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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 820, 855 |
| AccI | GTMKAC | 1 cut(s) | 703 |
| AccII | CGCG | 1 cut(s) | 893 |
| AccIII | TCCGGA | 1 cut(s) | 139 |
| AciI | CCGC | 4 cut(s) | 274, 672, 760, 941 |
| AclWI | GGATC | 1 cut(s) | 872 |
| AcsI | RAATTY | 1 cut(s) | 901 |
| AcuI | CTGAAG | 2 cut(s) | 71, 447 |
| AcyI | GRCGYC | 3 cut(s) | 794, 817, 852 |
| AfaI | GTAC | 3 cut(s) | 511, 843, 914 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 118, 838, 869, 969 |
| AgsI | TTSAA | 5 cut(s) | 29, 226, 256, 634, 934 |
| AhlI | ACTAGT | 1 cut(s) | 154 |
| AjnI | CCWGG | 1 cut(s) | 168 |
| AluBI | AGCT | 5 cut(s) | 32, 100, 222, 286, 481 |
| AluI | AGCT | 5 cut(s) | 32, 100, 222, 286, 481 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| Alw26I | GTCTC | 1 cut(s) | 593 |
| AlwI | GGATC | 1 cut(s) | 872 |
| Aor13HI | TCCGGA | 1 cut(s) | 139 |
| AoxI | GGCC | 4 cut(s) | 57, 120, 746, 972 |
| ApeKI | GCWGC | 2 cut(s) | 193, 283 |
| ApoI | RAATTY | 1 cut(s) | 901 |
| AspLEI | GCGC | 2 cut(s) | 450, 661 |
| AspS9I | GGNCC | 4 cut(s) | 353, 415, 829, 972 |
| AsuHPI | GGTGA | 3 cut(s) | 329, 820, 852 |
| AsuII | TTCGAA | 1 cut(s) | 531 |
| AvaII | GGWCC | 3 cut(s) | 353, 415, 829 |
| AxyI | CCTNAGG | 1 cut(s) | 20 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 904, 937 |
| BanII | GRGCYC | 2 cut(s) | 102, 588 |
| BbsI | GAAGAC | 3 cut(s) | 453, 565, 922 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BbvI | GCAGC | 2 cut(s) | 180, 295 |
| BccI | CCATC | 3 cut(s) | 139, 406, 713 |
| BceAI | ACGGC | 4 cut(s) | 44, 167, 793, 886 |
| BciT130I | CCWGG | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 610 |
| BcoDI | GTCTC | 1 cut(s) | 593 |
| BcuI | ACTAGT | 1 cut(s) | 154 |
| BfaI | CTAG | 2 cut(s) | 155, 750 |
| BfmI | CTRYAG | 1 cut(s) | 248 |
| BfoI | RGCGCY | 1 cut(s) | 662 |
| BglII | AGATCT | 1 cut(s) | 752 |
| BisI | GCNGC | 3 cut(s) | 194, 284, 672 |
| BlsI | GCNGC | 3 cut(s) | 195, 285, 673 |
| Bme1390I | CCNGG | 1 cut(s) | 170 |
| Bme18I | GGWCC | 3 cut(s) | 353, 415, 829 |
| BmgT120I | GGNCC | 4 cut(s) | 353, 415, 829, 972 |
| BmiI | GGNNCC | 2 cut(s) | 67, 973 |
| BmrFI | CCNGG | 1 cut(s) | 170 |
| BmsI | GCATC | 3 cut(s) | 169, 189, 584 |
| BpiI | GAAGAC | 3 cut(s) | 453, 565, 922 |
| Bpu14I | TTCGAA | 1 cut(s) | 531 |
| BpuEI | CTTGAG | 2 cut(s) | 60, 574 |
| BsaHI | GRCGYC | 3 cut(s) | 794, 817, 852 |
| BsaJI | CCNNGG | 3 cut(s) | 69, 168, 451 |
| BsaWI | WCCGGW | 1 cut(s) | 139 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 118, 838, 869, 969 |
| Bse1I | ACTGG | 1 cut(s) | 443 |
