RLG00000028259

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000347
Physical Location & Seq
Forward (+)
20651814 .. 20654181
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028259

Sequence Viewer

Length: 696 bp
ATGTTCGAGCTCCAACTGAACCAAGGCGCCGTTCTTCTCCGGAAGGCGGTGGCGCCACCCGTCGACATGGCCGCCGACTTCGCCGACGTCGAAATCTCGCTGGAGGAGGTGATCTTGCTGACCGCCGGCAACCCCATCATCTCCTCGGAGGACTTCGTCGTGCTGCGGATTCCGGAATCCACCTTGGCTCGCGTCGTCTGTGACTTTGCCGGATCGTTCGTTCTCAACCTCAGCCGCTTGTATTCCAATCTGAGTCGCGCTGGCGACGACGACGTGCTCACCATTCACGGCGACGATCTGATCGGCTTCGTGACCTTGAATTCCTGGTTGGATTTACCAGAGTTAGATTATGAATATCGAGCCATCATTGGGATGCCTTCAGAGGAGTTTAGACATCTTATCATACATCTGCACTACTTTGGGAATTCTGTTTCTGTACATGCGACCGATACTGAAGTCAAGTTTTCTGCAGTAAATGAGGAGGTTGTTTACAGGACAGAGCTTGGAGAATGTATTATTGGGGGTGTCCAGCATGAACATCCAGTTTCCTTGATCTTCAGTCTCCACGTCCTCAGCGTCATCCTGAACGTGTGTCTTCTGTCAAACATTGTATGGTTGCTCCAGTCTGATGACTTACCTCCCATGCTGAATTACCCTGTTGGTTCAATAGGCAACCTCATGTTTTACTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

232

Amino Acids

25.7

Weight (kDa)

