Prupe.2G163000_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21351576 .. 21353878
2303 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163000.1

Sequence Viewer

Length: 795 bp
ATGCTGCTTGAACTTAGCCTAAACCAAGGTTCTGTTCTTCTAAGGCAGGCAGTGAAACCCTTCACTCAGATGGGCTTCGATTGGGGCGAGATCTATGCCGCACCAGACGAAGTCATATTGACACCCTTCGATCCCACGTCCTTAATCCCAACCTTTACTTTGGCCCTGTGGATGAAATCTTCGATGTTCGAAACCTGTATCAACCATCAGAATGTCTGGCTTGCCTTCGACGTCCATAGCTTGTACCACAACAATCTCTGTCAAGTCAGGGATGATGATGATTTTGTCGGTCTCTATGTGGATGATGAAAATGATAATTTTGGTGGATTTGAGCTCAGCAATTACAGAACTCGGCGATTCATTGAAGGTGAAATCCCCTTGATTTCTGTGCACCTTCGTGACCTGGCTGTACCTACACCTCAGTTCCAACATGAATATCATGTGATCGTCGGGATACGTTCGAACGAGTTTAGGCGTCTTATCACTTATCTGGGCCATTTCGGAGTGTTAGTTGCTGCACGTGTAACAGATACTAAAGTTAAGTTCTCTGTAGGAGATGTAGAAGTTGTTTACAGTAAAGAGCTGAGGCAGTGTATTATCGGGGGTGATGTGGGGGAGGAAGATCCAGTTTTCCTGTTGTTCAATCTTGAACACGCTCGCGCAATCGAGACTGCTGCAGAGCTGTCCCAGATGGTGTGGTTGCTGGGCCAGTCCAATGGTTTATATGTCGTGCTGCTTTGCCCTGTTACTCAACTTGTTAACCTCATGTTTTGCTTTGGTCCTCCTCAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

265

Amino Acids

29.96

Weight (kDa)

