Rroxscaffold_1G00022360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000347
Physical Location & Seq
Reverse (-)
27599205 .. 27600608
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022360.1

Sequence Viewer

Length: 210 bp
ATGTTTGAGCTCCAATTGAATCAAGGCGTCGTTCTTCTCCCGAAGGCCGTGGCGCAATTCGCCGAACCGGCCGACATCACCAACGTCTCACCGGAAGAGGTGATCTTGCCGACGGCCGGCAACGCCATGATTTCCGAGGAGGACTTCGTCATTCGCGGTTCCGCATCAATAGCTCTTTATAACAGTTGTAGTGGCTTTGCAACACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.34

Weight (kDa)

4.17

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 156, 162
AcoI YGGCCR 2 cut(s) 69, 114
AcyI GRCGYC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 2 cut(s) 10, 173
AluI AGCT 2 cut(s) 10, 173
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 91
AoxI GGCC 3 cut(s) 45, 69, 114
AspLEI GCGC 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 70, 81, 112
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BceAI ACGGC 2 cut(s) 32, 129
BcoDI GTCTC 1 cut(s) 91
BglI GCCNNNNNGGC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 160
BmsI GCATC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 48, 135
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse118I RCCGGY 2 cut(s) 67, 116
BseDI CCNNGG 2 cut(s) 48, 135
BseLI CCNNNNNNNGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 2 cut(s) 69, 114
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 2 cut(s) 72, 117
BshFI GGCC 3 cut(s) 47, 71, 116
BsiEI CGRYCG 2 cut(s) 72, 117
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 3 cut(s) 68, 92, 117
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsnI GGCC 3 cut(s) 47, 71, 116
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 2 cut(s) 156, 162
BspANI GGCC 3 cut(s) 47, 71, 116
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 160
BsrFI RCCGGY 2 cut(s) 67, 116
BssAI RCCGGY 2 cut(s) 67, 116
BssECI CCNNGG 2 cut(s) 48, 135
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 185, 207
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 102
BstMCI CGRYCG 2 cut(s) 72, 117
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 122, 170
BstUI CGCG 1 cut(s) 156
BstZI CGGCCG 2 cut(s) 69, 114
BsuRI GGCC 3 cut(s) 47, 71, 116
BtgI CCRYGG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 2 cut(s) 67, 116
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 127
CviJI RGCY 6 cut(s) 10, 47, 71, 116, 173, 195
CviKI_1 RGCY 6 cut(s) 10, 47, 71, 116, 173, 195
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
EaeI YGGCCR 2 cut(s) 69, 114
EagI CGGCCG 2 cut(s) 69, 114
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 10
EclXI CGGCCG 2 cut(s) 69, 114
Eco24I GRGCYC 1 cut(s) 12
Eco52I CGGCCG 2 cut(s) 69, 114
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 128, 180
FatI CATG 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 12
GlaI GCGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 47, 71, 116
HapII CCGG 3 cut(s) 68, 92, 117
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 1 cut(s) 19
HpaII CCGG 3 cut(s) 68, 92, 117
HphI GGTGA 3 cut(s) 70, 81, 112
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 32, 115
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 185, 207
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 122, 170
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 3 cut(s) 81, 105, 130
LweI GCATC 1 cut(s) 173
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 2 cut(s) 26, 107
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 14, 56
MnlI CCTC 3 cut(s) 91, 130, 133
MroNI GCCGGC 1 cut(s) 116
MspI CCGG 3 cut(s) 68, 92, 117
MunI CAATTG 1 cut(s) 14
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 122, 170
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 1 cut(s) 102
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 102
SduI GDGCHC 1 cut(s) 12
SetI ASST 4 cut(s) 12, 87, 102, 175
SfaNI GCATC 1 cut(s) 173
Sse9I AATT 2 cut(s) 14, 56
SsiI CCGC 2 cut(s) 156, 162
SstI GAGCTC 1 cut(s) 12
TaaI ACNGT 2 cut(s) 185, 207
TaiI ACGT 1 cut(s) 87
TasI AATT 2 cut(s) 14, 56
TfiI GAWTC 1 cut(s) 19
Tth111I GACNNNGTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.