Rh1CG234300

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Forward (+)
49194315 .. 49198668
4354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG234300.1

Sequence Viewer

Length: 636 bp
ATGTCACGCTGGTTTGAGCTCAAGCTTGATTTTCCTGAAGCTATTCTGCTCAAGAAAGCCGTAAGAGTCTTCACTCAGGTAGCCTATTCAGACCGAGAGCTCCCCACTTCCATGTTCAACAATGTCATCCCCAACAACGCCGACCTCCACTTATCTCCGACGATGGTCCTACTGGTCTCTACAAACTCGCATTTTCGGTTTCCGGAAATGGCCACTGTGCTGGCGATGAAGCCGCCGTGCTCCTCCGTGTCGAGATTGTGGTGCTCCAAGAGCTGCCGCACGCTCTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAACACTGAGGATTCGGTTACTCTTTATGGTGATGAGGGAGCTGTTGATAGGATTTTCTATGAGATTGGGGATGATGAGGGCATTAAATACTCCTCCACACTGCCAGTGGTTTCATTGCGGGATCAGATTCAGATGGACCTAGGGTTCGTAGGATCTGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTCGTGCCTTTATCACTCAATCGGATTCTCATGGGTTTAAAGTTCATGCCAGAGTGTCACAAACCCAAGTTGTGCTCCGGGTAGTGAATAACGAGATGGTCTTCAGACCAGAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

211

Amino Acids

24.0

Weight (kDa)

