Rh1DG249500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000347
Physical Location & Seq
Reverse (-)
46338808 .. 46340883
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG249500.1

Sequence Viewer

Length: 639 bp
ATGCCGCGGTGGTTCGACCTCAAGCTTGATCGGCGCAAAGCGATTCTGCTGAAGAAGGCCGTCGGAGCCATGGCTCAAGTAGCCTTTACGGACAGAGAGCTCGCCGGCCGCCCCCAAAACGCCGACCTCTGCGTCACTCCGGAGATCGTCGCACTGGTTTCCAAAACCAAGTCTACTGATGCCGTCAGCGCGCTGATGATGCCGGAACTGTTGATGTCGAGCTTCGAGTGCTACGAAAGCCGGAACCTGCAGTTCAATCTGCACAGCTTGCTTTGCCTATTGGAGCAGAACACTGAGTTTGCGGTCACTCTTTATGGCGAGGTAGAAGATGAGGATGTGATTTGGTATGAGCTTGAGGAAGTTCATGCCACACTGTTCAAAGATGTAGTTGTTTTCCGTGTAGTGAATTACGAGCTTGTCTTCCCAACAGAGCCCTTGATTTGCGAGACTCAGAGTGATCGTGGATTTCCTTGTGTGTTGAAGTTTGATATCCAGCACAAGAGCGCGCTTCTCAATGCCGCTACGTTGTCAGAGATGATATGGATATGGTTCTCAGATTCGTTCACCATGCTCAATTTCCCAATTCGTGGCCTGGGAAAACTTGTCTTTGGCCATCATAACTTTATGGTGACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.28

Weight (kDa)

