Rh1DG248500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000347
Physical Location & Seq
Forward (+)
46268186 .. 46271525
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG248500.1

Sequence Viewer

Length: 681 bp
ATGTCACGGTGGTTTGAGCTCAAGCTTGATTTTCCTGAAGCTATTCTGCTCAAGAAAGCTGTAAGAGTCTTCACTCAGGTAGCCTATTCAGACCGAGAGCTCCCCACTTCCATGTTCAACAATGTCATCCCCAACAACGCCGACCTCCACTTATCTCCGACCATGGTCCTACTGGTCTCTACAAACTCGCATTTTCGGTTTCCGGAAATGACCACTGTGCTGGCGATGAAGCCGCCCTGCTCCTCCGTGTCGAGATTGTGGTGCTCCAAGAGCTGCCGCACGCTGTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAACACTGAGGATTCGGTTACTCTTTATGGTGATGAGGCAGCTGTTGATAGGATTTTCTATGAGATTGGGGATGTTCATGCCAGAGTGTCACAAACCCAAGTTGTGCTCCGGGTGGTGAATAACGAGATGGTCTTCAGACCAGAGCCCGGGGTTTGCGAGATTGAGAGTGATGGAGGTAGATATCCATTTGTGTTGAAGTTTGATCTCCAGCACAAGAGAGCGTTTCTCAATGCTGCTATGCTGTCAGAGATGGTATGGATACTTAACTCTGCGGAGTTGATCACCGTGCTGAGCTTCCCTATTGTTGGCCTGGGTAACCTCATGTTTACCCAACTGAACCCTGTGGCGCCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.63

Weight (kDa)