| Bse21I | CCTNAGG | 1 cut(s) | 20 |
| BseAI | TCCGGA | 1 cut(s) | 139 |
| BseBI | CCWGG | 1 cut(s) | 170 |
| BseDI | CCNNGG | 3 cut(s) | 69, 168, 451 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 118, 838, 869, 969 |
| BseMII | CTCAG | 2 cut(s) | 34, 594 |
| BseNI | ACTGG | 1 cut(s) | 443 |
| BseXI | GCAGC | 2 cut(s) | 180, 295 |
| Bsh1236I | CGCG | 1 cut(s) | 893 |
| Bsh1285I | CGRYCG | 1 cut(s) | 885 |
| BshFI | GGCC | 4 cut(s) | 59, 122, 748, 974 |
| BsiEI | CGRYCG | 1 cut(s) | 885 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| BsiSI | CCGG | 2 cut(s) | 140, 241 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 118, 838, 869, 969 |
| BsmAI | GTCTC | 1 cut(s) | 593 |
| BsnI | GGCC | 4 cut(s) | 59, 122, 748, 974 |
| Bsp119I | TTCGAA | 1 cut(s) | 531 |
| Bsp1286I | GDGCHC | 2 cut(s) | 102, 588 |
| Bsp13I | TCCGGA | 1 cut(s) | 139 |
| Bsp1407I | TGTACA | 1 cut(s) | 509 |
| Bsp143I | GATC | 4 cut(s) | 610, 752, 877, 882 |
| Bsp19I | CCATGG | 1 cut(s) | 69 |
| Bsp68I | TCGCGA | 1 cut(s) | 893 |
| BspACI | CCGC | 4 cut(s) | 274, 672, 760, 941 |
| BspANI | GGCC | 4 cut(s) | 59, 122, 748, 974 |
| BspCNI | CTCAG | 2 cut(s) | 33, 595 |
| BspEI | TCCGGA | 1 cut(s) | 139 |
| BspFNI | CGCG | 1 cut(s) | 893 |
| BspLI | GGNNCC | 2 cut(s) | 67, 973 |
| BspMAI | CTGCAG | 1 cut(s) | 252 |
| BspPI | GGATC | 1 cut(s) | 872 |
| BspT104I | TTCGAA | 1 cut(s) | 531 |
| BsrGI | TGTACA | 1 cut(s) | 509 |
| BsrI | ACTGG | 1 cut(s) | 443 |
| BssECI | CCNNGG | 3 cut(s) | 69, 168, 451 |
| BssMI | GATC | 4 cut(s) | 610, 752, 877, 882 |
| BssNI | GRCGYC | 3 cut(s) | 794, 817, 852 |
| BssT1I | CCWWGG | 2 cut(s) | 69, 451 |
| Bst2UI | CCWGG | 1 cut(s) | 170 |
| Bst4CI | ACNGT | 3 cut(s) | 210, 514, 528 |
| Bst6I | CTCTTC | 1 cut(s) | 829 |
| BstACI | GRCGYC | 3 cut(s) | 794, 817, 852 |
| BstAUI | TGTACA | 1 cut(s) | 509 |
| BstBI | TTCGAA | 1 cut(s) | 531 |
| BstC8I | GCNNGC | 2 cut(s) | 191, 300 |
| BstDEI | CTNAG | 4 cut(s) | 20, 419, 427, 603 |
| BstDSI | CCRYGG | 1 cut(s) | 69 |
| BstFNI | CGCG | 1 cut(s) | 893 |
| BstH2I | RGCGCY | 1 cut(s) | 662 |
| BstHHI | GCGC | 2 cut(s) | 450, 661 |
| BstKTI | GATC | 4 cut(s) | 613, 755, 880, 885 |
| BstMAI | GTCTC | 1 cut(s) | 593 |
| BstMBI | GATC | 4 cut(s) | 610, 752, 877, 882 |
| BstMCI | CGRYCG | 1 cut(s) | 885 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 38, 65, 80, 179, 199, 228, 237 |
| BstNI | CCWGG | 1 cut(s) | 170 |
| BstNSI | RCATGY | 1 cut(s) | 302 |
| BstSCI | CCNGG | 1 cut(s) | 168 |
| BstSFI | CTRYAG | 1 cut(s) | 248 |
| BstUI | CGCG | 1 cut(s) | 893 |
| BstV1I | GCAGC | 2 cut(s) | 180, 295 |
| BstV2I | GAAGAC | 3 cut(s) | 453, 565, 922 |