5.04

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 587
AccI GTMKAC 1 cut(s) 173
AccII CGCG 3 cut(s) 7, 191, 506
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 5 cut(s) 5, 7, 109, 302, 519
AcoI YGGCCR 2 cut(s) 106, 610
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 587
AgsI TTSAA 3 cut(s) 256, 379, 481
AjnI CCWGG 1 cut(s) 591
AluBI AGCT 6 cut(s) 25, 100, 222, 267, 352, 415
AluI AGCT 6 cut(s) 25, 100, 222, 267, 352, 415
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 4 cut(s) 57, 106, 589, 610
AspLEI GCGC 5 cut(s) 36, 191, 193, 506, 508
AsuHPI GGTGA 1 cut(s) 556
BalI TGGCCA 1 cut(s) 612
BanII GRGCYC 2 cut(s) 102, 435
BbsI GAAGAC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 1 cut(s) 621
BceAI ACGGC 2 cut(s) 44, 167
BciT130I CCWGG 1 cut(s) 593
BcoDI GTCTC 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 3 cut(s) 5, 109, 519
BlsI GCNGC 3 cut(s) 6, 110, 520
Bme1390I CCNGG 1 cut(s) 593
BmiI GGNNCC 2 cut(s) 67, 245
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 2 cut(s) 169, 189
BpiI GAAGAC 1 cut(s) 412
BpuEI CTTGAG 3 cut(s) 5, 60, 374
BsaJI CCNNGG 3 cut(s) 5, 69, 592
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 3 cut(s) 5, 69, 592
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 587
BseMII CTCAG 3 cut(s) 285, 464, 567
BseNI ACTGG 1 cut(s) 159
BsePI GCGCGC 2 cut(s) 189, 504
BseX3I CGGCCG 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 3 cut(s) 7, 191, 506
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 59, 108, 591, 612
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 4 cut(s) 105, 140, 203, 241
BslI CCNNNNNNNGG 1 cut(s) 587
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 4 cut(s) 59, 108, 591, 612
Bsp1286I GDGCHC 2 cut(s) 102, 435
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 3 cut(s) 28, 144, 457
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 5 cut(s) 5, 7, 109, 302, 519
BspANI GGCC 4 cut(s) 59, 108, 591, 612
BspCNI CTCAG 3 cut(s) 286, 463, 566
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 3 cut(s) 7, 191, 506
BspLI GGNNCC 2 cut(s) 67, 245
BspMAI CTGCAG 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 5, 69, 592
BssHII GCGCGC 2 cut(s) 189, 504
BssMI GATC 3 cut(s) 28, 144, 457
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 2 cut(s) 210, 375
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 5 cut(s) 102, 106, 191, 269, 506
BstDEI CTNAG 3 cut(s) 294, 450, 553
BstDSI CCRYGG 2 cut(s) 5, 69
BstEII GGTNACC 1 cut(s) 628
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 3 cut(s) 7, 191, 506
BstHHI GCGC 5 cut(s) 36, 191, 193, 506, 508
BstKTI GATC 3 cut(s) 31, 147, 460
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 3 cut(s) 28, 144, 457
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
BstNI CCWGG 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 3 cut(s) 7, 191, 506
BstV2I GAAGAC 1 cut(s) 412
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 4 cut(s) 59, 108, 591, 612
BtgI CCRYGG 2 cut(s) 5, 69
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 3 cut(s) 152, 291, 371
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 102, 106, 191, 269, 506
CfoI GCGC 5 cut(s) 36, 191, 193, 506, 508
Cfr10I RCCGGY 1 cut(s) 104
Cfr42I CCGCGG 1 cut(s) 8
CseI GACGC 1 cut(s) 121
CviAII CATG 3 cut(s) 70, 365, 568
DdeI CTNAG 3 cut(s) 294, 450, 553
DpnI GATC 3 cut(s) 30, 146, 459
DpnII GATC 3 cut(s) 28, 144, 457
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 106, 610
EagI CGGCCG 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 102, 435
Eco32I GATATC 1 cut(s) 490
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 591
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 102, 435
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 3 cut(s) 73, 368, 571
FaiI YATR 9 cut(s) 71, 315, 348, 366, 541, 547, 569, 618, 626
FatI CATG 3 cut(s) 69, 364, 567
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 5, 109, 519
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 2 cut(s) 102, 435
Fsp4HI GCNGC 3 cut(s) 5, 109, 519
GlaI GCGC 5 cut(s) 35, 190, 192, 505, 507
GluI GCNGC 3 cut(s) 5, 109, 519
HaeIII GGCC 4 cut(s) 59, 108, 591, 612
HapII CCGG 4 cut(s) 105, 140, 203, 241
HgaI GACGC 1 cut(s) 121
HhaI GCGC 5 cut(s) 36, 191, 193, 506, 508
Hin1II CATG 3 cut(s) 73, 368, 571
Hin6I GCGC 5 cut(s) 34, 189, 191, 504, 506
HinP1I GCGC 5 cut(s) 34, 189, 191, 504, 506
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 3 cut(s) 43, 448, 557
HpaII CCGG 4 cut(s) 105, 140, 203, 241
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 174, 564
Hpy188I TCNGA 4 cut(s) 65, 453, 532, 556
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 174, 564
Hpy99I CGWCG 2 cut(s) 65, 152
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 210, 375
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 2 cut(s) 250, 262
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
HpyF3I CTNAG 3 cut(s) 294, 450, 553
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 3 cut(s) 73, 368, 571
HspAI GCGC 5 cut(s) 34, 189, 191, 504, 506
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 3 cut(s) 28, 144, 457
LmnI GCTCC 2 cut(s) 65, 283
LpnPI CCDG 9 cut(s) 118, 140, 153, 216, 254, 260, 506, 578, 605
LweI GCATC 2 cut(s) 169, 189
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 3 cut(s) 133, 304, 628
MalI GATC 3 cut(s) 30, 146, 459
MboI GATC 3 cut(s) 28, 144, 457
MboII GAAGA 3 cut(s) 64, 338, 412
MhlI GDGCHC 2 cut(s) 102, 435
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 4 cut(s) 406, 574, 582, 634
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 29, 137, 313, 325, 349
Mox20I TGGCCA 1 cut(s) 612
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 612
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 4 cut(s) 105, 140, 203, 241
MspR9I CCNGG 1 cut(s) 593
MvaI CCWGG 1 cut(s) 593
MvnI CGCG 3 cut(s) 7, 191, 506
MwoI GCNNNNNNNGC 9 cut(s) 31, 65, 80, 188, 199, 228, 237, 268, 273
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 69
NdeII GATC 3 cut(s) 28, 144, 457
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 3 cut(s) 73, 368, 571
NlaIV GGNNCC 2 cut(s) 67, 245
NmuCI GTSAC 3 cut(s) 133, 304, 628
PauI GCGCGC 2 cut(s) 189, 504
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 43, 557
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 3 cut(s) 6, 110, 520
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 591
PspEI GGTNACC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 2 cut(s) 67, 245
PstI CTGCAG 1 cut(s) 252
PteI GCGCGC 2 cut(s) 189, 504
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 8
SatI GCNGC 3 cut(s) 5, 109, 519
Sau3AI GATC 3 cut(s) 28, 144, 457
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 2 cut(s) 102, 435
SfaNI GCATC 2 cut(s) 169, 189
SfcI CTRYAG 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SmlI CTYRAG 3 cut(s) 20, 75, 353
SmoI CTYRAG 3 cut(s) 20, 75, 353
Sse9I AATT 4 cut(s) 406, 574, 582, 634
SsiI CCGC 5 cut(s) 5, 7, 109, 302, 519
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 210, 375
TaiI ACGT 1 cut(s) 527
TaqI TCGA 3 cut(s) 15, 218, 225
TasI AATT 4 cut(s) 406, 574, 582, 634
TauI GCSGC 3 cut(s) 7, 111, 521
TfiI GAWTC 2 cut(s) 43, 557
TscAI CASTG 3 cut(s) 159, 298, 378
TseFI GTSAC 3 cut(s) 133, 304, 628
Tsp45I GTSAC 3 cut(s) 133, 304, 628
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 2 cut(s) 104, 386
TspRI CASTG 3 cut(s) 159, 298, 378
Van91I CCANNNNNTGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.