4.75

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccII CGCG 1 cut(s) 660
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 125, 617
AcvI CACGTG 1 cut(s) 521
AcyI GRCGYC 2 cut(s) 231, 475
AfaI GTAC 2 cut(s) 245, 411
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 4 cut(s) 11, 365, 643, 650
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 4 cut(s) 240, 334, 583, 682
AluI AGCT 4 cut(s) 240, 334, 583, 682
Alw21I GWGCWC 2 cut(s) 336, 393
Alw26I GTCTC 2 cut(s) 296, 662
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 2 cut(s) 125, 617
AoxI GGCC 3 cut(s) 162, 493, 706
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 4 cut(s) 4, 515, 674, 733
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 4 cut(s) 163, 493, 706, 779
AsuHPI GGTGA 2 cut(s) 380, 617
AsuII TTCGAA 2 cut(s) 189, 461
AvaII GGWCC 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BanII GRGCYC 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 521
Bbv12I GWGCWC 2 cut(s) 336, 393
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 3 cut(s) 502, 661, 720
BccI CCATC 3 cut(s) 64, 213, 685
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 656, 690
BciT130I CCWGG 1 cut(s) 404
BciVI GTATCC 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 296, 662
BfmI CTRYAG 2 cut(s) 549, 675
BfuI GTATCC 1 cut(s) 447
BglII AGATCT 1 cut(s) 90
BisI GCNGC 5 cut(s) 5, 99, 516, 675, 734
BlpI GCTNAGC 1 cut(s) 335
BlsI GCNGC 5 cut(s) 6, 100, 517, 676, 735
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 779
BmgBI CACGTC 1 cut(s) 138
BmgT120I GGNCC 4 cut(s) 163, 493, 706, 779
BmrFI CCNGG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 584
Bpu1102I GCTNAGC 1 cut(s) 335
Bpu14I TTCGAA 2 cut(s) 189, 461
BpuEI CTTGAG 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 521
BsaHI GRCGYC 2 cut(s) 231, 475
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bse1I ACTGG 2 cut(s) 626, 709
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 3 cut(s) 177, 277, 307
BseMII CTCAG 4 cut(s) 80, 349, 434, 575
BseNI ACTGG 2 cut(s) 626, 709
BseRI GAGGAG 1 cut(s) 774
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 3 cut(s) 502, 661, 720
BseYI CCCAGC 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 660
BshFI GGCC 3 cut(s) 164, 495, 708
BsiHKAI GWGCWC 2 cut(s) 336, 393
BslFI GGGAC 1 cut(s) 670
BsmAI GTCTC 2 cut(s) 296, 662
BsmFI GGGAC 1 cut(s) 670
BsnI GGCC 3 cut(s) 164, 495, 708
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 2 cut(s) 189, 461
Bsp1286I GDGCHC 2 cut(s) 336, 393
Bsp143I GATC 4 cut(s) 90, 130, 444, 622
Bsp1720I GCTNAGC 1 cut(s) 335
BspACI CCGC 1 cut(s) 99
BspANI GGCC 3 cut(s) 164, 495, 708
BspCNI CTCAG 4 cut(s) 79, 348, 433, 576
BspFNI CGCG 1 cut(s) 660
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 2 cut(s) 125, 617
BspT104I TTCGAA 2 cut(s) 189, 461
BspTNI GGTCTC 1 cut(s) 296
BsrI ACTGG 2 cut(s) 626, 709
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 4 cut(s) 90, 130, 444, 622
BssNI GRCGYC 2 cut(s) 231, 475
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 575
BstACI GRCGYC 2 cut(s) 231, 475
BstBAI YACGTR 1 cut(s) 521
BstBI TTCGAA 2 cut(s) 189, 461
BstC8I GCNNGC 3 cut(s) 48, 222, 658
BstDEI CTNAG 6 cut(s) 14, 41, 66, 335, 420, 584
BstF5I GGATG 3 cut(s) 177, 277, 307
BstFNI CGCG 1 cut(s) 660
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 4 cut(s) 93, 133, 447, 625
BstMAI GTCTC 2 cut(s) 296, 662
BstMBI GATC 4 cut(s) 90, 130, 444, 622
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 2 cut(s) 549, 675
BstSLI GKGCMC 1 cut(s) 393
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 3 cut(s) 502, 661, 720
BstX2I RGATCY 2 cut(s) 90, 622
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 2 cut(s) 90, 622
BsuI GTATCC 1 cut(s) 447
BsuRI GGCC 3 cut(s) 164, 495, 708
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 3 cut(s) 177, 277, 307
BtsI GCAGTG 2 cut(s) 57, 596
BtsIMutI CAGTG 2 cut(s) 57, 596
Cac8I GCNNGC 3 cut(s) 48, 222, 658
CfoI GCGC 1 cut(s) 662
Cfr13I GGNCC 4 cut(s) 163, 493, 706, 779
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 244, 410
CviAII CATG 3 cut(s) 431, 440, 766
