Rh1CG235200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Reverse (-)
49276945 .. 49279992
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG235200.1

Sequence Viewer

Length: 534 bp
ATGCCGCGGTGGTTCGACCTCAAGCTTGATCGGCGCAAATCGATTCTGATGAAGAAGGCCGTCGGAGCCATGGCTCAAGTAGCCTTTACAGACAGAGAGCTCGCCGGCCGCCCCCAAAACGCCGACCTCTGCGTCACTCCGGAGATCGTCGCACTGGTTTCCAAAACCAAGTCTACTGATGCCGTCAGCGCGCTGATGATGCCGGAACTCTTGATGTCGAGCTTCGAGTGCTACGAAAGCCGGAATCTGCAGTTCAATCTGCACAGCTTGCTTTGCCTATTGGAGCAGAACACTGAGTTTGCGGTCACTCTTTATGGCGAGGTAGAAGATGAGGATGTGATTTGGTATGAGCTTGAGGAAGAATCTAAAGACTCCAGGAATCCTATATATGCACTCAACAGCAATCTTTTTGATATCCAGCACAAGAGTGCGCTTCTCAATGCCGCTACGTTGTCAGAGATGATATGGATATGGTTCTCGGATTCGTTCACCATGCTCAATTTCCCAATTCGTGGCCTGGGGCCTGGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.16

Weight (kDa)

