Rroxscaffold_4G00301500

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000347
Physical Location & Seq
Reverse (-)
21850566 .. 21854840
4275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301500.1

Sequence Viewer

Length: 849 bp
ATGTCACGGTGGTTTGAGCTCAAGCTTGATTTTGCTGAAGCTATTCTGCTCAAGAAAGCTGTAAGAGTCTTCACTCAGGTAGCCTATTCAGACCGAGAGCTCCCCACTTCCATGTTCAACAATGTCATCCCCAACAACGCCGACCTCCTCTTATCTCCGACCATGGTCCTACTGGTCTCTACAAACTCGCATTTTCGGCTTCCGGAAATGGCCACTGTGCTGGCGATGAAGCCGCCGTGCTCCTCCGTGTCGAGATTGTGGTGCTCCAAGAGCTGCCGCACGCTCTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAACATAGAGACTGGGGATTGGGTTACTCTTTATGGTGATGAGGGAGCTGTTGATAGGATTTTCTATGAGATTGGGGATGATGAGGGCATCAAATACTCCTCCACACTGCCAGTGGTTTCATTGCAGGATCAGATTCAGATGGACCTAGGGTTCGTAGGATCTGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTCGTGCCTTTATCACTCAATCAGATTCTCATGGGTTTAAAGTTCATGCCAGAGTGTCACAAACCCAAGTTGTGCTCCGGGTAGTGAATAACGAGATGGTCTTCAGACCAGAGCCTGGGGTTTGCGAGATTGAGAGTGATGGAGGTAGATATCCGTTTGTGTTGAAGTTTGATCTCCAGCACAAGAGAGCGTTTCTCAATGCTGCTATGCTGTCAGAGATGGTATGGATACTTATGTCTGCGGAGTTGATCACTGTGCTGAGCTTCCCTATTGTTGGCCTGGGTAACCTCATGTTTACCCAACTGAACCCTGTGGCGCCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

282

Amino Acids

31.79

Weight (kDa)

