Rorug01G0237800

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000347
Physical Location & Seq
Forward (+)
34273756 .. 34276989
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0237800.1

Sequence Viewer

Length: 813 bp
ATGGAGGCGGAGAAAGCAGGGGCATCGTTGGACTCGCTGATCGCCGGGTTCAACAGTCGGATCTCGGAGCTCCAAGAGCTCGTTATTGCCCGAAACATGTACACGGCCAGCAGTGTCACCGATTTTTCGGCCGTCGACGCCGCCGTGAAGGCCATGGAGCTTCAGGTCCAGGTCATCAAGGACCGGGTTCGCGACGAAACCCTAGCCATTCCCAAAGCGAAAAAACTGATCGATGCATCGCTGAAGCAGCAAAGGAAATTGAAGGATATGTCAATTTATGCGCCCACTCATGTTCCTGAAAGAATGTCAATGTTGAATTTGGATACAAATAGATGTTTATTTCCAGATAGCTCTCAGCAAAACACTGGTTCTGGGACCTTCAAGCTTGACGAGGATCCTGCACCACCACCACCTAAGGAGAAAAAGGGTCGTTCCACGCCAGCTTTGTGGTTTATAAGTGCTGAAGAGCTGGATTCCTTGTCATCATACATGAGAGGAAGGCTTACACTAGAGAAGGTCAATGCAGCTATTAGTGACATGGCAACATATGCTGAAGCAAATTATCAGCTCATAGCTGCTCCAAAGAAGAATGTGGCAGGAGATCGATGGGAAAAAGCCTTGGAAATAAGAGATATAGCAATGCATGAAGCAGTAAAGGGAAAACACTTCTTTCTCGAAACTGACATGAAGGGACCATCCTTGAAGCTTGACAACTCTGGAAAAGCAATACTAACTATCCTTCGTCACCTTGGTCGTGTAAGTGAGGCACGGATTGGTCATCATCGGGTGATCATTCTTTTGAAGCCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

270

Amino Acids

29.98

Weight (kDa)