6.52

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 233, 277, 596
AcuI CTGAAG 2 cut(s) 57, 442
AcyI GRCGYC 1 cut(s) 671
AdeI CACNNNGTG 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 470, 629
AgsI TTSAA 3 cut(s) 118, 307, 520
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 8 cut(s) 19, 25, 41, 59, 100, 273, 365, 618
AluI AGCT 8 cut(s) 19, 25, 41, 59, 100, 273, 365, 618
Alw21I GWGCWC 4 cut(s) 21, 102, 266, 432
Alw26I GTCTC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 3 cut(s) 273, 362, 557
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 673
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 3 cut(s) 434, 471, 472
AsuHPI GGTGA 3 cut(s) 365, 451, 598
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 670
BanII GRGCYC 3 cut(s) 21, 102, 471
BbsI GAAGAC 2 cut(s) 61, 448
Bbv12I GWGCWC 4 cut(s) 21, 102, 266, 432
BbvI GCAGC 3 cut(s) 260, 374, 544
BccI CCATC 3 cut(s) 445, 488, 568
BciT130I CCWGG 1 cut(s) 635
BciVI GTATCC 1 cut(s) 576
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 3 cut(s) 434, 471, 472
BcoDI GTCTC 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 674
BfuI GTATCC 1 cut(s) 576
BisI GCNGC 5 cut(s) 233, 274, 277, 363, 558
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 5 cut(s) 234, 275, 278, 364, 559
Bme1390I CCNGG 4 cut(s) 434, 471, 472, 635
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 4 cut(s) 434, 471, 472, 635
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 61, 448
BplI GAGNNNNNCTC 2 cut(s) 534, 566
BpmI CTGGAG 1 cut(s) 515
Bpu1102I GCTNAGC 1 cut(s) 614
BpuEI CTTGAG 2 cut(s) 5, 35
BpuMI CCSGG 3 cut(s) 434, 471, 472
BsaHI GRCGYC 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 162, 470, 471, 634
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 629
Bse1I ACTGG 2 cut(s) 177, 321
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 1 cut(s) 635
BseDI CCNNGG 4 cut(s) 162, 470, 471, 634
BseGI GGATG 2 cut(s) 126, 400
BseLI CCNNNNNNNGG 2 cut(s) 470, 629
BseMII CTCAG 3 cut(s) 89, 321, 605
BseNI ACTGG 2 cut(s) 177, 321
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 3 cut(s) 260, 374, 544
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 1 cut(s) 633
BshNI GGYRCC 1 cut(s) 670
BsiHKAI GWGCWC 4 cut(s) 21, 102, 266, 432
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 3 cut(s) 203, 433, 471
BslI CCNNNNNNNGG 2 cut(s) 470, 629
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 633
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 5 cut(s) 21, 102, 266, 432, 471
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 526, 603
Bsp1720I GCTNAGC 1 cut(s) 614
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 3 cut(s) 233, 277, 596
BspANI GGCC 1 cut(s) 633
BspCNI CTCAG 3 cut(s) 88, 322, 606
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 670
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 177, 321
BssECI CCNNGG 4 cut(s) 162, 470, 471, 634
BssMI GATC 2 cut(s) 526, 603
BssNI GRCGYC 1 cut(s) 671
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 3 cut(s) 9, 217, 610
BstACI GRCGYC 1 cut(s) 671
BstC8I GCNNGC 2 cut(s) 222, 281
BstDEI CTNAG 3 cut(s) 75, 330, 614
BstDSI CCRYGG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 2 cut(s) 126, 400
BstH2I RGCGCY 1 cut(s) 674
BstHHI GCGC 1 cut(s) 673
BstKTI GATC 2 cut(s) 529, 606
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 2 cut(s) 526, 603
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 635
BstPAI GACNNNNGTC 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 4 cut(s) 432, 469, 470, 633
BstV1I GCAGC 3 cut(s) 260, 374, 544
BstV2I GAAGAC 2 cut(s) 61, 448
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuI GTATCC 1 cut(s) 576
BsuRI GGCC 1 cut(s) 633
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 126, 400
BtsIMutI CAGTG 2 cut(s) 213, 327
Cac8I GCNNGC 2 cut(s) 222, 281
CfoI GCGC 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 166
Cfr9I CCCGGG 1 cut(s) 470
CviAII CATG 4 cut(s) 112, 163, 401, 646
DdeI CTNAG 3 cut(s) 75, 330, 614
DinI GGCGCC 1 cut(s) 672
DpnI GATC 2 cut(s) 528, 605
DpnII GATC 2 cut(s) 526, 603
DraIII CACNNNGTG 1 cut(s) 285
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 3 cut(s) 21, 102, 471
Eco31I GGTCTC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 2 cut(s) 19, 100
Eco57I CTGAAG 2 cut(s) 57, 442
Eco88I CYCGRG 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 638
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoO65I GGTNACC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 633
EcoRV GATATC 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 3 cut(s) 21, 102, 471
EgeI GGCGCC 1 cut(s) 672
EheI GGCGCC 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 115, 166, 404, 649
FaiI YATR 8 cut(s) 113, 164, 351, 384, 402, 563, 580, 647
FatI CATG 4 cut(s) 111, 162, 400, 645
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 5 cut(s) 233, 274, 277, 363, 558
FokI GGATG 2 cut(s) 113, 407
FriOI GRGCYC 3 cut(s) 21, 102, 471
Fsp4HI GCNGC 5 cut(s) 233, 274, 277, 363, 558
GlaI GCGC 1 cut(s) 672
GluI GCNGC 5 cut(s) 233, 274, 277, 363, 558
GsuI CTGGAG 1 cut(s) 515
HaeII RGCGCY 1 cut(s) 674
HaeIII GGCC 1 cut(s) 633
HapII CCGG 3 cut(s) 203, 433, 471
HhaI GCGC 1 cut(s) 673
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 4 cut(s) 115, 166, 404, 649
Hin6I GCGC 1 cut(s) 671
HinP1I GCGC 1 cut(s) 671
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 66, 335
HpaII CCGG 3 cut(s) 203, 433, 471
HphI GGTGA 3 cut(s) 365, 451, 598
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 4 cut(s) 91, 159, 461, 571
Hpy188III TCNNGA 4 cut(s) 35, 52, 203, 252
Hpy8I GTNNAC 1 cut(s) 651
HpyCH4III ACNGT 3 cut(s) 9, 217, 610
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 3 cut(s) 75, 330, 614
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 4 cut(s) 115, 166, 404, 649
HspAI GCGC 1 cut(s) 671
KasI GGCGCC 1 cut(s) 670
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 2 cut(s) 526, 603
LmnI GCTCC 4 cut(s) 105, 245, 269, 435
Lsp1109I GCAGC 3 cut(s) 260, 374, 544
MaeIII GTNAC 4 cut(s) 3, 340, 411, 638
MalI GATC 2 cut(s) 528, 605
MboI GATC 2 cut(s) 526, 603
MboII GAAGA 2 cut(s) 61, 448
MhlI GDGCHC 5 cut(s) 21, 102, 266, 432, 471
MluCI AATT 1 cut(s) 676
Mly113I GGCGCC 1 cut(s) 671
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 6 cut(s) 155, 253, 325, 352, 491, 653
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 3 cut(s) 203, 433, 471
MspR9I CCNGG 4 cut(s) 434, 471, 472, 635
MvaI CCWGG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 270
NarI GGCGCC 1 cut(s) 671
NciI CCSGG 3 cut(s) 434, 471, 472
NcoI CCATGG 1 cut(s) 162
NdeII GATC 2 cut(s) 526, 603
NlaIII CATG 4 cut(s) 115, 166, 404, 649
NlaIV GGNNCC 1 cut(s) 672
NmuCI GTSAC 2 cut(s) 3, 411
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 5 cut(s) 234, 275, 278, 364, 559
PleI GAGTC 1 cut(s) 74
PluTI GGCGCC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 21, 102
Psp6I CCWGG 1 cut(s) 633
PspEI GGTNACC 1 cut(s) 638
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 2 cut(s) 21, 102
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 5 cut(s) 233, 274, 277, 363, 558
Sau3AI GATC 2 cut(s) 526, 603
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 4 cut(s) 434, 471, 472, 635
SduI GDGCHC 5 cut(s) 21, 102, 266, 432, 471
SfoI GGCGCC 1 cut(s) 672
SinI GGWCC 1 cut(s) 166
SmaI CCCGGG 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 20, 50
SmoI CTYRAG 2 cut(s) 20, 50
Sse9I AATT 1 cut(s) 676
SsiI CCGC 3 cut(s) 233, 277, 596
SspDI GGCGCC 1 cut(s) 670
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 4 cut(s) 432, 469, 470, 633
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 9, 217, 610
TaqI TCGA 1 cut(s) 251
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 676
TauI GCSGC 2 cut(s) 235, 279
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 2 cut(s) 220, 334
TseFI GTSAC 2 cut(s) 3, 411
TseI GCWGC 3 cut(s) 273, 362, 557
Tsp45I GTSAC 2 cut(s) 3, 411
TspDTI ATGAA 2 cut(s) 242, 389
TspGWI ACGGA 1 cut(s) 235
TspMI CCCGGG 1 cut(s) 470
TspRI CASTG 2 cut(s) 220, 334
VpaK11BI GGWCC 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmaI CCCGGG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.