RchiOBHm_Chr1g0331901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000347
Physical Location & Seq
Forward (+)
22919272 .. 22921249
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56086

Sequence Viewer

Length: 210 bp
ATGGGTTTGAAGGCTGAGAGATACCAGATTCTGCGTGAAAGGGGTCAATATCCATTTTTGTTGGAATTTGGTCTCCATCAAAAGAGTGCATTCCTGAATGCGGCGAGTTTATCAGACAGAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTAGAGGTACCTGTTAATGGACTCGGTAGCATCCTGTTTTGTTCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.9

Weight (kDa)

9.62

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 139
AciI CCGC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 3 cut(s) 100, 139, 173
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 102, 128
BlsI GCNGC 2 cut(s) 103, 129
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 139, 173
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 100, 139, 173
BseMII CTCAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 100, 139, 173
BsmAI GTCTC 1 cut(s) 77
BsmI GAATGC 2 cut(s) 89, 103
Bso31I GGTCTC 1 cut(s) 77
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 31
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 4 cut(s) 14, 127, 136, 205
CviKI_1 RGCY 4 cut(s) 14, 127, 136, 205
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 102, 128
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 102, 128
FspBI CTAG 1 cut(s) 201
GluI GCNGC 2 cut(s) 102, 128
HinfI GANTC 2 cut(s) 28, 177
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 89, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 15
KpnI GGTACC 1 cut(s) 167
LpnPI CCDG 5 cut(s) 38, 107, 146, 180, 203
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 201
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 1 cut(s) 154
MseI TTAA 1 cut(s) 171
Mva1269I GAATGC 2 cut(s) 89, 103
MwoI GCNNNNNNNGC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 165
PctI GAATGC 2 cut(s) 89, 103
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 2 cut(s) 103, 129
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 31
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 102, 128
SchI GAGTC 1 cut(s) 171
SetI ASST 3 cut(s) 138, 165, 169
SfaNI GCATC 1 cut(s) 195
SgeI CNNG 8 cut(s) 37, 47, 106, 117, 145, 179, 191, 202
Sse9I AATT 1 cut(s) 65
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 154
TasI AATT 1 cut(s) 65
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 127
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 65
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.