Rmu_sc0007658.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007658.1
OG0000347
Physical Location & Seq
Reverse (-)
57591 .. 58376
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007658.1_g000012.1.cds

Sequence Viewer

Length: 528 bp
atgccgcggtggttcgacctcaagcttgatcggcgcaaagcgattctgatgaagaaggccgtcggagccatggctcaagtagcctttaccgacagagagctcgccggccgcccccaaaacgccgacctctgcgtcactccggagatcgtcgcgctggtttccaaaaccaagtctactgatgccgtcagcgcgctgatgatgccggaactcttgatgtcgagcttcgagtgctacgaaagccggaatctgcagttcaatctgcacagcttgctttgcctattggagcagaacactgagtttgcggtcagtctttatggtgaggtagaagatgaggatgtgatttggtttgagcttgaggaaggttttcgaacgatttacacttctactatgcggctggtttcatggactaaggatgagatggacctgggtttcttggtatataagtatccagtgcgccttggcttgtcttcaaagagcttttgtgaccttatcactgatatgggttctcatgggtgtacaggtacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.86

Weight (kDa)

4.89

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 173
AccII CGCG 3 cut(s) 7, 152, 191
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 5 cut(s) 5, 7, 109, 302, 391
AcoI YGGCCR 1 cut(s) 106
AfaI GTAC 2 cut(s) 517, 523
AgsI TTSAA 2 cut(s) 256, 471
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 6 cut(s) 25, 100, 222, 267, 352, 477
AluI AGCT 6 cut(s) 25, 100, 222, 267, 352, 477
Alw21I GWGCWC 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 57, 106
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 5 cut(s) 36, 154, 191, 193, 456
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 329
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 1 cut(s) 412
BceAI ACGGC 2 cut(s) 44, 167
BciT130I CCWGG 1 cut(s) 425
BciVI GTATCC 1 cut(s) 456
BfmI CTRYAG 1 cut(s) 248
BfuI GTATCC 1 cut(s) 456
BisI GCNGC 3 cut(s) 5, 109, 392
BlsI GCNGC 3 cut(s) 6, 110, 393
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 2 cut(s) 169, 189
BpiI GAAGAC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 3 cut(s) 5, 60, 374
BsaJI CCNNGG 4 cut(s) 5, 69, 424, 457
BsaWI WCCGGW 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 449
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 4 cut(s) 5, 69, 424, 457
BseGI GGATG 2 cut(s) 340, 418
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 449
BsePI GCGCGC 1 cut(s) 189
BseX3I CGGCCG 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 3 cut(s) 7, 152, 191
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 59, 108
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 4 cut(s) 105, 140, 203, 241
BsnI GGCC 2 cut(s) 59, 108
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 515
Bsp143I GATC 2 cut(s) 28, 144
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 5 cut(s) 5, 7, 109, 302, 391
BspANI GGCC 2 cut(s) 59, 108
BspCNI CTCAG 1 cut(s) 286
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 3 cut(s) 7, 152, 191
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 515
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 5, 69, 424, 457
BssHII GCGCGC 1 cut(s) 189
BssMI GATC 2 cut(s) 28, 144
BssT1I CCWWGG 2 cut(s) 69, 457
Bst2UI CCWGG 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 4 cut(s) 102, 106, 191, 269
BstDEI CTNAG 2 cut(s) 294, 408
BstDSI CCRYGG 2 cut(s) 5, 69
BstF5I GGATG 2 cut(s) 340, 418
BstFNI CGCG 3 cut(s) 7, 152, 191
BstHHI GCGC 5 cut(s) 36, 154, 191, 193, 456
BstKTI GATC 2 cut(s) 31, 147
BstMBI GATC 2 cut(s) 28, 144
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 3 cut(s) 7, 152, 191
BstV2I GAAGAC 1 cut(s) 459
BstZI CGGCCG 1 cut(s) 106
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 2 cut(s) 59, 108
BtgI CCRYGG 2 cut(s) 5, 69
BtsCI GGATG 2 cut(s) 340, 418
BtsIMutI CAGTG 3 cut(s) 291, 456, 492
Cac8I GCNNGC 4 cut(s) 102, 106, 191, 269
CfoI GCGC 5 cut(s) 36, 154, 191, 193, 456
