Rmu_sc0005947.1_g000015

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005947.1
OG0000347
Physical Location & Seq
Forward (+)
75029 .. 77503
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005947.1_g000015.1.cds

Sequence Viewer

Length: 852 bp
atggaattgtctgaatcatacgctgaagggttggatttaccagagttagattatgaatatcgagccatcattgggataccttcagaggagtttagacatcttatcatacatctgcactactttgggaattctggtacttatcatctgcactatattcgttttcttgtttctgtacatgcgaccgatactgaagtcaagttttctgcagtaaatgaggaggttgtttacaagacagagcttggggaatgtattattgggggtgtccagcatgaacatccagtttccttgatcttcagtctccacttcctcagcgtcatcctgaacgcgtgtcttctgtcaaacattgtatggttgctccagtctgatgacttacctaccatgctgaattgccctgttggttcaataggcaacctcatccccattctgaagcttttggtgttgacatacaaaaggcttctcactctagttctgctgctattcaatccttgttccaagctgctcaagatgtcgaacctaggccaagctgtttctgcagggatccaaagtgtcattgatccaggtggagtcctagttccattaggaaagctattctgcagattttgtgtggatgttgtgcagctgccccattctgaagcttttggtgttgacatacaaaaggctttttgctctagttctgctgctattcattctcgtttccagttgctcaagatgtctaaccttggtcaagttgtttctgcagggatccagagcgtcattgatccaggtggagtcctagtgcagctaggaaagctattctgcagattatgtgattgttatgcagctggtttattgttcttgatgtgtgttgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

283

Amino Acids

31.09

Weight (kDa)

