Rmu_sc0026369.1_g000001

pfkB family carbohydrate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026369.1
OG0000347
Physical Location & Seq
Reverse (-)
1 .. 1371
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026369.1_g000001.1.cds

Sequence Viewer

Length: 576 bp
atggaccgcctatccgcctcgccgcccgataagaaatactgggaagctggtggcaactgcaatatggctatagcagctgccaggttggggcttcgctgcaatgcaattggccatgtgggtaatgaagtgtatgggcggttcttattagatgttcttcgtgatgaaggaatcggtatggttgggatgaatgaggacactgatgctaacagttcaagtgcttcttcgtatgaaacacttttgtgctgggttcttgtggatcagttgcaaagacatggtttttgtagtcgagctgatttcagcaaggagcctgcattcagttggttgaccaaattatccgtacaagtaaagacagcgataaaacagtcaaagatcctgttctgtaatggttatggctttgacgagctctctcctgctgtaatagcctcagctgtagagtatgctgctgaagttggaacagcaatttttttcgaccctggaccccgcggaaagagcctctctgctggtacacccgaagaacaaggagcacttaacctgttgttgaggatgagtgacgttcttcttctaacttcagatgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PfkB

Protein Analysis

192

Amino Acids

20.75

Weight (kDa)

4.89

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 483
AciI CCGC 6 cut(s) 7, 15, 23, 136, 481, 483
AclWI GGATC 2 cut(s) 264, 364
AcoI YGGCCR 1 cut(s) 109
AcuI CTGAAG 2 cut(s) 465, 552
AfaI GTAC 2 cut(s) 339, 505
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 213
AjnI CCWGG 2 cut(s) 80, 472
AleI CACNNNNGTG 1 cut(s) 238
AluBI AGCT 5 cut(s) 47, 77, 290, 403, 428
AluI AGCT 5 cut(s) 47, 77, 290, 403, 428
Alw21I GWGCWC 2 cut(s) 405, 526
AlwI GGATC 2 cut(s) 264, 364
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 4 cut(s) 74, 77, 96, 440
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AspS9I GGNCC 2 cut(s) 4, 476
AvaII GGWCC 2 cut(s) 4, 476
BalI TGGCCA 1 cut(s) 111
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 405, 526
BbvCI CCTCAGC 1 cut(s) 424
BbvI GCAGC 4 cut(s) 64, 83, 86, 427
BciT130I CCWGG 2 cut(s) 82, 474
BfmI CTRYAG 2 cut(s) 69, 429
BisI GCNGC 5 cut(s) 23, 75, 78, 97, 441
BlsI GCNGC 5 cut(s) 24, 76, 79, 98, 442
Bme1390I CCNGG 2 cut(s) 82, 474
Bme18I GGWCC 2 cut(s) 4, 476
BmgT120I GGNCC 2 cut(s) 4, 476
BmiI GGNNCC 2 cut(s) 306, 478
BmrFI CCNGG 2 cut(s) 82, 474
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 472, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 82, 474
BseDI CCNNGG 2 cut(s) 472, 481
BseGI GGATG 2 cut(s) 189, 549
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 4 cut(s) 64, 83, 86, 427
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 405, 526
BslI CCNNNNNNNGG 1 cut(s) 87
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 405, 526
Bsp143I GATC 2 cut(s) 256, 369
BspACI CCGC 6 cut(s) 7, 15, 23, 136, 481, 483
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 437
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 306, 478
BspPI GGATC 2 cut(s) 264, 364
BsrDI GCAATG 1 cut(s) 106
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 472, 481
BssMI GATC 2 cut(s) 256, 369
Bst2UI CCWGG 2 cut(s) 82, 474
Bst4CI ACNGT 2 cut(s) 209, 363
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 424
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 2 cut(s) 189, 549
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 2 cut(s) 259, 372
BstMBI GATC 2 cut(s) 256, 369
BstMWI GCNNNNNNNGC 3 cut(s) 74, 419, 489
BstNI CCWGG 2 cut(s) 82, 474
BstSCI CCNGG 2 cut(s) 80, 472
BstSFI CTRYAG 2 cut(s) 69, 429
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 4 cut(s) 64, 83, 86, 427
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 2 cut(s) 189, 549
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 4, 476
Cfr42I CCGCGG 1 cut(s) 484
Csp6I GTAC 2 cut(s) 338, 504
CviAII CATG 2 cut(s) 113, 272
CviQI GTAC 2 cut(s) 338, 504
DdeI CTNAG 1 cut(s) 424
DpnI GATC 2 cut(s) 258, 371