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 421
Cfr42I CCGCGG 1 cut(s) 8
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 516, 522
CviAII CATG 3 cut(s) 70, 402, 509
CviQI GTAC 2 cut(s) 516, 522
DdeI CTNAG 2 cut(s) 294, 408
DpnI GATC 2 cut(s) 30, 146
DpnII GATC 2 cut(s) 28, 144
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 69, 457
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 2 cut(s) 69, 457
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 69, 457
FaeI CATG 3 cut(s) 73, 405, 512
FaiI YATR 8 cut(s) 71, 315, 389, 403, 439, 441, 500, 510
FatI CATG 3 cut(s) 69, 401, 508
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 5, 109, 392
FokI GGATG 2 cut(s) 347, 425
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 5, 109, 392
GlaI GCGC 5 cut(s) 35, 153, 190, 192, 455
GluI GCNGC 3 cut(s) 5, 109, 392
HaeIII GGCC 2 cut(s) 59, 108
HapII CCGG 4 cut(s) 105, 140, 203, 241
HgaI GACGC 1 cut(s) 121
HhaI GCGC 5 cut(s) 36, 154, 191, 193, 456
Hin1II CATG 3 cut(s) 73, 405, 512
Hin6I GCGC 5 cut(s) 34, 152, 189, 191, 454
HinP1I GCGC 5 cut(s) 34, 152, 189, 191, 454
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 43, 244
HpaII CCGG 4 cut(s) 105, 140, 203, 241
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 174, 516
Hpy188I TCNGA 2 cut(s) 48, 65
Hpy188III TCNNGA 2 cut(s) 140, 211
Hpy8I GTNNAC 2 cut(s) 174, 516
Hpy99I CGWCG 2 cut(s) 65, 152
HpyAV CCTTC 2 cut(s) 49, 353
HpyCH4V TGCA 2 cut(s) 250, 262
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
HpyF3I CTNAG 2 cut(s) 294, 408
Hsp92II CATG 3 cut(s) 73, 405, 512
HspAI GCGC 5 cut(s) 34, 152, 189, 191, 454
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 28, 144
LmnI GCTCC 2 cut(s) 65, 283
LweI GCATC 2 cut(s) 169, 189
MaeIII GTNAC 2 cut(s) 133, 482
MalI GATC 2 cut(s) 30, 146
MboI GATC 2 cut(s) 28, 144
MboII GAAGA 3 cut(s) 64, 338, 459
MhlI GDGCHC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 29, 137, 313, 325, 349
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 1 cut(s) 526
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 4 cut(s) 105, 140, 203, 241
MspR9I CCNGG 1 cut(s) 425
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 3 cut(s) 7, 152, 191
MwoI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 28, 144
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 3 cut(s) 73, 405, 512
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 133, 482
NspV TTCGAA 1 cut(s) 367
PauI GCGCGC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 43, 244
PkrI GCNGC 3 cut(s) 6, 110, 393
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 421
PstI CTGCAG 1 cut(s) 252
PteI GCGCGC 1 cut(s) 189
RsaI GTAC 2 cut(s) 517, 523
RsaNI GTAC 2 cut(s) 516, 522
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 8
SaqAI TTAA 1 cut(s) 526
SatI GCNGC 3 cut(s) 5, 109, 392
Sau3AI GATC 2 cut(s) 28, 144
Sau96I GGNCC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 425
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 169, 189
SfcI CTRYAG 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 8
SfuI TTCGAA 1 cut(s) 367
SgrBI CCGCGG 1 cut(s) 8
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 3 cut(s) 20, 75, 353
SmoI CTYRAG 3 cut(s) 20, 75, 353
SsiI CCGC 5 cut(s) 5, 7, 109, 302, 391
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 2 cut(s) 69, 457
TaqI TCGA 4 cut(s) 15, 218, 225, 367
TatI WGTACW 1 cut(s) 515
TauI GCSGC 3 cut(s) 7, 111, 394
TfiI GAWTC 2 cut(s) 43, 244
Tru1I TTAA 1 cut(s) 526
Tru9I TTAA 1 cut(s) 526
TscAI CASTG 3 cut(s) 298, 456, 499
TseFI GTSAC 2 cut(s) 133, 482
Tsp45I GTSAC 2 cut(s) 133, 482
TspDTI ATGAA 2 cut(s) 65, 390
TspRI CASTG 3 cut(s) 298, 456, 499
VpaK11BI GGWCC 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.