| BstX2I | RGATCY | 2 cut(s) | 752, 877 |
| BstYI | RGATCY | 2 cut(s) | 752, 877 |
| Bsu36I | CCTNAGG | 1 cut(s) | 20 |
| BsuRI | GGCC | 4 cut(s) | 59, 122, 748, 974 |
| BtgI | CCRYGG | 1 cut(s) | 69 |
| BtsI | GCAGTG | 1 cut(s) | 386 |
| BtsIMutI | CAGTG | 4 cut(s) | 386, 450, 486, 524 |
| BtuMI | TCGCGA | 1 cut(s) | 893 |
| Cac8I | GCNNGC | 2 cut(s) | 191, 300 |
| CfoI | GCGC | 2 cut(s) | 450, 661 |
| Cfr13I | GGNCC | 4 cut(s) | 353, 415, 829, 972 |
| CseI | GACGC | 2 cut(s) | 121, 783 |
| Csp6I | GTAC | 3 cut(s) | 510, 842, 913 |
| CviAII | CATG | 6 cut(s) | 70, 299, 396, 518, 614, 918 |
| CviQI | GTAC | 3 cut(s) | 510, 842, 913 |
| DdeI | CTNAG | 4 cut(s) | 20, 419, 427, 603 |
| DpnI | GATC | 4 cut(s) | 612, 754, 879, 884 |
| DpnII | GATC | 4 cut(s) | 610, 752, 877, 882 |
| DraI | TTTAAA | 1 cut(s) | 379 |
| Eam1104I | CTCTTC | 1 cut(s) | 829 |
| EarI | CTCTTC | 1 cut(s) | 829 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco130I | CCWWGG | 2 cut(s) | 69, 451 |
| Eco24I | GRGCYC | 2 cut(s) | 102, 588 |
| Eco32I | GATATC | 1 cut(s) | 643 |
| Eco47I | GGWCC | 3 cut(s) | 353, 415, 829 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| Eco57I | CTGAAG | 2 cut(s) | 71, 447 |
| Eco81I | CCTNAGG | 1 cut(s) | 20 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoO109I | RGGNCCY | 1 cut(s) | 353 |
| EcoRI | GAATTC | 1 cut(s) | 901 |
| EcoRII | CCWGG | 1 cut(s) | 168 |
| EcoRV | GATATC | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 2 cut(s) | 69, 451 |
| EcoT38I | GRGCYC | 2 cut(s) | 102, 588 |
| ErhI | CCWWGG | 2 cut(s) | 69, 451 |
| FaeI | CATG | 6 cut(s) | 73, 302, 399, 521, 617, 921 |
| FatI | CATG | 6 cut(s) | 69, 298, 395, 517, 613, 917 |
| FbaI | TGATCA | 1 cut(s) | 610 |
| FblI | GTMKAC | 1 cut(s) | 703 |
| Fnu4HI | GCNGC | 3 cut(s) | 194, 284, 672 |
| FriOI | GRGCYC | 2 cut(s) | 102, 588 |
| Fsp4HI | GCNGC | 3 cut(s) | 194, 284, 672 |
| FspBI | CTAG | 2 cut(s) | 155, 750 |
| GlaI | GCGC | 2 cut(s) | 449, 660 |
| GluI | GCNGC | 3 cut(s) | 194, 284, 672 |
| HaeII | RGCGCY | 1 cut(s) | 662 |
| HaeIII | GGCC | 4 cut(s) | 59, 122, 748, 974 |
| HapII | CCGG | 2 cut(s) | 140, 241 |
| HgaI | GACGC | 2 cut(s) | 121, 783 |
| HhaI | GCGC | 2 cut(s) | 450, 661 |
| Hin1I | GRCGYC | 3 cut(s) | 794, 817, 852 |
| Hin1II | CATG | 6 cut(s) | 73, 302, 399, 521, 617, 921 |
| Hin6I | GCGC | 2 cut(s) | 448, 659 |
| HinP1I | GCGC | 2 cut(s) | 448, 659 |
| HincII | GTYRAC | 1 cut(s) | 704 |
| HindII | GTYRAC | 1 cut(s) | 704 |
| HinfI | GANTC | 5 cut(s) | 244, 367, 400, 423, 725 |
| HpaII | CCGG | 2 cut(s) | 140, 241 |
| HphI | GGTGA | 3 cut(s) | 329, 820, 852 |