5.78

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 838
AccB7I CCANNNNNTGG 1 cut(s) 638
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 233, 277, 764
AclWI GGATC 2 cut(s) 459, 490
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 3 cut(s) 57, 498, 610
AcyI GRCGYC 1 cut(s) 839
AfiI CCNNNNNNNGG 2 cut(s) 638, 797
AgsI TTSAA 3 cut(s) 118, 307, 688
AjnI CCWGG 2 cut(s) 637, 801
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 8 cut(s) 19, 25, 41, 59, 100, 273, 371, 786
AluI AGCT 8 cut(s) 19, 25, 41, 59, 100, 273, 371, 786
Alw21I GWGCWC 5 cut(s) 21, 102, 242, 266, 600
Alw26I GTCTC 2 cut(s) 181, 326
AlwI GGATC 2 cut(s) 459, 490
AlwNI CAGNNNCTG 1 cut(s) 638
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 2 cut(s) 210, 799
ApeKI GCWGC 2 cut(s) 273, 725
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 469
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 2 cut(s) 166, 466
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 2 cut(s) 166, 466
AvrII CCTAGG 1 cut(s) 469
BaeI ACNNNNGTAYC 2 cut(s) 743, 776
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 2 cut(s) 21, 102
BbsI GAAGAC 3 cut(s) 61, 504, 616
Bbv12I GWGCWC 5 cut(s) 21, 102, 242, 266, 600
BbvI GCAGC 2 cut(s) 260, 712
BccI CCATC 4 cut(s) 457, 613, 656, 736
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 2 cut(s) 639, 803
BciVI GTATCC 1 cut(s) 744
BclI TGATCA 1 cut(s) 771
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 2 cut(s) 181, 326
BfaI CTAG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 842
BfuI GTATCC 1 cut(s) 744
BisI GCNGC 4 cut(s) 233, 274, 277, 726
BlnI CCTAGG 1 cut(s) 469
BlpI GCTNAGC 1 cut(s) 782
BlsI GCNGC 4 cut(s) 234, 275, 278, 727
Bme1390I CCNGG 3 cut(s) 602, 639, 803
Bme18I GGWCC 2 cut(s) 166, 466
BmgT120I GGNCC 2 cut(s) 166, 466
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 3 cut(s) 602, 639, 803
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 345
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 3 cut(s) 61, 504, 616
BplI GAGNNNNNCTC 2 cut(s) 702, 734
BpmI CTGGAG 1 cut(s) 683
Bpu1102I GCTNAGC 1 cut(s) 782
BpuEI CTTGAG 2 cut(s) 5, 35
BpuMI CCSGG 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 839
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 162, 469, 638, 802
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 797
Bse1I ACTGG 4 cut(s) 177, 321, 340, 434
Bse3DI GCAATG 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 639, 803
BseDI CCNNGG 4 cut(s) 162, 469, 638, 802
BseGI GGATG 2 cut(s) 126, 406
BseLI CCNNNNNNNGG 2 cut(s) 638, 797
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 2 cut(s) 89, 773
BseNI ACTGG 4 cut(s) 177, 321, 340, 434
BseRI GAGGAG 3 cut(s) 137, 232, 412
BseXI GCAGC 2 cut(s) 260, 712
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 2 cut(s) 212, 801
BshNI GGYRCC 1 cut(s) 838
BsiHKAI GWGCWC 5 cut(s) 21, 102, 242, 266, 600
BsiSI CCGG 2 cut(s) 203, 601
BslI CCNNNNNNNGG 2 cut(s) 638, 797
BsmAI GTCTC 2 cut(s) 181, 326
BsnI GGCC 2 cut(s) 212, 801
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 5 cut(s) 21, 102, 242, 266, 600
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 4 cut(s) 451, 482, 694, 771
Bsp1720I GCTNAGC 1 cut(s) 782
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 3 cut(s) 233, 277, 764
BspANI GGCC 2 cut(s) 212, 801
BspCNI CTCAG 2 cut(s) 88, 774
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 840
BspPI GGATC 2 cut(s) 459, 490
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 443
BsrI ACTGG 4 cut(s) 177, 321, 340, 434
BssECI CCNNGG 4 cut(s) 162, 469, 638, 802
BssMI GATC 4 cut(s) 451, 482, 694, 771
BssNI GRCGYC 1 cut(s) 839
BssT1I CCWWGG 2 cut(s) 162, 469
Bst2UI CCWGG 2 cut(s) 639, 803
Bst4CI ACNGT 3 cut(s) 9, 217, 778
BstACI GRCGYC 1 cut(s) 839
BstC8I GCNNGC 2 cut(s) 222, 281
BstDEI CTNAG 2 cut(s) 75, 782
BstDSI CCRYGG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 2 cut(s) 126, 406
BstH2I RGCGCY 1 cut(s) 842
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 4 cut(s) 454, 485, 697, 774
BstMAI GTCTC 2 cut(s) 181, 326
BstMBI GATC 4 cut(s) 451, 482, 694, 771
BstMWI GCNNNNNNNGC 2 cut(s) 196, 270
BstNI CCWGG 2 cut(s) 639, 803
BstPAI GACNNNNGTC 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 3 cut(s) 600, 637, 801
BstV1I GCAGC 2 cut(s) 260, 712
BstV2I GAAGAC 3 cut(s) 61, 504, 616
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 482
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 2 cut(s) 212, 801
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 126, 406
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 4 cut(s) 213, 428, 441, 774
Cac8I GCNNGC 2 cut(s) 222, 281
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 2 cut(s) 166, 466
CviAII CATG 5 cut(s) 112, 163, 554, 569, 814
