Rh1DG247900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000347
Physical Location & Seq
Reverse (-)
46233955 .. 46234173
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG247900.1

Sequence Viewer

Length: 219 bp
ATGCCGCGGTGGTTTGAGCTCAACCTTGATCGCCGCAAAGAGATTTCGCTGAAGGAGGCCGTCAGAGCCATGGCTCAAGTAGCCTTAACCGACATAGAGCTTGTCGGCCGTCCCCAAAAGACCGACCTCTGCGTCACTCCGGAGATCGTTGCACTGGTTTCCAGAACCCAGGCTACTGATGCTGTCAGCGTGCTACTGATGCCGTCAGCATGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.0

Weight (kDa)

6.16

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 3 cut(s) 5, 7, 34
AcoI YGGCCR 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 71
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 2 cut(s) 19, 100
AluI AGCT 2 cut(s) 19, 100
Alw21I GWGCWC 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 57, 106
ApeKI GCWGC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 200
BceAI ACGGC 3 cut(s) 44, 93, 187
BciT130I CCWGG 1 cut(s) 170
BisI GCNGC 3 cut(s) 5, 34, 214
BlsI GCNGC 3 cut(s) 6, 35, 215
Bme1390I CCNGG 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 169, 189
BpuEI CTTGAG 1 cut(s) 60
BsaJI CCNNGG 3 cut(s) 5, 69, 168
BsaWI WCCGGW 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 5, 69, 168
BseNI ACTGG 1 cut(s) 159
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 59, 108
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 2 cut(s) 59, 108
Bsp1286I GDGCHC 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 28, 144
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 3 cut(s) 5, 7, 34
BspANI GGCC 2 cut(s) 59, 108
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 1 cut(s) 7
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 5, 69, 168
BssMI GATC 2 cut(s) 28, 144
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 191, 211
BstDSI CCRYGG 2 cut(s) 5, 69
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 2 cut(s) 31, 147
BstMBI GATC 2 cut(s) 28, 144
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 65, 80, 179, 199
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 200
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 2 cut(s) 59, 108
BtgI CCRYGG 2 cut(s) 5, 69
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 191, 211
Cfr42I CCGCGG 1 cut(s) 8
CseI GACGC 1 cut(s) 121
CviAII CATG 2 cut(s) 70, 210
CviJI RGCY 8 cut(s) 19, 59, 68, 74, 83, 100, 108, 173
CviKI_1 RGCY 8 cut(s) 19, 59, 68, 74, 83, 100, 108, 173
DpnI GATC 2 cut(s) 30, 146
DpnII GATC 2 cut(s) 28, 144
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 73, 213
FaiI YATR 3 cut(s) 71, 95, 211
FaqI GGGAC 1 cut(s) 96
FatI CATG 2 cut(s) 69, 209
Fnu4HI GCNGC 3 cut(s) 5, 34, 214
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 5, 34, 214
GluI GCNGC 3 cut(s) 5, 34, 214
HaeIII GGCC 2 cut(s) 59, 108
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 73, 213
HpaII CCGG 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 140, 162
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 80, 179, 199
Hsp92II CATG 2 cut(s) 73, 213
Kpn2I TCCGGA 1 cut(s) 139
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 28, 144
LpnPI CCDG 5 cut(s) 140, 153, 155, 175, 182
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 2 cut(s) 169, 189
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 30, 146
MboI GATC 2 cut(s) 28, 144
MhlI GDGCHC 1 cut(s) 21
MnlI CCTC 2 cut(s) 49, 137
MroI TCCGGA 1 cut(s) 139
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 65, 80, 179, 199
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 28, 144
NlaIII CATG 2 cut(s) 73, 213
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 213
PaeI GCATGC 1 cut(s) 213
PkrI GCNGC 3 cut(s) 6, 35, 215
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PsrI GAACNNNNNNTAC 2 cut(s) 157, 189
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 8
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 5, 34, 214
Sau3AI GATC 2 cut(s) 28, 144
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 21, 27, 102, 129
SfaNI GCATC 2 cut(s) 169, 189
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SphI GCATGC 1 cut(s) 213
SsiI CCGC 3 cut(s) 5, 7, 34
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 69
TaqII GACCGA 1 cut(s) 137
TauI GCSGC 2 cut(s) 7, 36
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 159
XceI RCATGY 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.