Rorug01G0239500

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000347
Physical Location & Seq
Reverse (-)
34490783 .. 34493535
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0239500.1

Sequence Viewer

Length: 663 bp
ATGTCTGCTGCTGCCTCTTCCAACACTGTCTTTTCATCACCGGACCACCTCTCCCCCTCCGATCAGCTCTGCTATGTTCACTGCAACTTTTGTGATACTGTTCTCGCGGTAAGCGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACGGTCCGATGCGGCCATTGCAGCAACCTGCTCTCCGTCAACATGCGCGGCCTTCTTCTCCCTGCTGCAGCTAACCAACTTCACCTCGGACATTCTTTCTTCACTCCTCAGAATCTCCTGGAGGAGATCCGAAACGCCCCATCAAACACGTTCTCAAATCAGCCTAACATGATGATGAACGAATCATTTATGCCGATGATTCGAGGAGTTGAGGAGATACCTAAGCCTCCACCTGTTGTTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCCTACAACCGCTTCATCAAGGAAGAGATACAACGTATCAAAGCTGGAAACCCTGATATTAGCCACAGAGAGGCCTTCAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCTCACATCCACTTTGGCCTGATGCCTGATCAACCCGTGAAGAAAGCCAATATTCGCCAGGATGGAGAGGACATGCTCATCAAAGACAATGGATTTTTCAGCGCTCCTGCAAATTTGGGTGTCTCCCCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

220

Amino Acids

24.4

Weight (kDa)