DdeI CTNAG 2 cut(s) 75, 782
DinI GGCGCC 1 cut(s) 840
DpnI GATC 4 cut(s) 453, 484, 696, 773
DpnII GATC 4 cut(s) 451, 482, 694, 771
DraI TTTAAA 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 210
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco130I CCWWGG 2 cut(s) 162, 469
Eco24I GRGCYC 2 cut(s) 21, 102
Eco31I GGTCTC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 674
Eco47I GGWCC 2 cut(s) 166, 466
Eco53kI GAGCTC 2 cut(s) 19, 100
Eco57I CTGAAG 3 cut(s) 57, 498, 610
Eco91I GGTNACC 1 cut(s) 806
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoO65I GGTNACC 1 cut(s) 806
EcoRII CCWGG 2 cut(s) 637, 801
EcoRV GATATC 1 cut(s) 674
EcoT14I CCWWGG 2 cut(s) 162, 469
EcoT38I GRGCYC 2 cut(s) 21, 102
EgeI GGCGCC 1 cut(s) 840
EheI GGCGCC 1 cut(s) 840
ErhI CCWWGG 2 cut(s) 162, 469
FaeI CATG 5 cut(s) 115, 166, 557, 572, 817
FatI CATG 5 cut(s) 111, 162, 553, 568, 813
FbaI TGATCA 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 233, 274, 277, 726
FokI GGATG 2 cut(s) 113, 413
FriOI GRGCYC 2 cut(s) 21, 102
Fsp4HI GCNGC 4 cut(s) 233, 274, 277, 726
FspBI CTAG 1 cut(s) 470
GlaI GCGC 1 cut(s) 840
GluI GCNGC 4 cut(s) 233, 274, 277, 726
GsuI CTGGAG 1 cut(s) 683
HaeII RGCGCY 1 cut(s) 842
HaeIII GGCC 2 cut(s) 212, 801
HapII CCGG 2 cut(s) 203, 601
HhaI GCGC 1 cut(s) 841
Hin1I GRCGYC 1 cut(s) 839
Hin1II CATG 5 cut(s) 115, 166, 557, 572, 817
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 3 cut(s) 66, 457, 548
HpaII CCGG 2 cut(s) 203, 601
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 819
Hpy188I TCNGA 9 cut(s) 91, 159, 456, 462, 487, 517, 547, 629, 739
Hpy188III TCNNGA 3 cut(s) 52, 203, 252
Hpy8I GTNNAC 1 cut(s) 819
HpyCH4III ACNGT 3 cut(s) 9, 217, 778
HpyCH4V TGCA 2 cut(s) 298, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 270
HpyF3I CTNAG 2 cut(s) 75, 782
Hsp92I GRCGYC 1 cut(s) 839
Hsp92II CATG 5 cut(s) 115, 166, 557, 572, 817
HspAI GCGC 1 cut(s) 839
KasI GGCGCC 1 cut(s) 838
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 771
Kzo9I GATC 4 cut(s) 451, 482, 694, 771
LmnI GCTCC 5 cut(s) 105, 245, 269, 368, 603
Lsp1109I GCAGC 2 cut(s) 260, 712
LweI GCATC 1 cut(s) 420
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 4 cut(s) 3, 346, 579, 806
MalI GATC 4 cut(s) 453, 484, 696, 773
MboI GATC 4 cut(s) 451, 482, 694, 771
MboII GAAGA 3 cut(s) 61, 504, 616
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 5 cut(s) 21, 102, 242, 266, 600
MlsI TGGCCA 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 212
Mly113I GGCGCC 1 cut(s) 839
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 9 cut(s) 155, 158, 253, 358, 400, 433, 492, 659, 821
Mox20I TGGCCA 1 cut(s) 212
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 2 cut(s) 203, 601
MspR9I CCNGG 3 cut(s) 602, 639, 803
MvaI CCWGG 2 cut(s) 639, 803
MwoI GCNNNNNNNGC 2 cut(s) 196, 270
NarI GGCGCC 1 cut(s) 839
NciI CCSGG 1 cut(s) 602
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 451, 482, 694, 771
NlaIII CATG 5 cut(s) 115, 166, 557, 572, 817
NlaIV GGNNCC 1 cut(s) 840
NmuCI GTSAC 2 cut(s) 3, 579
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 457, 548
PflMI CCANNNNNTGG 1 cut(s) 638
PkrI GCNGC 4 cut(s) 234, 275, 278, 727
PleI GAGTC 1 cut(s) 74
PluTI GGCGCC 1 cut(s) 842
PpsI GAGTC 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 21, 102
Psp6I CCWGG 2 cut(s) 637, 801
PspEI GGTNACC 1 cut(s) 806
PspGI CCWGG 2 cut(s) 637, 801
PspN4I GGNNCC 1 cut(s) 840
PspPI GGNCC 2 cut(s) 166, 466
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 2 cut(s) 21, 102
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 4 cut(s) 233, 274, 277, 726
Sau3AI GATC 4 cut(s) 451, 482, 694, 771
Sau96I GGNCC 2 cut(s) 166, 466
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 3 cut(s) 602, 639, 803
SduI GDGCHC 5 cut(s) 21, 102, 242, 266, 600
SfaNI GCATC 1 cut(s) 420
SfoI GGCGCC 1 cut(s) 840
SinI GGWCC 2 cut(s) 166, 466
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 20, 50
SmoI CTYRAG 2 cut(s) 20, 50
SsiI CCGC 3 cut(s) 233, 277, 764
SspDI GGCGCC 1 cut(s) 838
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 3 cut(s) 600, 637, 801
StyI CCWWGG 2 cut(s) 162, 469
TaaI ACNGT 3 cut(s) 9, 217, 778
TaqI TCGA 1 cut(s) 251
TaqII GACCGA 1 cut(s) 108
TauI GCSGC 2 cut(s) 235, 279
TfiI GAWTC 2 cut(s) 457, 548
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 4 cut(s) 220, 435, 441, 781
TseFI GTSAC 2 cut(s) 3, 579
TseI GCWGC 2 cut(s) 273, 725
Tsp45I GTSAC 2 cut(s) 3, 579
TspDTI ATGAA 3 cut(s) 242, 432, 557
TspGWI ACGGA 2 cut(s) 235, 666
TspRI CASTG 4 cut(s) 220, 435, 441, 781
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 166, 466
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 433
XmaJI CCTAGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.