Prupe.2G163100_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21354411 .. 21356635
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163100.1

Sequence Viewer

Length: 771 bp
ATGTTTCAATTTACCCTGGACCCATGTGCTCTTCTTCTAAGGCAGGCAGTGACACCCTTCATTGAGGCGGAAGCCTACAATGGCGAGATCTACGTCTCACCGACCGTCGTCACATTGATAGCAGAAGCCTCAGGTAGCGTCGTCTTAGTCCTGCGGATGAAACCTTGCACGTTCAACTCCTTTACCTGCACCAAGAACCTCTCCCTTGGCTTAGATCTCCGTATCTTGTACAGCAATCTCCTTCGAGCCAAGACTCATGCATTTCTCCGTCTCTCTGGCGATGAAACCAGTGGTCACATTGACTTTGGGCTCCTCGATACCAGAACTCTGCAAGGCTATCGAACTCACATTCCATTGCTTTCAAGGTCAAATGAGATGTTGCCTGTACCTCATCTCCAATATCAATTTCAAGTAAGAGTGGCGATACCTGCGGAGCAGTTTAGGGTTATTATCATGAAGCTATCCCAGTTCGAGGTGGCAGTTTCTGCAAGCGTAACAGATACTCAAGTTAGGTTCTTAAATGGAAATGGGAAGATTATCCCAAATCCTATTCTCAAGAAGCCGGAGCAGTGTATTATTGAGGGTGATGTTGGGGCAGCTCCAGTTTCCTTGGTGCTCAATCTCCGTCACGCTAGAGCAATCATGAATGCTTCAGTCATGTCAAACATGGTGTGGTTGCTTGGCCAGTCTAATGGTTCATCTGTCATGCTGGATTGCCCTTTTGGTAAACTTGGTAACCTCAATTATTACTTTCCGAAGCCTGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

257

Amino Acids

28.33

Weight (kDa)