DpnII GATC 2 cut(s) 256, 369
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 4, 476
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 465, 552
EcoICRI GAGCTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 80, 472
EcoT38I GRGCYC 1 cut(s) 405
FaeI CATG 2 cut(s) 116, 275
FaiI YATR 9 cut(s) 65, 71, 114, 132, 176, 228, 273, 390, 438
FalI AAGNNNNNCTT 4 cut(s) 205, 237, 510, 542
FatI CATG 2 cut(s) 112, 271
FauI CCCGC 1 cut(s) 488
Fnu4HI GCNGC 5 cut(s) 23, 75, 78, 97, 441
FokI GGATG 2 cut(s) 196, 556
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 5 cut(s) 23, 75, 78, 97, 441
GluI GCNGC 5 cut(s) 23, 75, 78, 97, 441
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 2 cut(s) 116, 275
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 324, 506
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 324, 506
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 209, 363
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 5 cut(s) 60, 99, 104, 265, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 419, 489
HpyF3I CTNAG 1 cut(s) 424
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 2 cut(s) 116, 275
KspI CCGCGG 1 cut(s) 484
Kzo9I GATC 2 cut(s) 256, 369
LmnI GCTCC 2 cut(s) 304, 521
Lsp1109I GCAGC 4 cut(s) 64, 83, 86, 427
LweI GCATC 1 cut(s) 190
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 548
MalI GATC 2 cut(s) 258, 371
MboI GATC 2 cut(s) 256, 369
MboII GAAGA 5 cut(s) 146, 213, 524, 548, 551
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 2 cut(s) 405, 526
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 3 cut(s) 105, 329, 459
MluNI TGGCCA 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 5 cut(s) 28, 184, 433, 503, 534
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 238
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 3 cut(s) 77, 428, 483
MspR9I CCNGG 2 cut(s) 82, 474
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 2 cut(s) 82, 474
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 74, 419, 489
NdeII GATC 2 cut(s) 256, 369
NlaIII CATG 2 cut(s) 116, 275
NlaIV GGNNCC 2 cut(s) 306, 478
NmuCI GTSAC 1 cut(s) 548
OliI CACNNNNGTG 1 cut(s) 238
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 5 cut(s) 24, 76, 79, 98, 442
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 80, 472
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 2 cut(s) 80, 472
PspN4I GGNNCC 2 cut(s) 306, 478
PspPI GGNCC 2 cut(s) 4, 476
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PsuI RGATCY 1 cut(s) 369
PvuII CAGCTG 2 cut(s) 77, 428
RsaI GTAC 2 cut(s) 339, 505
RsaNI GTAC 2 cut(s) 338, 504
RseI CAYNNNNRTG 1 cut(s) 238
SacI GAGCTC 1 cut(s) 405
SacII CCGCGG 1 cut(s) 484
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 5 cut(s) 23, 75, 78, 97, 441
Sau3AI GATC 2 cut(s) 256, 369
Sau96I GGNCC 2 cut(s) 4, 476
ScrFI CCNGG 2 cut(s) 82, 474
SduI GDGCHC 2 cut(s) 405, 526
SetI ASST 8 cut(s) 49, 79, 86, 292, 405, 430, 534, 555
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 2 cut(s) 69, 429
Sfr303I CCGCGG 1 cut(s) 484
SgrBI CCGCGG 1 cut(s) 484
SinI GGWCC 2 cut(s) 4, 476
SmiMI CAYNNNNRTG 1 cut(s) 238
Sse9I AATT 3 cut(s) 105, 329, 459
SsiI CCGC 6 cut(s) 7, 15, 23, 136, 481, 483
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 80, 472
TaaI ACNGT 2 cut(s) 209, 363
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 286, 468
TasI AATT 3 cut(s) 105, 329, 459
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 4 cut(s) 74, 77, 96, 440
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 4 cut(s) 138, 177, 200, 243
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 4, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.