Rh1CG234200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Forward (+)
49178355 .. 49190640
12286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG234200.1

Sequence Viewer

Length: 438 bp
ATGTGGCGGTGGTTCGACCTCAGGCTTGAAGCTCCCAAAGCGATTTCGCTGAAGGAGGCCGTCGGAGCCATGGCTCAAGTAGCCTTAACCGACATAGAGCTCGACGGCAGCCCCCAAAAGGCCAACCTCTGCGTCACTCCGGAGATGGTCGCACTGGTTTCCAAAACCCAGGCTACTGATGCCGTCAGCGTGCTGCTGCTGCCAAAACCGTTGATGACGAGCTTTAAGTGCTACGAAAGCCGGAATCTGCAGTTCAATCTGGAAATCCTCCACCGCCAATTGCAGCTGAACAATCTGCATGCGCTCATTCTTTATGGTGAGGTAGAAAGTAAGGATATGCTTGGCTATGAAGCATCATATGAAGCTAGCAAAGTATGTATGAACAGAAGTACAGAACAAGAACCCAATTTTACATGTATACATTGTCATCTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.37

Weight (kDa)

5.53

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 418
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 2 cut(s) 7, 274
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 2 cut(s) 29, 256
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 5 cut(s) 32, 100, 222, 286, 365
AluI AGCT 5 cut(s) 32, 100, 222, 286, 365
Alw21I GWGCWC 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 57, 120
ApeKI GCWGC 5 cut(s) 108, 193, 196, 199, 283
AspLEI GCGC 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 20
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 5 cut(s) 120, 180, 183, 186, 295
BccI CCATC 1 cut(s) 139
BceAI ACGGC 3 cut(s) 44, 121, 167
BciT130I CCWGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 2 cut(s) 248, 434
BisI GCNGC 5 cut(s) 109, 194, 197, 200, 284
BlsI GCNGC 5 cut(s) 110, 195, 198, 201, 285
Bme1390I CCNGG 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 169, 362
BmtI GCTAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 69, 168
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 69, 168
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 5 cut(s) 120, 180, 183, 186, 295
BshFI GGCC 2 cut(s) 59, 122
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 140, 241
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 2 cut(s) 59, 122
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 2 cut(s) 7, 274
BspANI GGCC 2 cut(s) 59, 122
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 69, 168
BssNAI GTATAC 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 210
BstC8I GCNNGC 3 cut(s) 191, 300, 367
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 304
BstMWI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 2 cut(s) 302, 417
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 2 cut(s) 248, 434
BstV1I GCAGC 5 cut(s) 120, 180, 183, 186, 295
BstZ17I GTATAC 1 cut(s) 419
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 2 cut(s) 59, 122
BtgI CCRYGG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 3 cut(s) 191, 300, 367
CfoI GCGC 1 cut(s) 304
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 390
CviAII CATG 3 cut(s) 70, 299, 414
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 3 cut(s) 73, 302, 417
FatI CATG 3 cut(s) 69, 298, 413
FauNDI CATATG 1 cut(s) 358
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 5 cut(s) 109, 194, 197, 200, 284
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 109, 194, 197, 200, 284
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 303
GluI GCNGC 5 cut(s) 109, 194, 197, 200, 284
HaeIII GGCC 2 cut(s) 59, 122
HapII CCGG 2 cut(s) 140, 241
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 304
Hin1II CATG 3 cut(s) 73, 302, 417
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 1 cut(s) 244
HpaII CCGG 2 cut(s) 140, 241
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 140, 260
Hpy8I GTNNAC 1 cut(s) 419
Hpy99I CGWCG 2 cut(s) 65, 107
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 250, 283, 298
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 3 cut(s) 73, 302, 417
HspAI GCGC 1 cut(s) 302
Kpn2I TCCGGA 1 cut(s) 139
LmnI GCTCC 2 cut(s) 37, 65
LpnPI CCDG 7 cut(s) 7, 140, 153, 155, 182, 245, 254
Lsp1109I GCAGC 5 cut(s) 120, 180, 183, 186, 295
LweI GCATC 2 cut(s) 169, 362
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 1 cut(s) 422
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 278, 406
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 29, 49, 137, 278, 313
MroI TCCGGA 1 cut(s) 139
MseI TTAA 2 cut(s) 86, 225
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 2 cut(s) 140, 241
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
NcoI CCATGG 1 cut(s) 69
NdeI CATATG 1 cut(s) 358
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 3 cut(s) 73, 302, 417
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 2 cut(s) 302, 417
PaeI GCATGC 1 cut(s) 302
PciI ACATGT 1 cut(s) 413
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 110, 195, 198, 201, 285
PscI ACATGT 1 cut(s) 413
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 86, 225
SatI GCNGC 5 cut(s) 109, 194, 197, 200, 284
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 102
SetI ASST 8 cut(s) 21, 34, 102, 129, 224, 288, 324, 367
SfaNI GCATC 2 cut(s) 169, 362
SfcI CTRYAG 2 cut(s) 248, 434
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SphI GCATGC 1 cut(s) 302
Sse9I AATT 2 cut(s) 278, 406
SsiI CCGC 2 cut(s) 7, 274
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 15, 102
TasI AATT 2 cut(s) 278, 406
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 86, 225
Tru9I TTAA 2 cut(s) 86, 225
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 5 cut(s) 108, 193, 196, 199, 283
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 363, 375, 395
TspRI CASTG 1 cut(s) 159
XceI RCATGY 2 cut(s) 302, 417
XmiI GTMKAC 1 cut(s) 418
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.