| Hpy166II | GTNNAC | 2 cut(s) | 510, 704 |
| Hpy188I | TCNGA | 6 cut(s) | 65, 405, 685, 772, 882, 907 |
| Hpy188III | TCNNGA | 5 cut(s) | 140, 260, 356, 591, 892 |
| Hpy8I | GTNNAC | 2 cut(s) | 510, 704 |
| Hpy99I | CGWCG | 7 cut(s) | 65, 107, 776, 779, 819, 854, 857 |
| HpyAV | CCTTC | 2 cut(s) | 46, 344 |
| HpyCH4III | ACNGT | 3 cut(s) | 210, 514, 528 |
| HpyCH4IV | ACGT | 2 cut(s) | 817, 852 |
| HpyCH4V | TGCA | 3 cut(s) | 250, 283, 302 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 38, 65, 80, 179, 199, 228, 237 |
| HpyF3I | CTNAG | 4 cut(s) | 20, 419, 427, 603 |
| HpySE526I | ACGT | 2 cut(s) | 817, 852 |
| Hsp92I | GRCGYC | 3 cut(s) | 794, 817, 852 |
| Hsp92II | CATG | 6 cut(s) | 73, 302, 399, 521, 617, 921 |
| HspAI | GCGC | 2 cut(s) | 448, 659 |
| Kpn2I | TCCGGA | 1 cut(s) | 139 |
| Ksp22I | TGATCA | 1 cut(s) | 610 |
| Kzo9I | GATC | 4 cut(s) | 610, 752, 877, 882 |
| LmnI | GCTCC | 2 cut(s) | 37, 65 |
| Lsp1109I | GCAGC | 2 cut(s) | 180, 295 |
| LweI | GCATC | 3 cut(s) | 169, 189, 584 |
| MaeI | CTAG | 2 cut(s) | 155, 750 |
| MaeII | ACGT | 2 cut(s) | 817, 852 |
| MaeIII | GTNAC | 2 cut(s) | 133, 818 |
| MalI | GATC | 4 cut(s) | 612, 754, 879, 884 |
| MboI | GATC | 4 cut(s) | 610, 752, 877, 882 |
| MboII | GAAGA | 5 cut(s) | 453, 565, 846, 887, 922 |
| MfeI | CAATTG | 1 cut(s) | 278 |
| MflI | RGATCY | 2 cut(s) | 752, 877 |
| MhlI | GDGCHC | 2 cut(s) | 102, 588 |
| MluCI | AATT | 4 cut(s) | 278, 559, 901, 934 |
| MlyI | GAGTC | 1 cut(s) | 719 |
| MmeI | TCCRAC | 2 cut(s) | 43, 795 |
| MnlI | CCTC | 8 cut(s) | 29, 49, 137, 278, 313, 532, 598, 778 |
| MroI | TCCGGA | 1 cut(s) | 139 |
| MseI | TTAA | 4 cut(s) | 86, 378, 800, 965 |
| MslI | CAYNNNNRTG | 1 cut(s) | 491 |
| MspA1I | CMGCKG | 1 cut(s) | 286 |
| MspI | CCGG | 2 cut(s) | 140, 241 |
| MspR9I | CCNGG | 1 cut(s) | 170 |
| MunI | CAATTG | 1 cut(s) | 278 |
| MvaI | CCWGG | 1 cut(s) | 170 |
| MvnI | CGCG | 1 cut(s) | 893 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 38, 65, 80, 179, 199, 228, 237 |
| NcoI | CCATGG | 1 cut(s) | 69 |
| NdeII | GATC | 4 cut(s) | 610, 752, 877, 882 |
| NlaIII | CATG | 6 cut(s) | 73, 302, 399, 521, 617, 921 |
| NlaIV | GGNNCC | 2 cut(s) | 67, 973 |
| NmeAIII | GCCGAG | 2 cut(s) | 724, 736 |
| NmuCI | GTSAC | 2 cut(s) | 133, 818 |
| NruI | TCGCGA | 1 cut(s) | 893 |
| NspI | RCATGY | 1 cut(s) | 302 |
| NspV | TTCGAA | 1 cut(s) | 531 |
| PaeI | GCATGC | 1 cut(s) | 302 |
| PfeI | GAWTC | 4 cut(s) | 244, 367, 400, 423 |
| PkrI | GCNGC | 3 cut(s) | 195, 285, 673 |
| Ple19I | CGATCG | 1 cut(s) | 885 |
| PleI | GAGTC | 1 cut(s) | 719 |
| PpsI | GAGTC | 1 cut(s) | 719 |