4.46

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCNA_C PF02747 116 - 229 3.4e-10 Proliferating cell nuclear antigen, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccB1I GGYRCC 2 cut(s) 26, 52
AccI GTMKAC 1 cut(s) 63
AccII CGCG 2 cut(s) 192, 258
AccIII TCCGGA 2 cut(s) 39, 172
AciI CCGC 5 cut(s) 47, 72, 123, 166, 235
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 319, 424
AcuI CTGAAG 3 cut(s) 363, 474, 541
AcyI GRCGYC 3 cut(s) 27, 53, 87
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 2 cut(s) 46, 369
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 2 cut(s) 319, 666
AjiI CACGTC 2 cut(s) 274, 568
AjnI CCWGG 1 cut(s) 323
AjuI GAANNNNNNNTTGG 6 cut(s) 15, 47, 311, 343, 501, 533
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 2 cut(s) 10, 502
AluI AGCT 2 cut(s) 10, 502
Alw21I GWGCWC 2 cut(s) 12, 279
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 1 cut(s) 220
Aor13HI TCCGGA 2 cut(s) 39, 172
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 2 cut(s) 319, 424
AspLEI GCGC 3 cut(s) 29, 55, 260
AsuHPI GGTGA 2 cut(s) 121, 271
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanI GGYRCC 2 cut(s) 26, 52
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 587
Bbv12I GWGCWC 2 cut(s) 12, 279
BbvCI CCTCAGC 2 cut(s) 230, 572
BbvI GCAGC 1 cut(s) 150
BccI CCATC 2 cut(s) 143, 371
BceAI ACGGC 2 cut(s) 14, 304
BciT130I CCWGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 2 cut(s) 30, 56
BisI GCNGC 3 cut(s) 72, 164, 235
BlsI GCNGC 3 cut(s) 73, 165, 236
Bme1390I CCNGG 1 cut(s) 325
BmgBI CACGTC 2 cut(s) 274, 568
BmiI GGNNCC 2 cut(s) 28, 54
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 587
BpmI CTGGAG 2 cut(s) 122, 605
Bpu10I CCTNAGC 2 cut(s) 230, 572
BsaHI GRCGYC 3 cut(s) 27, 53, 87
BsaJI CCNNGG 3 cut(s) 22, 144, 183
BsaWI WCCGGW 2 cut(s) 39, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 369
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 542, 622
BseAI TCCGGA 2 cut(s) 39, 172
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 22, 144, 183
BseGI GGATG 3 cut(s) 378, 538, 579
BseLI CCNNNNNNNGG 2 cut(s) 46, 369
BseMII CTCAG 3 cut(s) 242, 244, 586
BseNI ACTGG 2 cut(s) 542, 622
BseRI GAGGAG 4 cut(s) 119, 133, 398, 494
BseXI GCAGC 1 cut(s) 150
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 2 cut(s) 192, 258
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 2 cut(s) 26, 52
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 2 cut(s) 12, 279
BsiSI CCGG 4 cut(s) 40, 126, 173, 210
BslI CCNNNNNNNGG 2 cut(s) 46, 369
BsmAI GTCTC 1 cut(s) 566
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 12, 279
Bsp13I TCCGGA 2 cut(s) 39, 172
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 5 cut(s) 111, 212, 295, 300, 552
BspACI CCGC 5 cut(s) 47, 72, 123, 166, 235
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 3 cut(s) 243, 243, 585
BspEI TCCGGA 2 cut(s) 39, 172
BspFNI CGCG 2 cut(s) 192, 258
BspLI GGNNCC 2 cut(s) 28, 54
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 26, 52
BsrFI RCCGGY 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 436
BsrI ACTGG 2 cut(s) 542, 622
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 22, 144, 183
BssMI GATC 5 cut(s) 111, 212, 295, 300, 552
BssNI GRCGYC 3 cut(s) 27, 53, 87
BssT1I CCWWGG 2 cut(s) 22, 183
Bst2UI CCWGG 1 cut(s) 325
BstACI GRCGYC 3 cut(s) 27, 53, 87
BstAUI TGTACA 1 cut(s) 436
BstC8I GCNNGC 3 cut(s) 127, 190, 262
BstDEI CTNAG 3 cut(s) 230, 251, 572
BstF5I GGATG 3 cut(s) 378, 538, 579
BstFNI CGCG 2 cut(s) 192, 258
BstH2I RGCGCY 2 cut(s) 30, 56
BstHHI GCGC 3 cut(s) 29, 55, 260
BstKTI GATC 5 cut(s) 114, 215, 298, 303, 555
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 5 cut(s) 111, 212, 295, 300, 552
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 2 cut(s) 192, 258
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 587
BsuRI GGCC 1 cut(s) 71
BtrI CACGTC 2 cut(s) 274, 568
BtsCI GGATG 3 cut(s) 378, 538, 579
BtsIMutI CAGTG 1 cut(s) 691
Cac8I GCNNGC 3 cut(s) 127, 190, 262
CfoI GCGC 3 cut(s) 29, 55, 260
Cfr10I RCCGGY 1 cut(s) 125
CseI GACGC 2 cut(s) 181, 565
Csp6I GTAC 1 cut(s) 437
CviAII CATG 5 cut(s) 67, 440, 533, 643, 679
CviJI RGCY 7 cut(s) 10, 71, 188, 234, 306, 362, 502
CviKI_1 RGCY 7 cut(s) 10, 71, 188, 234, 306, 362, 502
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 230, 251, 572
DinI GGCGCC 2 cut(s) 28, 54