4.72

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 512
AccI GTMKAC 1 cut(s) 173
AccII CGCG 2 cut(s) 7, 191
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 5 cut(s) 5, 7, 109, 302, 444
AcoI YGGCCR 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 3 cut(s) 374, 516, 523
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 5 cut(s) 25, 100, 222, 267, 352
AluI AGCT 5 cut(s) 25, 100, 222, 267, 352
Alw21I GWGCWC 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 4 cut(s) 57, 106, 514, 521
AspLEI GCGC 4 cut(s) 36, 191, 193, 433
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 481
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BceAI ACGGC 2 cut(s) 44, 167
BciT130I CCWGG 3 cut(s) 376, 518, 525
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 3 cut(s) 5, 109, 444
BlsI GCNGC 3 cut(s) 6, 110, 445
Bme1390I CCNGG 3 cut(s) 376, 518, 525
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 67, 522
BmrFI CCNGG 3 cut(s) 376, 518, 525
BmsI GCATC 2 cut(s) 169, 189
BpmI CTGGAG 1 cut(s) 358
BpuEI CTTGAG 3 cut(s) 5, 60, 374
Bsa29I ATCGAT 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 5, 69, 517
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 3 cut(s) 376, 518, 525
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 3 cut(s) 5, 69, 517
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 159
BsePI GCGCGC 1 cut(s) 189
BseX3I CGGCCG 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 7, 191
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 59, 108, 516, 523
BshVI ATCGAT 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 4 cut(s) 105, 140, 203, 241
BslI CCNNNNNNNGG 1 cut(s) 512
BsnI GGCC 4 cut(s) 59, 108, 516, 523
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 28, 144
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 5 cut(s) 5, 7, 109, 302, 444
BspANI GGCC 4 cut(s) 59, 108, 516, 523
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 41
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 2 cut(s) 7, 191
BspLI GGNNCC 2 cut(s) 67, 522
BspMAI CTGCAG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 5, 69, 517
BssHII GCGCGC 1 cut(s) 189
BssMI GATC 2 cut(s) 28, 144
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 3 cut(s) 376, 518, 525
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 4 cut(s) 102, 106, 191, 269
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 2 cut(s) 5, 69
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 2 cut(s) 7, 191
BstHHI GCGC 4 cut(s) 36, 191, 193, 433
BstKTI GATC 2 cut(s) 31, 147
BstMBI GATC 2 cut(s) 28, 144
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
BstNI CCWGG 3 cut(s) 376, 518, 525
BstSCI CCNGG 3 cut(s) 374, 516, 523
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 2 cut(s) 7, 191
BstZI CGGCCG 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 4 cut(s) 59, 108, 516, 523
BsuTUI ATCGAT 1 cut(s) 41
BtgI CCRYGG 2 cut(s) 5, 69
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 152, 291
Cac8I GCNNGC 4 cut(s) 102, 106, 191, 269
CfoI GCGC 4 cut(s) 36, 191, 193, 433
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 521
Cfr42I CCGCGG 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 1 cut(s) 121
CviAII CATG 2 cut(s) 70, 493
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 30, 146
DpnII GATC 2 cut(s) 28, 144
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 415
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 3 cut(s) 374, 516, 523
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 73, 496
FatI CATG 2 cut(s) 69, 492
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 5, 109, 444
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 5, 109, 444
GlaI GCGC 4 cut(s) 35, 190, 192, 432
GluI GCNGC 3 cut(s) 5, 109, 444
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 4 cut(s) 59, 108, 516, 523
HapII CCGG 4 cut(s) 105, 140, 203, 241
HgaI GACGC 1 cut(s) 121
HhaI GCGC 4 cut(s) 36, 191, 193, 433
Hin1II CATG 2 cut(s) 73, 496
Hin6I GCGC 4 cut(s) 34, 189, 191, 431
HinP1I GCGC 4 cut(s) 34, 189, 191, 431
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 6 cut(s) 43, 244, 362, 371, 379, 482
HpaII CCGG 4 cut(s) 105, 140, 203, 241
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 174, 489
Hpy188I TCNGA 4 cut(s) 48, 65, 457, 481
Hpy188III TCNNGA 2 cut(s) 140, 211
Hpy8I GTNNAC 2 cut(s) 174, 489
Hpy99I CGWCG 2 cut(s) 65, 152
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 3 cut(s) 250, 262, 392
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 2 cut(s) 73, 496
HspAI GCGC 4 cut(s) 34, 189, 191, 431
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 28, 144
LmnI GCTCC 2 cut(s) 65, 283
LweI GCATC 2 cut(s) 169, 189
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 2 cut(s) 133, 304
MalI GATC 2 cut(s) 30, 146
MboI GATC 2 cut(s) 28, 144
MboII GAAGA 3 cut(s) 64, 338, 371
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 499, 507
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 29, 137, 313, 325, 349
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 4 cut(s) 105, 140, 203, 241
MspR9I CCNGG 3 cut(s) 376, 518, 525
MvaI CCWGG 3 cut(s) 376, 518, 525
MvnI CGCG 2 cut(s) 7, 191
MwoI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 28, 144
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 73, 496
NlaIV GGNNCC 2 cut(s) 67, 522
NmuCI GTSAC 2 cut(s) 133, 304
OliI CACNNNNGTG 1 cut(s) 426
PauI GCGCGC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 5 cut(s) 43, 244, 362, 379, 482
PflMI CCANNNNNTGG 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 374
PkrI GCNGC 3 cut(s) 6, 110, 445
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 3 cut(s) 374, 516, 523
PspGI CCWGG 3 cut(s) 374, 516, 523
PspN4I GGNNCC 2 cut(s) 67, 522
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 252
PteI GCGCGC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 8
SatI GCNGC 3 cut(s) 5, 109, 444
Sau3AI GATC 2 cut(s) 28, 144
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 3 cut(s) 376, 518, 525
SduI GDGCHC 1 cut(s) 102
SetI ASST 9 cut(s) 21, 27, 102, 129, 224, 269, 324, 354, 452
SfaNI GCATC 2 cut(s) 169, 189
SfcI CTRYAG 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 3 cut(s) 20, 75, 353
SmoI CTYRAG 3 cut(s) 20, 75, 353
Sse9I AATT 2 cut(s) 499, 507
SsiI CCGC 5 cut(s) 5, 7, 109, 302, 444
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 374, 516, 523
StyI CCWWGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 452
TaqI TCGA 4 cut(s) 15, 41, 218, 225
TasI AATT 2 cut(s) 499, 507
TauI GCSGC 3 cut(s) 7, 111, 446
TfiI GAWTC 5 cut(s) 43, 244, 362, 379, 482
TscAI CASTG 2 cut(s) 159, 298
TseFI GTSAC 2 cut(s) 133, 304
Tsp45I GTSAC 2 cut(s) 133, 304
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 2 cut(s) 159, 298
Van91I CCANNNNNTGG 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.