RLG00000028248

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000347
Physical Location & Seq
Forward (+)
20542476 .. 20543805
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028248

Sequence Viewer

Length: 633 bp
ATGTTCCTCGCCGGACACATACGCGACGCCGGCCACCTCTGCATGTCGCCGGACGGGATTCTTCTGATCTGCACAACCTCTTTCCCGCCTCATCTTGACGCCTATCTACAACTGCCTCTCGCAACCTTCTTCGCCTTTCGCTGCCGCAAGGAGCGCGTGCTGGACCTCCACCTCCGCCTCTTGGAGAACCGAATCAACAGGGATGCTGTTGCCGTGCACAGCTCTGAGATGGCGCTCATTTCCTCATATCGGGGTTCTTTGGCGGGATTGGATTGGTCAGATTACAGTTATATAGTGAGCATTGAGATGCCGGCCCAGATTTTTAGGGAACTTATCAATTCTCTGAGCTTTTATGGGTTTGAAGTTCATGCCGATGTGACAGGGACTCGAATTATGTTTCGTGTAGTCAATAAAGTGGTTATTCTGGAGGAAGGGGCTGAGAGATACCGGATTCTGCGTGAGAGGGGTCAATATCCATTTTTGTTGGAATTTGGTCTCCATCAAAAGAGTGCATTCCTGAATGCGGCGAGTTTATCAGACAGAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTGGATTTACCTGTTAATGGACTCGGTAGCATCATGTTTTGTTCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

211

Amino Acids

23.93

Weight (kDa)