6.52

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 233, 277, 442
AclWI GGATC 2 cut(s) 453, 484
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 3 cut(s) 57, 492, 604
AgsI TTSAA 2 cut(s) 118, 307
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 6 cut(s) 19, 25, 41, 100, 273, 365
AluI AGCT 6 cut(s) 19, 25, 41, 100, 273, 365
Alw21I GWGCWC 5 cut(s) 21, 102, 242, 266, 594
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 2 cut(s) 453, 484
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 273
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 463
AspS9I GGNCC 2 cut(s) 166, 460
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 2 cut(s) 166, 460
AvrII CCTAGG 1 cut(s) 463
BalI TGGCCA 1 cut(s) 212
BanII GRGCYC 2 cut(s) 21, 102
BbsI GAAGAC 3 cut(s) 61, 498, 610
Bbv12I GWGCWC 5 cut(s) 21, 102, 242, 266, 594
BbvI GCAGC 1 cut(s) 260
BccI CCATC 3 cut(s) 157, 451, 607
BceAI ACGGC 2 cut(s) 44, 220
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 464
BisI GCNGC 3 cut(s) 233, 274, 277
BlnI CCTAGG 1 cut(s) 463
BlsI GCNGC 3 cut(s) 234, 275, 278
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 2 cut(s) 166, 460
BmgT120I GGNCC 2 cut(s) 166, 460
BmrFI CCNGG 1 cut(s) 596
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 3 cut(s) 61, 498, 610
BpuEI CTTGAG 2 cut(s) 5, 35
BpuMI CCSGG 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 463
BsaWI WCCGGW 1 cut(s) 202
Bse1I ACTGG 3 cut(s) 177, 321, 428
Bse3DI GCAATG 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 2 cut(s) 126, 400
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 2 cut(s) 89, 321
BseNI ACTGG 3 cut(s) 177, 321, 428
BseRI GAGGAG 2 cut(s) 232, 406
BseXI GCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 5 cut(s) 21, 102, 242, 266, 594
BsiSI CCGG 2 cut(s) 203, 595
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 5 cut(s) 21, 102, 242, 266, 594
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 445, 476
BspACI CCGC 3 cut(s) 233, 277, 442
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 88, 322
BspEI TCCGGA 1 cut(s) 202
BspPI GGATC 2 cut(s) 453, 484
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 3 cut(s) 177, 321, 428
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 2 cut(s) 445, 476
BssT1I CCWWGG 1 cut(s) 463
Bst4CI ACNGT 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 222, 281
BstDEI CTNAG 2 cut(s) 75, 330
BstF5I GGATG 2 cut(s) 126, 400
BstKTI GATC 2 cut(s) 448, 479
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 2 cut(s) 445, 476
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 594
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 3 cut(s) 61, 498, 610
BstX2I RGATCY 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 126, 400
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 4 cut(s) 213, 327, 422, 435
Cac8I GCNNGC 2 cut(s) 222, 281
Cfr13I GGNCC 2 cut(s) 166, 460
CviAII CATG 3 cut(s) 112, 548, 563
DdeI CTNAG 2 cut(s) 75, 330
DpnI GATC 2 cut(s) 447, 478
DpnII GATC 2 cut(s) 445, 476
DraI TTTAAA 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 210
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco130I CCWWGG 1 cut(s) 463
Eco24I GRGCYC 2 cut(s) 21, 102
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 166, 460
Eco53kI GAGCTC 2 cut(s) 19, 100
Eco57I CTGAAG 3 cut(s) 57, 492, 604
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoT14I CCWWGG 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 21, 102
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 3 cut(s) 115, 551, 566
FaiI YATR 6 cut(s) 113, 351, 384, 549, 564, 634
FatI CATG 3 cut(s) 111, 547, 562
FauI CCCGC 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 233, 274, 277
FokI GGATG 2 cut(s) 113, 407
FriOI GRGCYC 2 cut(s) 21, 102
Fsp4HI GCNGC 3 cut(s) 233, 274, 277
FspBI CTAG 1 cut(s) 464
GluI GCNGC 3 cut(s) 233, 274, 277
HaeIII GGCC 1 cut(s) 212
HapII CCGG 2 cut(s) 203, 595
Hin1II CATG 3 cut(s) 115, 551, 566
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 4 cut(s) 66, 335, 451, 542
HpaII CCGG 2 cut(s) 203, 595
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 8 cut(s) 91, 159, 450, 456, 481, 511, 541, 623
Hpy188III TCNNGA 4 cut(s) 35, 52, 203, 252
Hpy99I CGWCG 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 2 cut(s) 75, 330
Hsp92II CATG 3 cut(s) 115, 551, 566
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 445, 476
LmnI GCTCC 5 cut(s) 105, 245, 269, 362, 597
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 3 cut(s) 3, 340, 573
MalI GATC 2 cut(s) 447, 478
MboI GATC 2 cut(s) 445, 476
MboII GAAGA 3 cut(s) 61, 498, 610
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 5 cut(s) 21, 102, 242, 266, 594
MlsI TGGCCA 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 8 cut(s) 155, 253, 325, 352, 394, 427, 486, 622
Mox20I TGGCCA 1 cut(s) 212
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 212
MseI TTAA 2 cut(s) 408, 555
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 2 cut(s) 203, 595
MspR9I CCNGG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 270
NciI CCSGG 1 cut(s) 596
NdeII GATC 2 cut(s) 445, 476
NlaIII CATG 3 cut(s) 115, 551, 566
NmuCI GTSAC 2 cut(s) 3, 573
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 335, 451, 542
PkrI GCNGC 3 cut(s) 234, 275, 278
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 21, 102
PspPI GGNCC 2 cut(s) 166, 460
PsuI RGATCY 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 2 cut(s) 21, 102
SaqAI TTAA 2 cut(s) 408, 555
SatI GCNGC 3 cut(s) 233, 274, 277
Sau3AI GATC 2 cut(s) 445, 476
Sau96I GGNCC 2 cut(s) 166, 460
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 5 cut(s) 21, 102, 242, 266, 594
SinI GGWCC 2 cut(s) 166, 460
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 20, 50
SmoI CTYRAG 2 cut(s) 20, 50
SsiI CCGC 3 cut(s) 233, 277, 442
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 251
TaqII GACCGA 1 cut(s) 108
TauI GCSGC 2 cut(s) 235, 279
TfiI GAWTC 3 cut(s) 335, 451, 542
Tru1I TTAA 2 cut(s) 408, 555
Tru9I TTAA 2 cut(s) 408, 555
TscAI CASTG 4 cut(s) 220, 334, 429, 435
TseFI GTSAC 2 cut(s) 3, 573
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 2 cut(s) 3, 573
TspDTI ATGAA 3 cut(s) 242, 426, 551
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 4 cut(s) 220, 334, 429, 435
VpaK11BI GGWCC 2 cut(s) 166, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.