8.99

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKA1 PF07160 9 - 260 6.5e-83 Spindle and kinetochore-associated protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 8, 141
AclWI GGATC 3 cut(s) 68, 389, 402
AcoI YGGCCR 2 cut(s) 105, 129
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 4 cut(s) 146, 263, 483, 573
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 6 cut(s) 52, 262, 316, 382, 703, 802
AjnI CCWGG 1 cut(s) 168
Alw21I GWGCWC 2 cut(s) 72, 81
AlwI GGATC 3 cut(s) 68, 389, 402
AoxI GGCC 3 cut(s) 105, 129, 150
ApeKI GCWGC 3 cut(s) 247, 524, 575
ApoI RAATTY 1 cut(s) 316
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 4 cut(s) 166, 181, 375, 692
AsuC2I CCSGG 2 cut(s) 46, 185
AsuHPI GGTGA 3 cut(s) 109, 737, 799
AvaII GGWCC 4 cut(s) 166, 181, 375, 692
AxyI CCTNAGG 1 cut(s) 414
BamHI GGATCC 1 cut(s) 394
BanII GRGCYC 2 cut(s) 72, 81
Bbv12I GWGCWC 2 cut(s) 72, 81
BbvI GCAGC 3 cut(s) 259, 536, 562
BccI CCATC 2 cut(s) 600, 703
BceAI ACGGC 3 cut(s) 116, 120, 128
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 380, 414
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 316
BclI TGATCA 1 cut(s) 789
BcnI CCSGG 2 cut(s) 46, 185
BfaI CTAG 2 cut(s) 203, 509
BfuI GTATCC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 4 cut(s) 141, 248, 525, 576
BlsI GCNGC 4 cut(s) 142, 249, 526, 577
Bme1390I CCNGG 3 cut(s) 46, 170, 185
Bme18I GGWCC 4 cut(s) 166, 181, 375, 692
BmgT120I GGNCC 4 cut(s) 166, 181, 375, 692
BmiI GGNNCC 3 cut(s) 376, 396, 693
BmrFI CCNGG 3 cut(s) 46, 170, 185
BmsI GCATC 3 cut(s) 32, 223, 245
BpuMI CCSGG 2 cut(s) 46, 185
Bsa29I ATCGAT 2 cut(s) 231, 604
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 153, 618, 748
Bse1I ACTGG 1 cut(s) 370
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 1 cut(s) 170
BseCI ATCGAT 2 cut(s) 231, 604
BseDI CCNNGG 3 cut(s) 153, 618, 748
BseGI GGATG 1 cut(s) 695
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 370
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 3 cut(s) 259, 536, 562
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 107, 131, 152
BshVI ATCGAT 2 cut(s) 231, 604
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 72, 81
BsiSI CCGG 2 cut(s) 45, 184
BslFI GGGAC 2 cut(s) 388, 705
BsmFI GGGAC 2 cut(s) 388, 705
BsnI GGCC 3 cut(s) 107, 131, 152
Bsp1286I GDGCHC 2 cut(s) 72, 81
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 6 cut(s) 39, 60, 228, 394, 601, 789
Bsp19I CCATGG 1 cut(s) 153
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 2 cut(s) 8, 141
BspANI GGCC 3 cut(s) 107, 131, 152
BspCNI CTCAG 1 cut(s) 367
BspDI ATCGAT 2 cut(s) 231, 604
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 376, 396, 693
BspPI GGATC 3 cut(s) 68, 389, 402
BspQI GCTCTTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 153, 618, 748
BssMI GATC 6 cut(s) 39, 60, 228, 394, 601, 789
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 3 cut(s) 153, 618, 748
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 548
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 109, 441
BstDEI CTNAG 2 cut(s) 354, 414
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 695
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 6 cut(s) 42, 63, 231, 397, 604, 792
BstMBI GATC 6 cut(s) 39, 60, 228, 394, 601, 789
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 6 cut(s) 14, 76, 137, 149, 247, 548
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 3 cut(s) 44, 168, 183
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 259, 536, 562
BstX2I RGATCY 2 cut(s) 60, 394
BstXI CCANNNNNNTGG 1 cut(s) 447
BstYI RGATCY 2 cut(s) 60, 394
BstZI CGGCCG 1 cut(s) 129
Bsu15I ATCGAT 2 cut(s) 231, 604
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 3 cut(s) 107, 131, 152
BsuTUI ATCGAT 2 cut(s) 231, 604
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 695
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 3 cut(s) 118, 363, 808
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 109, 441
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 4 cut(s) 166, 181, 375, 692
ClaI ATCGAT 2 cut(s) 231, 604
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 100
CviAII CATG 7 cut(s) 97, 154, 290, 490, 538, 644, 685
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 354, 414
DpnI GATC 6 cut(s) 41, 62, 230, 396, 603, 791
DpnII GATC 6 cut(s) 39, 60, 228, 394, 601, 789
EaeI YGGCCR 2 cut(s) 105, 129
EagI CGGCCG 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 2 cut(s) 70, 79
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 3 cut(s) 153, 618, 748
Eco24I GRGCYC 2 cut(s) 72, 81