7.09

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 562
AccII CGCG 2 cut(s) 24, 156
AciI CCGC 5 cut(s) 86, 145, 175, 263, 524
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 488
AcyI GRCGYC 2 cut(s) 27, 99
AfiI CCNNNNNNNGG 5 cut(s) 181, 249, 523, 562, 596
AgsI TTSAA 1 cut(s) 362
AluBI AGCT 3 cut(s) 222, 348, 559
AluI AGCT 3 cut(s) 222, 348, 559
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 215
AoxI GGCC 2 cut(s) 31, 312
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 141, 550
ApoI RAATTY 1 cut(s) 488
AspLEI GCGC 2 cut(s) 156, 235
AspS9I GGNCC 2 cut(s) 163, 313
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 128, 537
BccI CCATC 2 cut(s) 223, 507
BceAI ACGGC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 4 cut(s) 142, 145, 525, 551
BlsI GCNGC 4 cut(s) 143, 146, 526, 552
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 313
BmsI GCATC 3 cut(s) 193, 297, 618
BpmI CTGGAG 1 cut(s) 446
BsaHI GRCGYC 2 cut(s) 27, 99
BsaI GGTCTC 1 cut(s) 500
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 249, 523, 562, 596
Bse118I RCCGGY 2 cut(s) 29, 310
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 5 cut(s) 181, 249, 523, 562, 596
BseMII CTCAG 3 cut(s) 216, 335, 429
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 128, 537
BsgI GTGCAG 2 cut(s) 55, 536
Bsh1236I CGCG 2 cut(s) 24, 156
BshFI GGCC 2 cut(s) 33, 314
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 5 cut(s) 12, 30, 50, 311, 448
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 5 cut(s) 181, 249, 523, 562, 596
BsmAI GTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 397
BsmI GAATGC 2 cut(s) 512, 526
BsnI GGCC 2 cut(s) 33, 314
Bso31I GGTCTC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 5 cut(s) 86, 145, 175, 263, 524
BspANI GGCC 2 cut(s) 33, 314
BspCNI CTCAG 3 cut(s) 217, 336, 430
BspFNI CGCG 2 cut(s) 24, 156
BspTNI GGTCTC 1 cut(s) 500
BsrFI RCCGGY 2 cut(s) 29, 310
BssAI RCCGGY 2 cut(s) 29, 310
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 2 cut(s) 27, 99
Bst4CI ACNGT 2 cut(s) 287, 577
BstACI GRCGYC 2 cut(s) 27, 99
BstC8I GCNNGC 3 cut(s) 31, 158, 312
BstDEI CTNAG 3 cut(s) 225, 344, 438
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 2 cut(s) 24, 156
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 2 cut(s) 156, 235
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 30, 39, 153, 556
BstNSI RCATGY 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 2 cut(s) 24, 156
BstV1I GCAGC 2 cut(s) 128, 537
BsuRI GGCC 2 cut(s) 33, 314
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 3 cut(s) 31, 158, 312
CfoI GCGC 2 cut(s) 156, 235
Cfr10I RCCGGY 2 cut(s) 29, 310
Cfr13I GGNCC 2 cut(s) 163, 313
CseI GACGC 2 cut(s) 35, 107
CviAII CATG 3 cut(s) 43, 368, 613
CviJI RGCY 8 cut(s) 33, 222, 314, 348, 437, 550, 559, 628
CviKI_1 RGCY 8 cut(s) 33, 222, 314, 348, 437, 550, 559, 628
DdeI CTNAG 3 cut(s) 225, 344, 438
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 31
EciI GGCGGA 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 163
FaeI CATG 3 cut(s) 46, 371, 616
FaiI YATR 9 cut(s) 20, 44, 247, 291, 293, 354, 369, 395, 614
FaqI GGGAC 1 cut(s) 397
FatI CATG 3 cut(s) 42, 367, 612
FauI CCCGC 2 cut(s) 93, 256
Fnu4HI GCNGC 4 cut(s) 142, 145, 525, 551
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 4 cut(s) 142, 145, 525, 551
FspBI CTAG 1 cut(s) 624
GlaI GCGC 2 cut(s) 155, 234
GluI GCNGC 4 cut(s) 142, 145, 525, 551
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 2 cut(s) 33, 314
HapII CCGG 5 cut(s) 12, 30, 50, 311, 448
HgaI GACGC 2 cut(s) 35, 107
HhaI GCGC 2 cut(s) 156, 235
Hin1I GRCGYC 2 cut(s) 27, 99
Hin1II CATG 3 cut(s) 46, 371, 616
Hin6I GCGC 2 cut(s) 154, 233
HinP1I GCGC 2 cut(s) 154, 233
HinfI GANTC 5 cut(s) 58, 192, 385, 451, 600
HpaII CCGG 5 cut(s) 12, 30, 50, 311, 448
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 5 cut(s) 66, 226, 280, 345, 538
Hpy188III TCNNGA 3 cut(s) 95, 425, 517
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 136, 425
HpyCH4III ACNGT 2 cut(s) 287, 577
HpyCH4V TGCA 5 cut(s) 42, 72, 217, 512, 553
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 39, 153, 556
HpyF3I CTNAG 3 cut(s) 225, 344, 438
Hsp92I GRCGYC 2 cut(s) 27, 99
Hsp92II CATG 3 cut(s) 46, 371, 616
HspAI GCGC 2 cut(s) 154, 233
KroI GCCGGC 2 cut(s) 29, 310
KroNI GCCGGC 2 cut(s) 31, 312
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 2 cut(s) 128, 537
LweI GCATC 3 cut(s) 193, 297, 618
MaeI CTAG 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 53, 121
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 3 cut(s) 337, 390, 488
MlyI GAGTC 2 cut(s) 379, 594
MmeI TCCRAC 2 cut(s) 465, 561
MroNI GCCGGC 2 cut(s) 29, 310
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 2 cut(s) 305, 372
MspI CCGG 5 cut(s) 12, 30, 50, 311, 448
Mva1269I GAATGC 2 cut(s) 512, 526
MvnI CGCG 2 cut(s) 24, 156
MwoI GCNNNNNNNGC 4 cut(s) 30, 39, 153, 556
NaeI GCCGGC 2 cut(s) 31, 312
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 2 cut(s) 29, 310
NlaIII CATG 3 cut(s) 46, 371, 616
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 1 cut(s) 46
PctI GAATGC 2 cut(s) 512, 526
PdiI GCCGGC 2 cut(s) 31, 312
PfeI GAWTC 3 cut(s) 58, 192, 451
PflMI CCANNNNNTGG 1 cut(s) 562
PkrI GCNGC 4 cut(s) 143, 146, 526, 552
PleI GAGTC 2 cut(s) 379, 594
PpsI GAGTC 2 cut(s) 379, 594
PspPI GGNCC 2 cut(s) 163, 313
RseI CAYNNNNRTG 2 cut(s) 305, 372
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 4 cut(s) 142, 145, 525, 551
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 163, 313
SchI GAGTC 2 cut(s) 379, 594
SduI GDGCHC 1 cut(s) 219
SetI ASST 9 cut(s) 39, 80, 128, 168, 174, 224, 350, 561, 592
SfaNI GCATC 3 cut(s) 193, 297, 618
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 305, 372
Sse9I AATT 3 cut(s) 337, 390, 488
SsiI CCGC 5 cut(s) 86, 145, 175, 263, 524
SspMI CTAG 1 cut(s) 624
TaaI ACNGT 2 cut(s) 287, 577
TaqI TCGA 1 cut(s) 388
TasI AATT 3 cut(s) 337, 390, 488
TauI GCSGC 2 cut(s) 147, 527
TfiI GAWTC 3 cut(s) 58, 192, 451
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 141, 550
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 356
TspRI CASTG 1 cut(s) 580
Van91I CCANNNNNTGG 1 cut(s) 562
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 488
XceI RCATGY 1 cut(s) 46
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.