Rh1BG222000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000347
Physical Location & Seq
Forward (+)
34135045 .. 34136612
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG222000.1

Sequence Viewer

Length: 318 bp
ATGGTCTTCAGACCAGAGGCGGCAGCTCATGTGTTCGAGATTGAAGTATTAGTGGCAACTCCTTATCATGTTATTTATTTGATCCCCTGTTTAACTGTAGTGCAGCCCGGGGTTTGCGAGATTGAGAGTGATGGAGGTAGATATCCATTTGTGTTGAAGTATGATCTCCAGCACAAGAGAGCGTTTCTCAATGCCGCTATGCTGTCAGAGATGGTATGGATACTTAACTCTGTGGAGTTGTTCACCGTGCTGAGCTTCCCTATTGTTGGCCTGGGTAACCTCATGTTTACCCAACTGAACCCTGTGGTGCCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.79

Weight (kDa)

5.13

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 2 cut(s) 20, 195
AclWI GGATC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 2 cut(s) 44, 157
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 26, 255
AluI AGCT 2 cut(s) 26, 255
AlwI GGATC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 23, 103
AsuC2I CCSGG 2 cut(s) 108, 109
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 2 cut(s) 35, 115
BccI CCATC 2 cut(s) 125, 205
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 213
BcnI CCSGG 2 cut(s) 108, 109
BfmI CTRYAG 1 cut(s) 96
BfuI GTATCC 1 cut(s) 213
BisI GCNGC 4 cut(s) 21, 24, 104, 195
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 4 cut(s) 22, 25, 105, 196
Bme1390I CCNGG 3 cut(s) 108, 109, 272
BmeT110I CYCGRG 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 3 cut(s) 108, 109, 272
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BpmI CTGGAG 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 108, 109
BsaJI CCNNGG 3 cut(s) 107, 108, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 107, 108, 271
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 2 cut(s) 35, 115
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 266
BsnI GGCC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 81, 163
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 2 cut(s) 20, 195
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 107, 108, 271
BssMI GATC 2 cut(s) 81, 163
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 97, 247
BstDEI CTNAG 1 cut(s) 251
BstEII GGTNACC 1 cut(s) 275
BstKTI GATC 2 cut(s) 84, 166
BstMBI GATC 2 cut(s) 81, 163
BstNI CCWGG 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 106, 107, 270
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 35, 115
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 270
Cfr9I CCCGGG 1 cut(s) 107
CviAII CATG 3 cut(s) 29, 68, 283
CviJI RGCY 4 cut(s) 26, 106, 255, 270
CviKI_1 RGCY 4 cut(s) 26, 106, 255, 270
DdeI CTNAG 1 cut(s) 251
DpnI GATC 2 cut(s) 83, 165
DpnII GATC 2 cut(s) 81, 163
Eco32I GATATC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 143
FaeI CATG 3 cut(s) 32, 71, 286
FaiI YATR 6 cut(s) 30, 69, 162, 200, 217, 284
FatI CATG 3 cut(s) 28, 67, 282
Fnu4HI GCNGC 4 cut(s) 21, 24, 104, 195
Fsp4HI GCNGC 4 cut(s) 21, 24, 104, 195
GluI GCNGC 4 cut(s) 21, 24, 104, 195
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 108
Hin1II CATG 3 cut(s) 32, 71, 286
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 2 cut(s) 243, 288
Hpy188I TCNGA 2 cut(s) 11, 208
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 243, 288
HpyCH4III ACNGT 2 cut(s) 97, 247
HpyCH4V TGCA 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 3 cut(s) 32, 71, 286
Kzo9I GATC 2 cut(s) 81, 163
LpnPI CCDG 6 cut(s) 27, 100, 121, 182, 257, 284
Lsp1109I GCAGC 2 cut(s) 35, 115
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 83, 165
MboI GATC 2 cut(s) 81, 163
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 313
MnlI CCTC 3 cut(s) 10, 128, 290
MseI TTAA 2 cut(s) 92, 225
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 3 cut(s) 108, 109, 272
MvaI CCWGG 1 cut(s) 272
NciI CCSGG 2 cut(s) 108, 109
NdeII GATC 2 cut(s) 81, 163
NlaIII CATG 3 cut(s) 32, 71, 286
NlaIV GGNNCC 1 cut(s) 309
PkrI GCNGC 4 cut(s) 22, 25, 105, 196
Psp6I CCWGG 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 92, 225
SatI GCNGC 4 cut(s) 21, 24, 104, 195
Sau3AI GATC 2 cut(s) 81, 163
ScrFI CCNGG 3 cut(s) 108, 109, 272
SduI GDGCHC 1 cut(s) 312
SetI ASST 4 cut(s) 28, 139, 257, 282
SfcI CTRYAG 1 cut(s) 96
SmaI CCCGGG 1 cut(s) 109
Sse9I AATT 1 cut(s) 313
SsiI CCGC 2 cut(s) 20, 195
StyD4I CCNGG 3 cut(s) 106, 107, 270
TaaI ACNGT 2 cut(s) 97, 247
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 313
TauI GCSGC 2 cut(s) 23, 197
Tru1I TTAA 2 cut(s) 92, 225
Tru9I TTAA 2 cut(s) 92, 225
TseI GCWGC 2 cut(s) 23, 103
TspMI CCCGGG 1 cut(s) 107
XmaI CCCGGG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.