CviQI GTAC 2 cut(s) 244, 410
DdeI CTNAG 6 cut(s) 14, 41, 66, 335, 420, 584
DpnI GATC 4 cut(s) 92, 132, 446, 624
DpnII GATC 4 cut(s) 90, 130, 444, 622
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 779
Eco53kI GAGCTC 1 cut(s) 334
Eco72I CACGTG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 3 cut(s) 434, 443, 769
FaiI YATR 9 cut(s) 96, 116, 237, 297, 432, 441, 724, 726, 767
FaqI GGGAC 1 cut(s) 670
FatI CATG 3 cut(s) 430, 439, 765
Fnu4HI GCNGC 5 cut(s) 5, 99, 516, 675, 734
FokI GGATG 3 cut(s) 184, 284, 314
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 5 cut(s) 5, 99, 516, 675, 734
GlaI GCGC 1 cut(s) 661
GluI GCNGC 5 cut(s) 5, 99, 516, 675, 734
GsaI CCCAGC 1 cut(s) 707
HaeIII GGCC 3 cut(s) 164, 495, 708
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 662
Hin1I GRCGYC 2 cut(s) 231, 475
Hin1II CATG 3 cut(s) 434, 443, 769
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 1 cut(s) 357
HpaI GTTAAC 1 cut(s) 760
HphI GGTGA 2 cut(s) 380, 617
Hpy166II GTNNAC 3 cut(s) 391, 571, 760
Hpy188I TCNGA 3 cut(s) 69, 210, 503
Hpy188III TCNNGA 4 cut(s) 398, 451, 647, 667
Hpy8I GTNNAC 3 cut(s) 391, 571, 760
Hpy99I CGWCG 2 cut(s) 233, 452
HpyAV CCTTC 5 cut(s) 70, 136, 235, 359, 404
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4IV ACGT 4 cut(s) 137, 231, 457, 520
HpyCH4V TGCA 3 cut(s) 391, 518, 677
HpyF3I CTNAG 6 cut(s) 14, 41, 66, 335, 420, 584
HpySE526I ACGT 4 cut(s) 137, 231, 457, 520
Hsp92I GRCGYC 2 cut(s) 231, 475
Hsp92II CATG 3 cut(s) 434, 443, 769
HspAI GCGC 1 cut(s) 660
KspAI GTTAAC 1 cut(s) 760
Kzo9I GATC 4 cut(s) 90, 130, 444, 622
Lsp1109I GCAGC 3 cut(s) 502, 661, 720
MaeII ACGT 4 cut(s) 137, 231, 457, 520
MaeIII GTNAC 3 cut(s) 398, 523, 745
MalI GATC 4 cut(s) 92, 132, 446, 624
MboI GATC 4 cut(s) 90, 130, 444, 622
MboII GAAGA 3 cut(s) 29, 171, 632
MflI RGATCY 2 cut(s) 90, 622
MhlI GDGCHC 2 cut(s) 336, 393
MluCI AATT 2 cut(s) 316, 340
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 6 cut(s) 429, 579, 610, 773, 792, 795
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 143, 540, 759
MslI CAYNNNNRTG 3 cut(s) 68, 210, 396
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 660
NdeII GATC 4 cut(s) 90, 130, 444, 622
NlaIII CATG 3 cut(s) 434, 443, 769
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 398
NspV TTCGAA 2 cut(s) 189, 461
OliI CACNNNNGTG 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 357
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 6, 100, 517, 676, 735
PmaCI CACGTG 1 cut(s) 521
PmlI CACGTG 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 402
PspCI CACGTG 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 402
PspPI GGNCC 4 cut(s) 163, 493, 706, 779
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 90, 622
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 2 cut(s) 245, 411
RsaNI GTAC 2 cut(s) 244, 410
RseI CAYNNNNRTG 3 cut(s) 68, 210, 396
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 143, 540, 759
SatI GCNGC 5 cut(s) 5, 99, 516, 675, 734
Sau3AI GATC 4 cut(s) 90, 130, 444, 622
Sau96I GGNCC 4 cut(s) 163, 493, 706, 779
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 2 cut(s) 336, 393
SfcI CTRYAG 2 cut(s) 549, 675
SfuI TTCGAA 2 cut(s) 189, 461
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 3 cut(s) 68, 210, 396
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 2 cut(s) 316, 340
SsiI CCGC 1 cut(s) 99
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 575
TaiI ACGT 4 cut(s) 140, 234, 460, 523
TaqI TCGA 7 cut(s) 78, 129, 182, 189, 228, 461, 666
TaqII GACCGA 1 cut(s) 278
TasI AATT 2 cut(s) 316, 340
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 3 cut(s) 143, 540, 759
Tru9I TTAA 3 cut(s) 143, 540, 759
TscAI CASTG 2 cut(s) 57, 596
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 4 cut(s) 4, 515, 674, 733
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 4 cut(s) 188, 321, 349, 447
TspRI CASTG 2 cut(s) 57, 596
Tth111I GACNNNGTC 1 cut(s) 110
VneI GTGCAC 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 779
XmnI GAANNNNTTC 1 cut(s) 59
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.