV CCTTC 2 cut(s) 49, 353
HpyCH4III ACNGT 3 cut(s) 210, 520, 534
HpyCH4V TGCA 5 cut(s) 132, 250, 262, 545, 859
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 65, 80, 199, 228, 237, 268
HpyF3I CTNAG 4 cut(s) 294, 408, 609, 767
Hsp92II CATG 7 cut(s) 73, 512, 527, 730, 800, 825, 871
HspAI GCGC 4 cut(s) 34, 454, 663, 665
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 144, 616
LmnI GCTCC 2 cut(s) 65, 283
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 3 cut(s) 141, 169, 189
MaeIII GTNAC 3 cut(s) 304, 482, 825
MalI GATC 2 cut(s) 146, 618
MboI GATC 2 cut(s) 144, 616
MboII GAAGA 5 cut(s) 64, 338, 459, 571, 815
MhlI GDGCHC 2 cut(s) 102, 594
MluCI AATT 3 cut(s) 565, 733, 741
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 6 cut(s) 29, 137, 313, 325, 349, 778
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 4 cut(s) 105, 140, 203, 241
MspR9I CCNGG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 2 cut(s) 7, 665
MwoI GCNNNNNNNGC 7 cut(s) 31, 65, 80, 199, 228, 237, 268
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 144, 616
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 7 cut(s) 73, 512, 527, 730, 800, 825, 871
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 304, 482
PauI GCGCGC 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 861
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 4 cut(s) 43, 244, 398, 716
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 5 cut(s) 6, 110, 195, 393, 679
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 421
PstI CTGCAG 1 cut(s) 252
PteI GCGCGC 1 cut(s) 663
RsaI GTAC 3 cut(s) 347, 517, 820
RsaNI GTAC 3 cut(s) 346, 516, 819
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 8
SatI GCNGC 5 cut(s) 5, 109, 194, 392, 678
Sau3AI GATC 2 cut(s) 144, 616
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 1 cut(s) 425
SduI GDGCHC 2 cut(s) 102, 594
SfaNI GCATC 3 cut(s) 141, 169, 189
SfcI CTRYAG 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 3 cut(s) 20, 75, 353
SmoI CTYRAG 3 cut(s) 20, 75, 353
Sse9I AATT 3 cut(s) 565, 733, 741
SsiI CCGC 7 cut(s) 5, 7, 109, 302, 391, 678, 833
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 2 cut(s) 69, 457
TaaI ACNGT 3 cut(s) 210, 520, 534
TaqI TCGA 3 cut(s) 15, 218, 225
TasI AATT 3 cut(s) 565, 733, 741
TatI WGTACW 2 cut(s) 515, 818
TauI GCSGC 4 cut(s) 7, 111, 394, 680
TfiI GAWTC 4 cut(s) 43, 244, 398, 716
TscAI CASTG 5 cut(s) 159, 298, 456, 499, 537
TseFI GTSAC 2 cut(s) 304, 482
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 2 cut(s) 304, 482
TspDTI ATGAA 2 cut(s) 512, 816
TspGWI ACGGA 2 cut(s) 104, 545
TspRI CASTG 5 cut(s) 159, 298, 456, 499, 537
Van91I CCANNNNNTGG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.