8.24

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YABBY_N PF24868 19 - 70 8.4e-30 YABBY, N-terminal
YABBY PF04690 123 - 182 5.2e-38 YABBY protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 516
AccII CGCG 2 cut(s) 107, 192
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 4 cut(s) 107, 156, 192, 430
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 481
AfeI AGCGCT 1 cut(s) 631
AfiI CCNNNNNNNGG 2 cut(s) 490, 516
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 2 cut(s) 261, 585
AluBI AGCT 3 cut(s) 67, 215, 464
AluI AGCT 3 cut(s) 67, 215, 464
Alw26I GTCTC 2 cut(s) 397, 655
AlwI GGATC 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 631
AoxI GGCC 5 cut(s) 157, 193, 492, 519, 544
ApaI GGGCCC 1 cut(s) 523
ApeKI GCWGC 8 cut(s) 8, 11, 123, 165, 209, 212, 503, 506
ApoI RAATTY 1 cut(s) 640
AspLEI GCGC 2 cut(s) 192, 632
AspS9I GGNCC 4 cut(s) 43, 148, 519, 520
AsuHPI GGTGA 2 cut(s) 30, 218
AvaII GGWCC 2 cut(s) 43, 148
BaeGI GKGCMC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 523
BbvI GCAGC 6 cut(s) 135, 177, 196, 224, 490, 493
BccI CCATC 3 cut(s) 292, 424, 584
BciT130I CCWGG 2 cut(s) 263, 587
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 397, 655
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 263, 587
Bme18I GGWCC 2 cut(s) 43, 148
BmgT120I GGNCC 4 cut(s) 43, 148, 519, 520
BmiI GGNNCC 1 cut(s) 521
BmrFI CCNGG 2 cut(s) 263, 587
BmsI GCATC 2 cut(s) 143, 540
BpmI CTGGAG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 40, 394
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 516
Bse3DI GCAATG 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 263, 587
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 534, 595
BseLI CCNNNNNNNGG 2 cut(s) 490, 516
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 266
BseRI GAGGAG 4 cut(s) 240, 281, 363, 371
BseSI GKGCMC 1 cut(s) 523
BseXI GCAGC 6 cut(s) 135, 177, 196, 224, 490, 493
Bsh1236I CGCG 2 cut(s) 107, 192
BshFI GGCC 5 cut(s) 159, 195, 494, 521, 546
BsiSI CCGG 2 cut(s) 41, 395
BslI CCNNNNNNNGG 2 cut(s) 490, 516
BsmAI GTCTC 2 cut(s) 397, 655
BsnI GGCC 5 cut(s) 159, 195, 494, 521, 546
Bsp120I GGGCCC 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 523
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 3 cut(s) 61, 270, 556
BspACI CCGC 4 cut(s) 107, 156, 192, 430
BspANI GGCC 5 cut(s) 159, 195, 494, 521, 546
BspCNI CTCAG 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 2 cut(s) 107, 192
BspLI GGNNCC 1 cut(s) 521
BspMAI CTGCAG 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 61, 270, 556
Bst2UI CCWGG 2 cut(s) 263, 587
Bst4CI ACNGT 4 cut(s) 28, 100, 142, 148
Bst6I CTCTTC 3 cut(s) 22, 395, 438
BstDEI CTNAG 2 cut(s) 252, 366
BstF5I GGATG 2 cut(s) 534, 595
BstFNI CGCG 2 cut(s) 107, 192
BstH2I RGCGCY 1 cut(s) 633
BstHHI GCGC 2 cut(s) 192, 632
BstKTI GATC 3 cut(s) 64, 273, 559
BstMAI GTCTC 2 cut(s) 397, 655
BstMBI GATC 3 cut(s) 61, 270, 556
BstMWI GCNNNNNNNGC 4 cut(s) 120, 162, 165, 500
BstNI CCWGG 2 cut(s) 263, 587
BstNSI RCATGY 2 cut(s) 190, 604
BstSCI CCNGG 2 cut(s) 261, 585
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 523
BstUI CGCG 2 cut(s) 107, 192
BstV1I GCAGC 6 cut(s) 135, 177, 196, 224, 490, 493
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 5 cut(s) 159, 195, 494, 521, 546
BtsCI GGATG 2 cut(s) 534, 595
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 3 cut(s) 24, 79, 505
BveI ACCTGC 1 cut(s) 180
CfoI GCGC 2 cut(s) 192, 632
Cfr13I GGNCC 4 cut(s) 43, 148, 519, 520
CpoI CGGWCCG 1 cut(s) 148
CspI CGGWCCG 1 cut(s) 148
CviAII CATG 3 cut(s) 187, 313, 601
DdeI CTNAG 2 cut(s) 252, 366
DpnI GATC 3 cut(s) 63, 272, 558
DpnII GATC 3 cut(s) 61, 270, 556
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 22, 395, 438
EarI CTCTTC 3 cut(s) 22, 395, 438
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 43, 148
Eco47III AGCGCT 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 481
EcoRII CCWGG 2 cut(s) 261, 585
EcoT38I GRGCYC 1 cut(s) 523
FaeI CATG 3 cut(s) 190, 316, 604
FaiI YATR 5 cut(s) 75, 188, 314, 335, 602
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FatI CATG 3 cut(s) 186, 312, 600
FbaI TGATCA 1 cut(s) 556
FokI GGATG 2 cut(s) 521, 602
FriOI GRGCYC 1 cut(s) 523
GlaI GCGC 2 cut(s) 191, 631
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 633
HaeIII GGCC 5 cut(s) 159, 195, 494, 521, 546
HapII CCGG 2 cut(s) 41, 395
HhaI GCGC 2 cut(s) 192, 632
Hin1II CATG 3 cut(s) 190, 316, 604
Hin6I GCGC 2 cut(s) 190, 630
HinP1I GCGC 2 cut(s) 190, 630
HincII GTYRAC 2 cut(s) 184, 385
HindII GTYRAC 2 cut(s) 184, 385
HinfI GANTC 3 cut(s) 256, 326, 343
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 2 cut(s) 41, 395
HphI GGTGA 2 cut(s) 30, 218
Hpy166II GTNNAC 3 cut(s) 79, 184, 385
Hpy188I TCNGA 5 cut(s) 61, 152, 233, 255, 275
Hpy188III TCNNGA 2 cut(s) 136, 395
Hpy8I GTNNAC 3 cut(s) 79, 184, 385
HpyAV CCTTC 2 cut(s) 206, 505
HpyCH4III ACNGT 4 cut(s) 28, 100, 142, 148
HpyCH4IV ACGT 2 cut(s) 293, 454
HpyCH4V TGCA 5 cut(s) 84, 123, 165, 212, 638
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 162, 165, 500
HpyF3I CTNAG 2 cut(s) 252, 366
HpySE526I ACGT 2 cut(s) 293, 454
Hsp92II CATG 3 cut(s) 190, 316, 604
HspAI GCGC 2 cut(s) 190, 630
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 556
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 3 cut(s) 61, 270, 556
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 6 cut(s) 135, 177, 196, 224, 490, 493
LweI GCATC 2 cut(s) 143, 540
MaeII ACGT 2 cut(s) 293, 454
MaeIII GTNAC 1 cut(s) 142
MalI GATC 3 cut(s) 63, 272, 558
MboI GATC 3 cut(s) 61, 270, 556
MboII GAAGA 6 cut(s) 9, 191, 235, 412, 455, 580
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 2 cut(s) 514, 640
MmeI TCCRAC 1 cut(s) 45
MroI TCCGGA 1 cut(s) 394
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 2 cut(s) 41, 395
MspR9I CCNGG 2 cut(s) 263, 587
MvaI CCWGG 2 cut(s) 263, 587
MvnI CGCG 2 cut(s) 107, 192
MwoI GCNNNNNNNGC 4 cut(s) 120, 162, 165, 500
NdeII GATC 3 cut(s) 61, 270, 556
NlaIII CATG 3 cut(s) 190, 316, 604
NlaIV GGNNCC 1 cut(s) 521
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 2 cut(s) 190, 604
PceI AGGCCT 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 3 cut(s) 256, 326, 343
PflMI CCANNNNNTGG 1 cut(s) 516
PfoI TCCNGGA 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 261, 585
PspGI CCWGG 2 cut(s) 261, 585
PspN4I GGNNCC 1 cut(s) 521
PspOMI GGGCCC 1 cut(s) 519
PspPI GGNCC 4 cut(s) 43, 148, 519, 520
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 317
Rsr2I CGGWCCG 1 cut(s) 148
RsrII CGGWCCG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 3 cut(s) 61, 270, 556
Sau96I GGNCC 4 cut(s) 43, 148, 519, 520
ScrFI CCNGG 2 cut(s) 263, 587
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 2 cut(s) 143, 540
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 2 cut(s) 43, 148
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 2 cut(s) 514, 640
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 4 cut(s) 107, 156, 192, 430
SspI AATATT 1 cut(s) 580
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 2 cut(s) 261, 585
TaaI ACNGT 4 cut(s) 28, 100, 142, 148
TaiI ACGT 2 cut(s) 296, 457
TaqI TCGA 1 cut(s) 346
TasI AATT 2 cut(s) 514, 640
TauI GCSGC 2 cut(s) 159, 195
TfiI GAWTC 3 cut(s) 256, 326, 343
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 3 cut(s) 31, 86, 505
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 8 cut(s) 8, 11, 123, 165, 209, 212, 503, 506
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 24, 335, 424
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 3 cut(s) 31, 86, 505
Van91I CCANNNNNTGG 1 cut(s) 516
VpaK11BI GGWCC 2 cut(s) 43, 148
XapI RAATTY 1 cut(s) 640
XceI RCATGY 2 cut(s) 190, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.