8.6

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 194, 436
AciI CCGC 3 cut(s) 68, 154, 431
AcoI YGGCCR 1 cut(s) 682
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 2 cut(s) 230, 387
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 4 cut(s) 8, 175, 363, 410
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AloI GAACNNNNNNTCC 2 cut(s) 334, 366
AluBI AGCT 2 cut(s) 460, 599
AluI AGCT 2 cut(s) 460, 599
Alw21I GWGCWC 2 cut(s) 31, 618
Alw26I GTCTC 2 cut(s) 100, 275
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 90, 596
AvaII GGWCC 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BalI TGGCCA 1 cut(s) 684
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 31, 618
BbvI GCAGC 1 cut(s) 608
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 100, 275
BfaI CTAG 1 cut(s) 633
BfuAI ACCTGC 2 cut(s) 194, 436
BglII AGATCT 2 cut(s) 87, 214
BisI GCNGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 598
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 21, 311
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 460
BoxI GACNNNNGTC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 585
BpuEI CTTGAG 2 cut(s) 489, 539
BsaJI CCNNGG 3 cut(s) 15, 205, 609
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse1I ACTGG 4 cut(s) 288, 466, 602, 685
Bse21I CCTNAGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 3 cut(s) 15, 205, 609
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 4 cut(s) 288, 466, 602, 685
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 684
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 31, 618
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 2 cut(s) 100, 275
BsmBI CGTCTC 2 cut(s) 100, 275
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 1 cut(s) 684
Bsp1286I GDGCHC 3 cut(s) 31, 312, 618
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 2 cut(s) 87, 214
BspACI CCGC 3 cut(s) 68, 154, 431
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 1 cut(s) 143
BspHI TCATGA 2 cut(s) 453, 642
BspLI GGNNCC 2 cut(s) 21, 311
BspMI ACCTGC 2 cut(s) 194, 436
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 4 cut(s) 288, 466, 602, 685
BssECI CCNNGG 3 cut(s) 15, 205, 609
BssMI GATC 2 cut(s) 87, 214
BssT1I CCWWGG 2 cut(s) 205, 609
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 485
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 45, 490
BstDEI CTNAG 4 cut(s) 38, 130, 145, 211
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 90, 217
BstMAI GTCTC 2 cut(s) 100, 275
BstMBI GATC 2 cut(s) 87, 214
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 428, 485
BstNI CCWGG 1 cut(s) 17
BstPAI GACNNNNGTC 1 cut(s) 107
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 608
BstX2I RGATCY 2 cut(s) 87, 214
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 2 cut(s) 87, 214
Bsu36I CCTNAGG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 684
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 2 cut(s) 54, 575
BtsIMutI CAGTG 3 cut(s) 54, 295, 575
BveI ACCTGC 2 cut(s) 194, 436
Cac8I GCNNGC 2 cut(s) 45, 490
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 2 cut(s) 453, 642
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 229, 386
CviAII CATG 7 cut(s) 24, 257, 454, 643, 658, 667, 706
CviQI GTAC 2 cut(s) 229, 386
DdeI CTNAG 4 cut(s) 38, 130, 145, 211
DpnI GATC 2 cut(s) 89, 216
DpnII GATC 2 cut(s) 87, 214
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 205, 609
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 734
EcoO65I GGTNACC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 205, 609
EcoT22I ATGCAT 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 2 cut(s) 205, 609
Esp3I CGTCTC 2 cut(s) 100, 275
FaeI CATG 7 cut(s) 27, 260, 457, 646, 661, 670, 709
FaiI YATR 7 cut(s) 25, 258, 455, 644, 659, 668, 707
FatI CATG 7 cut(s) 23, 256, 453, 642, 657, 666, 705
Fnu4HI GCNGC 1 cut(s) 597
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 597
FspBI CTAG 1 cut(s) 633
GluI GCNGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 1 cut(s) 684
HapII CCGG 1 cut(s) 563
HgaI GACGC 1 cut(s) 127
Hin1II CATG 7 cut(s) 27, 260, 457, 646, 661, 670, 709
HinfI GANTC 1 cut(s) 253
HpaII CCGG 1 cut(s) 563
HphI GGTGA 2 cut(s) 90, 596
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 1 cut(s) 756
Hpy188III TCNNGA 3 cut(s) 454, 556, 643
Hpy8I GTNNAC 1 cut(s) 728
Hpy99I CGWCG 2 cut(s) 110, 143
HpyAV CCTTC 2 cut(s) 67, 251
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 93, 170
HpyCH4V TGCA 5 cut(s) 168, 189, 260, 331, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 485
HpyF3I CTNAG 4 cut(s) 38, 130, 145, 211
HpySE526I ACGT 2 cut(s) 93, 170
Hsp92II CATG 7 cut(s) 27, 260, 457, 646, 661, 670, 709
Kzo9I GATC 2 cut(s) 87, 214
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 4 cut(s) 315, 433, 565, 604
Lsp1109I GCAGC 1 cut(s) 608
MaeI CTAG 1 cut(s) 633
MaeII ACGT 2 cut(s) 93, 170
MaeIII GTNAC 6 cut(s) 49, 109, 293, 493, 626, 734
MalI GATC 2 cut(s) 89, 216
MboI GATC 2 cut(s) 87, 214
MboII GAAGA 3 cut(s) 23, 26, 544
MflI RGATCY 2 cut(s) 87, 214
MhlI GDGCHC 3 cut(s) 31, 312, 618
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 3 cut(s) 8, 404, 742
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 8 cut(s) 58, 139, 209, 323, 399, 466, 574, 749
Mox20I TGGCCA 1 cut(s) 684
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 1 cut(s) 684
MseI TTAA 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 684
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 428, 485
NdeII GATC 2 cut(s) 87, 214
NlaIII CATG 7 cut(s) 27, 260, 457, 646, 661, 670, 709
NlaIV GGNNCC 2 cut(s) 21, 311
NmuCI GTSAC 4 cut(s) 49, 109, 293, 626
NsiI ATGCAT 1 cut(s) 262
PagI TCATGA 2 cut(s) 453, 642
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 1 cut(s) 652
PkrI GCNGC 1 cut(s) 598
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 15
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 21, 311
PspPI GGNCC 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 87, 214
RsaI GTAC 2 cut(s) 230, 387
RsaNI GTAC 2 cut(s) 229, 386
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 1 cut(s) 597
Sau3AI GATC 2 cut(s) 87, 214
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 3 cut(s) 31, 312, 618
SinI GGWCC 1 cut(s) 19
SmlI CTYRAG 2 cut(s) 504, 554
SmoI CTYRAG 2 cut(s) 504, 554
Sse9I AATT 3 cut(s) 8, 404, 742
SsiI CCGC 3 cut(s) 68, 154, 431
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 2 cut(s) 205, 609
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 96, 173
TaqI TCGA 4 cut(s) 244, 315, 340, 471
TasI AATT 3 cut(s) 8, 404, 742
TatI WGTACW 1 cut(s) 228
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 3 cut(s) 54, 295, 575
TseFI GTSAC 4 cut(s) 49, 109, 293, 626
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 4 cut(s) 49, 109, 293, 626
TspDTI ATGAA 6 cut(s) 49, 173, 297, 470, 659, 687
TspGWI ACGGA 3 cut(s) 209, 257, 614
TspRI CASTG 3 cut(s) 54, 295, 575
VpaK11BI GGWCC 1 cut(s) 19
XspI CTAG 1 cut(s) 633
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.