Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000347

Physical Location & Seq

Genomic Coordinates Reverse (-)

34114687 .. 34123212

Gene Structure 8526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCAAGTAATCTCCATGGATCACTGCCTGAATCTTTGGGACCCCTTAAATATTTGGAGAGTCTTGGGTTCGGAAAGAACTCATTCTCGGGTCCTCTCCCAGCCACAACAGGAAATCTGTCACATTTGCAGGTCCTGGACCTGGCCTTCAACAACATGATGAATGGCACCATCCCAGAAAGTATCGGACAACTTTCAGAGTTGAGAGCATCGTTATTCTGGGAGTCTGGGGTGGTGCATGGGAAGGCTGAGAGATACCGGATTCTGCGTGAGAGGGGTCAATATCCATTTTTGTTGGAATTTGGTCTCCATCATAAGAGTGCATTCCTGAATGCGGCGAGTTTGTCAGACAGAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTGGAGGTACCTGTTAATGGACTTGGTAGCATCCTGTTTTGTTCTAGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

147

Amino Acids

16.22

Weight (kDa)

7.98

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica	Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis	pycom07g13980
rosa_chinensis	RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata	RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora	Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa	Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha	Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana	Rw1G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
Acc65I	GGTACC	1 cut(s)	397
AccB1I	GGYRCC	2 cut(s)	167, 397
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	4 cut(s)	142, 334, 373, 407
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	135, 141
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	83
Asp718I	GGTACC	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	41, 92, 133, 139
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	4 cut(s)	41, 92, 133, 139
BanI	GGYRCC	2 cut(s)	167, 397
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	179, 318
BciT130I	CCWGG	2 cut(s)	137, 143
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	336, 362
BlsI	GCNGC	2 cut(s)	337, 363
Bme1390I	CCNGG	2 cut(s)	137, 143
Bme18I	GGWCC	4 cut(s)	41, 92, 133, 139
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	4 cut(s)	41, 92, 133, 139
BmiI	GGNNCC	5 cut(s)	42, 43, 93, 169, 399
BmrFI	CCNGG	2 cut(s)	137, 143
BmsI	GCATC	2 cut(s)	218, 429
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 334, 373, 407
BseBI	CCWGG	2 cut(s)	137, 143
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	171, 420
BseLI	CCNNNNNNNGG	4 cut(s)	142, 334, 373, 407
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	2 cut(s)	167, 397
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	4 cut(s)	142, 334, 373, 407
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	2 cut(s)	323, 337
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	20
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	5 cut(s)	42, 43, 93, 169, 399
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	2 cut(s)	167, 397
BspTNI	GGTCTC	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	137, 143
Bst4CI	ACNGT	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	171, 420
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	2 cut(s)	137, 143
BstSCI	CCNGG	2 cut(s)	135, 141
BstV1I	GCAGC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	171, 420
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 384
BveI	ACCTGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	136
Cfr13I	GGNCC	4 cut(s)	41, 92, 133, 139
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	3 cut(s)	17, 157, 239
CviJI	RGCY	6 cut(s)	104, 146, 248, 361, 370, 439
CviKI_1	RGCY	6 cut(s)	104, 146, 248, 361, 370, 439
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	4 cut(s)	41, 92, 133, 139
Eco88I	CYCGRG	1 cut(s)	88
EcoO109I	RGGNCCY	3 cut(s)	41, 92, 133
EcoRII	CCWGG	2 cut(s)	135, 141
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	20, 160, 242
FaiI	YATR	4 cut(s)	18, 158, 240, 315
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	3 cut(s)	16, 156, 238
Fnu4HI	GCNGC	2 cut(s)	336, 362
FokI	GGATG	2 cut(s)	158, 407
Fsp4HI	GCNGC	2 cut(s)	336, 362
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	2 cut(s)	336, 362
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	3 cut(s)	20, 160, 242
HinfI	GANTC	4 cut(s)	32, 61, 224, 262
HpaII	CCGG	1 cut(s)	259
Hpy188I	TCNGA	4 cut(s)	74, 188, 199, 349
Hpy188III	TCNNGA	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	157, 238
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	4 cut(s)	130, 238, 323, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	20, 160, 242
KflI	GGGWCCC	1 cut(s)	41
KpnI	GGTACC	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	2 cut(s)	218, 429
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	2 cut(s)	70, 233
MmeI	TCCRAC	2 cut(s)	276, 372
MnlI	CCTC	3 cut(s)	105, 267, 388
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	48, 405
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	2 cut(s)	137, 143
Mva1269I	GAATGC	2 cut(s)	323, 337
MvaI	CCWGG	2 cut(s)	137, 143
MwoI	GCNNNNNNNGC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	20, 160, 242
NlaIV	GGNNCC	5 cut(s)	42, 43, 93, 169, 399
NmuCI	GTSAC	1 cut(s)	120
PctI	GAATGC	2 cut(s)	323, 337
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	32, 262
PflMI	CCANNNNNTGG	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	337, 363
PleI	GAGTC	2 cut(s)	69, 232
PpsI	GAGTC	2 cut(s)	69, 232
PpuMI	RGGWCCY	3 cut(s)	41, 92, 133
Psp5II	RGGWCCY	3 cut(s)	41, 92, 133
Psp6I	CCWGG	2 cut(s)	135, 141
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	2 cut(s)	135, 141
PspN4I	GGNNCC	5 cut(s)	42, 43, 93, 169, 399
PspPI	GGNCC	4 cut(s)	41, 92, 133, 139
PspPPI	RGGWCCY	3 cut(s)	41, 92, 133
PstNI	CAGNNNCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	48, 405
SatI	GCNGC	2 cut(s)	336, 362
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	4 cut(s)	41, 92, 133, 139
SchI	GAGTC	2 cut(s)	70, 233
ScrFI	CCNGG	2 cut(s)	137, 143
SetI	ASST	5 cut(s)	135, 144, 372, 399, 403
SfaNI	GCATC	2 cut(s)	218, 429
SinI	GGWCC	4 cut(s)	41, 92, 133, 139
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	1 cut(s)	53
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	135, 141
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	388
TasI	AATT	1 cut(s)	299
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	32, 262
Tru1I	TTAA	2 cut(s)	48, 405
Tru9I	TTAA	2 cut(s)	48, 405
TscAI	CASTG	2 cut(s)	30, 391
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	30, 391
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	4 cut(s)	41, 92, 133, 139
XapI	RAATTY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.