Rh6AG423500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000347
Physical Location & Seq
Forward (+)
61614808 .. 61614978
171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG423500.1

Sequence Viewer

Length: 171 bp
ATGTTTGAGCTCCAATTGAATCAAGGCGTCGTTCTTCTCCGGAAGGCTGTGGCGCAATTCGCCGACCTGGCCAACATCACCAACGTCTGGCCGAAAGAAGTGATCTTACCGACTGCCGGCAACGCCATGATCTCCGAGGAGGACTTTGTCATTCTGCGGTTCCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.29

Weight (kDa)

4.66

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 2 cut(s) 69, 89
AcyI GRCGYC 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 87, 116
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 39
AoxI GGCC 2 cut(s) 69, 89
AspLEI GCGC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 70
BalI TGGCCA 1 cut(s) 71
BanII GRGCYC 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
Bbv12I GWGCWC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 116
Bse118I RCCGGY 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 39
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 87, 116
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 71, 91
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 2 cut(s) 40, 117
BslI CCNNNNNNNGG 2 cut(s) 87, 116
BsnI GGCC 2 cut(s) 71, 91
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 39
Bsp143I GATC 2 cut(s) 102, 129
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 71, 91
BspEI TCCGGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 102, 129
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 118
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 2 cut(s) 105, 132
BstMBI GATC 2 cut(s) 102, 129
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 122
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 71, 91
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 116
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 127
CviJI RGCY 4 cut(s) 10, 47, 71, 91
CviKI_1 RGCY 4 cut(s) 10, 47, 71, 91
DpnI GATC 2 cut(s) 104, 131
DpnII GATC 2 cut(s) 102, 129
EaeI YGGCCR 2 cut(s) 69, 89
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 12
GlaI GCGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 71, 91
HapII CCGG 2 cut(s) 40, 117
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 1 cut(s) 19
HpaII CCGG 2 cut(s) 40, 117
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 40, 163
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 122
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 39
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 102, 129
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 53, 53, 73, 80, 130
MaeII ACGT 1 cut(s) 84
MalI GATC 2 cut(s) 104, 131
MboI GATC 2 cut(s) 102, 129
MboII GAAGA 1 cut(s) 26
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 2 cut(s) 14, 56
MluNI TGGCCA 1 cut(s) 71
MnlI CCTC 2 cut(s) 130, 133
Mox20I TGGCCA 1 cut(s) 71
MroI TCCGGA 1 cut(s) 39
MroNI GCCGGC 1 cut(s) 116
MscI TGGCCA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 71
MspI CCGG 2 cut(s) 40, 117
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 122
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 2 cut(s) 102, 129
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 102, 129
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 12
SetI ASST 3 cut(s) 12, 69, 87
SgeI CNNG 8 cut(s) 35, 52, 79, 80, 100, 129, 139, 148
Sse9I AATT 2 cut(s) 14, 56
SsiI CCGC 1 cut(s) 157
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 66
TaiI ACGT 1 cut(s) 87
TasI AATT 2 cut(s) 14, 56
TfiI GAWTC 1 cut(s) 19
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.