DpnI GATC 5 cut(s) 113, 214, 297, 302, 554
DpnII GATC 5 cut(s) 111, 212, 295, 300, 552
EaeI YGGCCR 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 22, 183
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 3 cut(s) 363, 474, 541
EcoICRI GAGCTC 1 cut(s) 10
EcoRI GAATTC 2 cut(s) 319, 424
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 22, 183
EcoT38I GRGCYC 1 cut(s) 12
EgeI GGCGCC 2 cut(s) 28, 54
EheI GGCGCC 2 cut(s) 28, 54
ErhI CCWWGG 2 cut(s) 22, 183
FaeI CATG 5 cut(s) 70, 443, 536, 646, 682
FaiI YATR 8 cut(s) 68, 351, 404, 441, 534, 613, 644, 680
FatI CATG 5 cut(s) 66, 439, 532, 642, 678
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 72, 164, 235
FokI GGATG 3 cut(s) 385, 525, 566
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 3 cut(s) 72, 164, 235
GlaI GCGC 3 cut(s) 28, 54, 259
GluI GCNGC 3 cut(s) 72, 164, 235
GsuI CTGGAG 2 cut(s) 122, 605
HaeII RGCGCY 2 cut(s) 30, 56
HaeIII GGCC 1 cut(s) 71
HapII CCGG 4 cut(s) 40, 126, 173, 210
HgaI GACGC 2 cut(s) 181, 565
HhaI GCGC 3 cut(s) 29, 55, 260
Hin1I GRCGYC 3 cut(s) 27, 53, 87
Hin1II CATG 5 cut(s) 70, 443, 536, 646, 682
Hin6I GCGC 3 cut(s) 27, 53, 258
HinP1I GCGC 3 cut(s) 27, 53, 258
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 3 cut(s) 169, 176, 253
HpaII CCGG 4 cut(s) 40, 126, 173, 210
HphI GGTGA 2 cut(s) 121, 271
Hpy166II GTNNAC 2 cut(s) 64, 490
Hpy188I TCNGA 5 cut(s) 148, 252, 300, 382, 628
Hpy188III TCNNGA 4 cut(s) 40, 173, 310, 583
Hpy8I GTNNAC 2 cut(s) 64, 490
Hpy99I CGWCG 9 cut(s) 65, 89, 92, 161, 197, 269, 272, 275, 296
HpyAV CCTTC 2 cut(s) 37, 387
HpyCH4IV ACGT 4 cut(s) 87, 273, 567, 588
HpyCH4V TGCA 2 cut(s) 412, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 230, 251, 572
HpySE526I ACGT 4 cut(s) 87, 273, 567, 588
Hsp92I GRCGYC 3 cut(s) 27, 53, 87
Hsp92II CATG 5 cut(s) 70, 443, 536, 646, 682
HspAI GCGC 3 cut(s) 27, 53, 258
KasI GGCGCC 2 cut(s) 26, 52
Kpn2I TCCGGA 2 cut(s) 39, 172
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 5 cut(s) 111, 212, 295, 300, 552
LmnI GCTCC 2 cut(s) 15, 624
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 363
MaeII ACGT 4 cut(s) 87, 273, 567, 588
MaeIII GTNAC 2 cut(s) 200, 310
MalI GATC 5 cut(s) 113, 214, 297, 302, 554
MboI GATC 5 cut(s) 111, 212, 295, 300, 552
MboII GAAGA 3 cut(s) 26, 547, 587
MhlI GDGCHC 2 cut(s) 12, 279
MluCI AATT 3 cut(s) 319, 424, 649
Mly113I GGCGCC 2 cut(s) 27, 53
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 37, 309
MroI TCCGGA 2 cut(s) 39, 172
MroNI GCCGGC 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 4 cut(s) 40, 126, 173, 210
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
MvnI CGCG 2 cut(s) 192, 258
MwoI GCNNNNNNNGC 1 cut(s) 80
NaeI GCCGGC 1 cut(s) 127
NarI GGCGCC 2 cut(s) 27, 53
NdeII GATC 5 cut(s) 111, 212, 295, 300, 552
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 5 cut(s) 70, 443, 536, 646, 682
NlaIV GGNNCC 2 cut(s) 28, 54
NmuCI GTSAC 2 cut(s) 200, 310
NspI RCATGY 1 cut(s) 443
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 573
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 169, 176
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 73, 165, 236
PleI GAGTC 1 cut(s) 261
PluTI GGCGCC 2 cut(s) 30, 56
PpsI GAGTC 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 28, 54
PstI CTGCAG 1 cut(s) 472
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 12
SalI GTCGAC 1 cut(s) 62
SatI GCNGC 3 cut(s) 72, 164, 235
Sau3AI GATC 5 cut(s) 111, 212, 295, 300, 552
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 2 cut(s) 12, 279
SfaNI GCATC 1 cut(s) 363
SfcI CTRYAG 1 cut(s) 468
SfoI GGCGCC 2 cut(s) 28, 54
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 3 cut(s) 319, 424, 649
SsiI CCGC 5 cut(s) 47, 72, 123, 166, 235
SspDI GGCGCC 2 cut(s) 26, 52
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 2 cut(s) 22, 183
TaiI ACGT 4 cut(s) 90, 276, 570, 591
TaqI TCGA 4 cut(s) 6, 63, 90, 358
TaqII GACCGA 1 cut(s) 461
TasI AATT 3 cut(s) 319, 424, 649
TatI WGTACW 1 cut(s) 436
TauI GCSGC 2 cut(s) 74, 237
TfiI GAWTC 2 cut(s) 169, 176
TseFI GTSAC 2 cut(s) 200, 310
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 2 cut(s) 200, 310
TspDTI ATGAA 2 cut(s) 366, 549
Tth111I GACNNNGTC 1 cut(s) 155
XapI RAATTY 2 cut(s) 319, 424
XceI RCATGY 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 63
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.