Eco47I GGWCC 4 cut(s) 166, 181, 375, 692
Eco52I CGGCCG 1 cut(s) 129
Eco53kI GAGCTC 2 cut(s) 70, 79
Eco57I CTGAAG 4 cut(s) 146, 263, 483, 573
Eco81I CCTNAGG 1 cut(s) 414
EcoICRI GAGCTC 2 cut(s) 70, 79
EcoO109I RGGNCCY 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 3 cut(s) 153, 618, 748
EcoT22I ATGCAT 2 cut(s) 238, 645
EcoT38I GRGCYC 2 cut(s) 72, 81
ErhI CCWWGG 3 cut(s) 153, 618, 748
FaeI CATG 7 cut(s) 100, 157, 293, 493, 541, 647, 688
FaqI GGGAC 2 cut(s) 388, 705
FatI CATG 7 cut(s) 96, 153, 289, 489, 537, 643, 684
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 789
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 141, 248, 525, 576
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 2 cut(s) 72, 81
Fsp4HI GCNGC 4 cut(s) 141, 248, 525, 576
FspBI CTAG 2 cut(s) 203, 509
GlaI GCGC 1 cut(s) 282
GluI GCNGC 4 cut(s) 141, 248, 525, 576
HaeIII GGCC 3 cut(s) 107, 131, 152
HapII CCGG 2 cut(s) 45, 184
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 7 cut(s) 100, 157, 293, 493, 541, 647, 688
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 2 cut(s) 383, 704
HinfI GANTC 2 cut(s) 32, 473
HpaII CCGG 2 cut(s) 45, 184
HphI GGTGA 3 cut(s) 109, 737, 799
Hpy166II GTNNAC 2 cut(s) 102, 136
Hpy188I TCNGA 2 cut(s) 60, 67
Hpy188III TCNNGA 5 cut(s) 191, 296, 344, 674, 717
Hpy8I GTNNAC 2 cut(s) 102, 136
Hpy99I CGWCG 3 cut(s) 137, 140, 197
HpyAV CCTTC 7 cut(s) 142, 256, 388, 492, 508, 682, 749
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 236, 401, 524, 643
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 76, 137, 149, 247, 548
HpyF3I CTNAG 2 cut(s) 354, 414
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 7 cut(s) 100, 157, 293, 493, 541, 647, 688
HspAI GCGC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 789
Kzo9I GATC 6 cut(s) 39, 60, 228, 394, 601, 789
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 4 cut(s) 67, 75, 157, 583
Lsp1109I GCAGC 3 cut(s) 259, 536, 562
LweI GCATC 3 cut(s) 32, 223, 245
MaeI CTAG 2 cut(s) 203, 509
MaeIII GTNAC 3 cut(s) 115, 533, 743
MalI GATC 6 cut(s) 41, 62, 230, 396, 603, 791
MboI GATC 6 cut(s) 39, 60, 228, 394, 601, 789
MboII GAAGA 2 cut(s) 476, 598
MflI RGATCY 2 cut(s) 60, 394
MhlI GDGCHC 2 cut(s) 72, 81
MluCI AATT 4 cut(s) 257, 273, 316, 559
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 9, 38
MnlI CCTC 3 cut(s) 385, 488, 757
Mph1103I ATGCAT 2 cut(s) 238, 645
MspI CCGG 2 cut(s) 45, 184
MspR9I CCNGG 3 cut(s) 46, 170, 185
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 6 cut(s) 14, 76, 137, 149, 247, 548
NciI CCSGG 2 cut(s) 46, 185
NcoI CCATGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 547
NdeII GATC 6 cut(s) 39, 60, 228, 394, 601, 789
NlaIII CATG 7 cut(s) 100, 157, 293, 493, 541, 647, 688
NlaIV GGNNCC 3 cut(s) 376, 396, 693
NmuCI GTSAC 3 cut(s) 115, 533, 743
NruI TCGCGA 1 cut(s) 192
NsiI ATGCAT 2 cut(s) 238, 645
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 4 cut(s) 142, 249, 526, 577
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 375
PscI ACATGT 1 cut(s) 96
PsiI TTATAA 1 cut(s) 455
Psp124BI GAGCTC 2 cut(s) 72, 81
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 3 cut(s) 376, 396, 693
PspPI GGNCC 4 cut(s) 166, 181, 375, 692
PspPPI RGGWCCY 1 cut(s) 375
PsuI RGATCY 2 cut(s) 60, 394
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SacI GAGCTC 2 cut(s) 72, 81
SalI GTCGAC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 459
SatI GCNGC 4 cut(s) 141, 248, 525, 576
Sau3AI GATC 6 cut(s) 39, 60, 228, 394, 601, 789
Sau96I GGNCC 4 cut(s) 166, 181, 375, 692
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 3 cut(s) 46, 170, 185
SduI GDGCHC 2 cut(s) 72, 81
SfaNI GCATC 3 cut(s) 32, 223, 245
SgrDI CGTCGACG 1 cut(s) 134
SinI GGWCC 4 cut(s) 166, 181, 375, 692
Sse9I AATT 4 cut(s) 257, 273, 316, 559
SsiI CCGC 2 cut(s) 8, 141
SspMI CTAG 2 cut(s) 203, 509
SstI GAGCTC 2 cut(s) 72, 81
StyD4I CCNGG 3 cut(s) 44, 168, 183
StyI CCWWGG 3 cut(s) 153, 618, 748
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 4 cut(s) 135, 231, 604, 675
TasI AATT 4 cut(s) 257, 273, 316, 559
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 473
TscAI CASTG 2 cut(s) 118, 370
TseFI GTSAC 3 cut(s) 115, 533, 743
TseI GCWGC 3 cut(s) 247, 524, 575
Tsp45I GTSAC 3 cut(s) 115, 533, 743
TspDTI ATGAA 2 cut(s) 660, 701
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 2 cut(s) 118, 370
VpaK11BI GGWCC 4 cut(s) 166, 181, 375, 692
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 203, 509
Zsp2I ATGCAT 2 cut(s) 238, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.