Rh1CG233400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Reverse (-)
49035580 .. 49035831
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG233400.1

Sequence Viewer

Length: 252 bp
ATGCCGCGATGGTTTGAGCTCAACCTTGATCGCCGCAAAGCGATTTCGCTGAAGGAGGCCGTTGGAGCCATGGCTCAAGTAGCCTTAACCGACATAGAGCTCGTCAGCCGTCCCCAAAAGACCGACCTCTGCGTCACTCTGGAGATCATTGCACTGGTTTCCAGAACCCAGGCTACTGATGCCGTCAGCATGCTGCTGATGCCGAAACCGTTGATGTCTAGCTTCGAGTGCTCCGAAAGCCGGAATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.28

Weight (kDa)

6.19

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 5, 34
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 240
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 19, 100, 222
AluI AGCT 3 cut(s) 19, 100, 222
Alw21I GWGCWC 3 cut(s) 21, 102, 233
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 193
BanII GRGCYC 2 cut(s) 21, 102
Bbv12I GWGCWC 3 cut(s) 21, 102, 233
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 3
BceAI ACGGC 3 cut(s) 44, 93, 167
BciT130I CCWGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 3 cut(s) 5, 34, 194
BlsI GCNGC 3 cut(s) 6, 35, 195
Bme1390I CCNGG 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 169, 189
BpmI CTGGAG 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 69, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 69, 168
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 3 cut(s) 21, 102, 233
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 21, 102, 233
Bsp143I GATC 2 cut(s) 28, 144
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 2 cut(s) 5, 34
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 69, 168
BssMI GATC 2 cut(s) 28, 144
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 2 cut(s) 31, 147
BstMBI GATC 2 cut(s) 28, 144
BstMWI GCNNNNNNNGC 6 cut(s) 65, 80, 179, 199, 228, 237
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 191
CseI GACGC 1 cut(s) 121
CviAII CATG 2 cut(s) 70, 190
DpnI GATC 2 cut(s) 30, 146
DpnII GATC 2 cut(s) 28, 144
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 21, 102
Eco53kI GAGCTC 2 cut(s) 19, 100
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 21, 102
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 73, 193
FaiI YATR 3 cut(s) 71, 95, 191
FaqI GGGAC 1 cut(s) 96
FatI CATG 2 cut(s) 69, 189
Fnu4HI GCNGC 3 cut(s) 5, 34, 194
FriOI GRGCYC 2 cut(s) 21, 102
Fsp4HI GCNGC 3 cut(s) 5, 34, 194
FspBI CTAG 1 cut(s) 219
GluI GCNGC 3 cut(s) 5, 34, 194
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 241
HgaI GACGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 73, 193
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 140, 162
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 80, 179, 199, 228, 237
Hsp92II CATG 2 cut(s) 73, 193
Kzo9I GATC 2 cut(s) 28, 144
LmnI GCTCC 2 cut(s) 65, 236
LpnPI CCDG 5 cut(s) 125, 140, 155, 175, 182
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 169, 189
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 30, 146
MboI GATC 2 cut(s) 28, 144
MhlI GDGCHC 3 cut(s) 21, 102, 233
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 2 cut(s) 49, 137
MseI TTAA 1 cut(s) 86
MspI CCGG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 6 cut(s) 65, 80, 179, 199, 228, 237
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 28, 144
NlaIII CATG 2 cut(s) 73, 193
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 3 cut(s) 6, 35, 195
Psp124BI GAGCTC 2 cut(s) 21, 102
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 67
PsrI GAACNNNNNNTAC 2 cut(s) 157, 189
SacI GAGCTC 2 cut(s) 21, 102
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 5, 34, 194
Sau3AI GATC 2 cut(s) 28, 144
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 3 cut(s) 21, 102, 233
SetI ASST 5 cut(s) 21, 27, 102, 129, 224
SfaNI GCATC 2 cut(s) 169, 189
SfcI CTRYAG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SphI GCATGC 1 cut(s) 193
SsiI CCGC 2 cut(s) 5, 34
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 225
TaqII GACCGA 1 cut(s) 137
TauI GCSGC 2 cut(s) 7, 36
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 159
XceI RCATGY 1 cut(s) 193
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.