| PpuMI | RGGWCCY | 1 cut(s) | 353 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| Psp5II | RGGWCCY | 1 cut(s) | 353 |
| Psp6I | CCWGG | 1 cut(s) | 168 |
| PspGI | CCWGG | 1 cut(s) | 168 |
| PspN4I | GGNNCC | 2 cut(s) | 67, 973 |
| PspPI | GGNCC | 4 cut(s) | 353, 415, 829, 972 |
| PspPPI | RGGWCCY | 1 cut(s) | 353 |
| PstI | CTGCAG | 1 cut(s) | 252 |
| PsuI | RGATCY | 2 cut(s) | 752, 877 |
| PvuI | CGATCG | 1 cut(s) | 885 |
| PvuII | CAGCTG | 1 cut(s) | 286 |
| RruI | TCGCGA | 1 cut(s) | 893 |
| RsaI | GTAC | 3 cut(s) | 511, 843, 914 |
| RsaNI | GTAC | 3 cut(s) | 510, 842, 913 |
| RseI | CAYNNNNRTG | 1 cut(s) | 491 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SalI | GTCGAC | 1 cut(s) | 702 |
| SaqAI | TTAA | 4 cut(s) | 86, 378, 800, 965 |
| SatI | GCNGC | 3 cut(s) | 194, 284, 672 |
| Sau3AI | GATC | 4 cut(s) | 610, 752, 877, 882 |
| Sau96I | GGNCC | 4 cut(s) | 353, 415, 829, 972 |
| SchI | GAGTC | 1 cut(s) | 719 |
| ScrFI | CCNGG | 1 cut(s) | 170 |
| SduI | GDGCHC | 2 cut(s) | 102, 588 |
| SfaNI | GCATC | 3 cut(s) | 169, 189, 584 |
| SfcI | CTRYAG | 1 cut(s) | 248 |
| SfuI | TTCGAA | 1 cut(s) | 531 |
| SinI | GGWCC | 3 cut(s) | 353, 415, 829 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 491 |
| SmlI | CTYRAG | 2 cut(s) | 75, 589 |
| SmoI | CTYRAG | 2 cut(s) | 75, 589 |
| SpeI | ACTAGT | 1 cut(s) | 154 |
| SphI | GCATGC | 1 cut(s) | 302 |
| Sse9I | AATT | 4 cut(s) | 278, 559, 901, 934 |
| SsiI | CCGC | 4 cut(s) | 274, 672, 760, 941 |
| SspMI | CTAG | 2 cut(s) | 155, 750 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| StyD4I | CCNGG | 1 cut(s) | 168 |
| StyI | CCWWGG | 2 cut(s) | 69, 451 |
| TaaI | ACNGT | 3 cut(s) | 210, 514, 528 |
| TaiI | ACGT | 2 cut(s) | 820, 855 |
| TaqI | TCGA | 5 cut(s) | 15, 102, 218, 531, 703 |
| TaqII | GACCGA | 1 cut(s) | 846 |
| TasI | AATT | 4 cut(s) | 278, 559, 901, 934 |
| TatI | WGTACW | 1 cut(s) | 509 |
| TauI | GCSGC | 1 cut(s) | 674 |
| TfiI | GAWTC | 4 cut(s) | 244, 367, 400, 423 |
| Tru1I | TTAA | 4 cut(s) | 86, 378, 800, 965 |
| Tru9I | TTAA | 4 cut(s) | 86, 378, 800, 965 |
| TscAI | CASTG | 4 cut(s) | 393, 450, 493, 531 |
| TseFI | GTSAC | 2 cut(s) | 133, 818 |
| TseI | GCWGC | 2 cut(s) | 193, 283 |
| Tsp45I | GTSAC | 2 cut(s) | 133, 818 |
| TspDTI | ATGAA | 4 cut(s) | 249, 363, 384, 506 |
| TspGWI | ACGGA | 2 cut(s) | 539, 612 |
| TspRI | CASTG | 4 cut(s) | 393, 450, 493, 531 |
| VpaK11BI | GGWCC | 3 cut(s) | 353, 415, 829 |
| XapI | RAATTY | 1 cut(s) | 901 |
| XceI | RCATGY | 1 cut(s) | 302 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 393 |
| XmiI | GTMKAC | 1 cut(s) | 703 |
| XspI | CTAG | 2 cut(s) | 155, 750 |
| ZraI | GACGTC | 2 cut(s) | 818, 853 |