5.84

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 326
AclWI GGATC 6 cut(s) 532, 545, 548, 736, 749, 752
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 6 cut(s) 45, 66, 210, 277, 446, 651
AfaI GTAC 2 cut(s) 136, 174
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 402, 481
AjnI CCWGG 2 cut(s) 556, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AloI GAACNNNNNNTCC 2 cut(s) 555, 587
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 6 cut(s) 532, 545, 548, 736, 749, 752
AoxI GGCC 1 cut(s) 517
ApeKI GCWGC 7 cut(s) 472, 496, 616, 619, 677, 778, 818
ApoI RAATTY 1 cut(s) 127
AspA2I CCTAGG 1 cut(s) 514
AvrII CCTAGG 1 cut(s) 514
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BamHI GGATCC 2 cut(s) 537, 741
BbsI GAAGAC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 7 cut(s) 459, 483, 606, 628, 664, 790, 830
BccI CCATC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 2 cut(s) 558, 762
BciVI GTATCC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 6 cut(s) 464, 515, 569, 669, 773, 782
BfmI CTRYAG 5 cut(s) 204, 531, 592, 735, 796
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 7 cut(s) 473, 497, 617, 620, 678, 779, 819
BlnI CCTAGG 1 cut(s) 514
BlsI GCNGC 7 cut(s) 474, 498, 618, 621, 679, 780, 820
Bme1390I CCNGG 2 cut(s) 558, 762
BmiI GGNNCC 2 cut(s) 539, 743
BmrFI CCNGG 2 cut(s) 558, 762
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 2 cut(s) 485, 689
BsaJI CCNNGG 2 cut(s) 514, 718
BsaXI ACNNNNNCTCC 4 cut(s) 555, 585, 759, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 3 cut(s) 278, 358, 697
BseBI CCWGG 2 cut(s) 558, 762
BseDI CCNNGG 2 cut(s) 514, 718
BseGI GGATG 4 cut(s) 274, 315, 414, 613
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 3 cut(s) 278, 358, 697
BseRI GAGGAG 2 cut(s) 101, 230
BseXI GCAGC 7 cut(s) 459, 483, 606, 628, 664, 790, 830
BsgI GTGCAG 4 cut(s) 98, 131, 635, 797
Bsh1236I CGCG 1 cut(s) 326
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 5 cut(s) 288, 537, 553, 741, 757
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 1 cut(s) 321
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 2 cut(s) 539, 743
BspMAI CTGCAG 5 cut(s) 208, 535, 596, 739, 800
BspPI GGATC 6 cut(s) 532, 545, 548, 736, 749, 752
BsrGI TGTACA 1 cut(s) 172
BsrI ACTGG 3 cut(s) 278, 358, 697
BssECI CCNNGG 2 cut(s) 514, 718
BssMI GATC 5 cut(s) 288, 537, 553, 741, 757
BssT1I CCWWGG 2 cut(s) 514, 718
Bst2UI CCWGG 2 cut(s) 558, 762
BstAUI TGTACA 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 4 cut(s) 274, 315, 414, 613
BstFNI CGCG 1 cut(s) 326
BstKTI GATC 5 cut(s) 291, 540, 556, 744, 760
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 5 cut(s) 288, 537, 553, 741, 757
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 530, 787
BstNI CCWGG 2 cut(s) 558, 762
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 556, 760
BstSFI CTRYAG 5 cut(s) 204, 531, 592, 735, 796
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 7 cut(s) 459, 483, 606, 628, 664, 790, 830
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 537, 741
BstYI RGATCY 2 cut(s) 537, 741
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 519
BtsCI GGATG 4 cut(s) 274, 315, 414, 613
CseI GACGC 2 cut(s) 301, 739
Csp6I GTAC 2 cut(s) 135, 173
CviAII CATG 3 cut(s) 176, 269, 379
CviQI GTAC 2 cut(s) 135, 173
DdeI CTNAG 1 cut(s) 308
DpnI GATC 5 cut(s) 290, 539, 555, 743, 759
DpnII GATC 5 cut(s) 288, 537, 553, 741, 757
Eco130I CCWWGG 2 cut(s) 514, 718
Eco57I CTGAAG 6 cut(s) 45, 66, 210, 277, 446, 651
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 556, 760
EcoT14I CCWWGG 2 cut(s) 514, 718
ErhI CCWWGG 2 cut(s) 514, 718
FaeI CATG 3 cut(s) 179, 272, 382
FatI CATG 3 cut(s) 175, 268, 378
Fnu4HI GCNGC 7 cut(s) 473, 497, 617, 620, 678, 779, 819
FokI GGATG 4 cut(s) 261, 302, 401, 620
Fsp4HI GCNGC 7 cut(s) 473, 497, 617, 620, 678, 779, 819
FspBI CTAG 6 cut(s) 464, 515, 569, 669, 773, 782
GluI GCNGC 7 cut(s) 473, 497, 617, 620, 678, 779, 819
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 519
HgaI GACGC 2 cut(s) 301, 739
Hin1II CATG 3 cut(s) 179, 272, 382
HincII GTYRAC 2 cut(s) 441, 646
HindII GTYRAC 2 cut(s) 441, 646
HindIII AAGCTT 2 cut(s) 428, 633
HinfI GANTC 3 cut(s) 14, 564, 768
Hpy166II GTNNAC 3 cut(s) 226, 441, 646
Hpy188I TCNGA 5 cut(s) 13, 85, 364, 426, 631
Hpy188III TCNNGA 5 cut(s) 319, 502, 706, 745, 835
Hpy8I GTNNAC 3 cut(s) 226, 441, 646
HpyAV CCTTC 2 cut(s) 20, 90
HpyF10VI GCNNNNNNNGC 2 cut(s) 530, 787
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 3 cut(s) 179, 272, 382
Kzo9I GATC 5 cut(s) 288, 537, 553, 741, 757
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 7 cut(s) 459, 483, 606, 628, 664, 790, 830
MaeI CTAG 6 cut(s) 464, 515, 569, 669, 773, 782
MalI GATC 5 cut(s) 290, 539, 555, 743, 759
MboI GATC 5 cut(s) 288, 537, 553, 741, 757
MboII GAAGA 2 cut(s) 283, 323
MflI RGATCY 2 cut(s) 537, 741
MluCI AATT 3 cut(s) 5, 127, 385
MluI ACGCGT 1 cut(s) 324
MlyI GAGTC 2 cut(s) 573, 777
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 5 cut(s) 79, 208, 211, 317, 422
MspA1I CMGCKG 2 cut(s) 619, 821
MspR9I CCNGG 2 cut(s) 558, 762
MvaI CCWGG 2 cut(s) 558, 762
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 530, 787
NdeII GATC 5 cut(s) 288, 537, 553, 741, 757
NlaIII CATG 3 cut(s) 179, 272, 382
NlaIV GGNNCC 2 cut(s) 539, 743
NspI RCATGY 1 cut(s) 179
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 7 cut(s) 474, 498, 618, 621, 679, 780, 820
PleI GAGTC 2 cut(s) 572, 776
PpsI GAGTC 2 cut(s) 572, 776
Psp6I CCWGG 2 cut(s) 556, 760
PspGI CCWGG 2 cut(s) 556, 760
PspN4I GGNNCC 2 cut(s) 539, 743
PstI CTGCAG 5 cut(s) 208, 535, 596, 739, 800
PsuI RGATCY 2 cut(s) 537, 741
PvuII CAGCTG 2 cut(s) 619, 821
RsaI GTAC 2 cut(s) 136, 174
RsaNI GTAC 2 cut(s) 135, 173
SatI GCNGC 7 cut(s) 473, 497, 617, 620, 678, 779, 819
Sau3AI GATC 5 cut(s) 288, 537, 553, 741, 757
SchI GAGTC 2 cut(s) 573, 777
ScrFI CCNGG 2 cut(s) 558, 762
SfcI CTRYAG 5 cut(s) 204, 531, 592, 735, 796
SmlI CTYRAG 2 cut(s) 500, 704
SmoI CTYRAG 2 cut(s) 500, 704
Sse9I AATT 3 cut(s) 5, 127, 385
SspMI CTAG 6 cut(s) 464, 515, 569, 669, 773, 782
StyD4I CCNGG 2 cut(s) 556, 760
StyI CCWWGG 2 cut(s) 514, 718
TaqI TCGA 2 cut(s) 61, 509
TaqII GACCGA 1 cut(s) 197
TasI AATT 3 cut(s) 5, 127, 385
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 1 cut(s) 14
TseI GCWGC 7 cut(s) 472, 496, 616, 619, 677, 778, 818
TspDTI ATGAA 3 cut(s) 69, 285, 674
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 179
XmaJI CCTAGG 1 cut(s) 514
XspI CTAG 6 cut(s) 464, 515, 569, 669, 773, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.