Prupe.2G163600_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21373968 .. 21376529
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163600.1

Sequence Viewer

Length: 768 bp
ATGTATCACTTTAGCCTGGACCCAACTGGTTTTCTTCTAAGGCAGGCGGTGTCAACCGTCATGCAGGCGCAGAAGGGCGCGCGCTATTGTGATCTCTGCGTCTCACCAAACGGCGTCACATTTGGAATAAGCGTAATAGATCCCAGTACCGGAATCCCAAACATTTACTTCACCCTGCCGATGGAACCTTTGAACTTCTACACAATTCGCTGCCGAGGGATCCTCTATCTTAAAGTGGACATCCGTAATATGCACGACCAACTCCTTGAGGCCACCGCTTATGATTTTCTCAGTCTCTCTGGTCATGTCACCCTTGGTCACATAGACTTTGAGCTCGTCGATGCCAGAACTAAGCAAATCAGGGCCACTGAAATTTCAGTGATTTCAAGCAAATATGGTCGGATAGCTATACCTCGGCTCTTTCGTGAATATCAAGTGATCGTCGGGATACCTGCGGAGACGTTTAGGATTATGATCATCAATCTGCACCATATTGGATTTCAAGCTTATGCAGAAGTAAGAGAGAATGTTGTTTTTCTTGGAGTAGGTGACCAGGCGGTTACTCTCCCGAAGGACGAAAGATGTATTATTGAGGGTGATGTGGGGATCTTGCTGTTCAGTATCGAAAATATTAAGCCACTGTTGAGCGCTTCAATTCTGTCGAAGATGGTGTGGTTGCTTGGCCAGTCCGGGGGTCCATATGCCGCGCTGAATTTCCCTTTTGGTAAACTTGGCAACATGTTGTTTTACTTTGGCCCTGTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

256

Amino Acids

28.5

Weight (kDa)

6.59

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 460
AccII CGCG 3 cut(s) 80, 82, 707
AciI CCGC 5 cut(s) 47, 276, 455, 557, 705
AclWI GGATC 4 cut(s) 134, 214, 227, 614
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 2 cut(s) 372, 712
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 148
AfeI AGCGCT 1 cut(s) 649
AfiI CCNNNNNNNGG 3 cut(s) 149, 181, 691
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 4 cut(s) 193, 387, 503, 654
AjnI CCWGG 2 cut(s) 15, 552
AluBI AGCT 3 cut(s) 334, 407, 506
AluI AGCT 3 cut(s) 334, 407, 506
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 3 cut(s) 106, 299, 452
AlwI GGATC 4 cut(s) 134, 214, 227, 614
Aor51HI AGCGCT 1 cut(s) 649
AoxI GGCC 4 cut(s) 270, 363, 682, 754
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 2 cut(s) 372, 712
AspLEI GCGC 6 cut(s) 70, 80, 82, 84, 650, 709
AspS9I GGNCC 4 cut(s) 19, 363, 695, 755
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 5 cut(s) 96, 163, 301, 560, 608
AvaII GGWCC 2 cut(s) 19, 695
BalI TGGCCA 1 cut(s) 684
BamHI GGATCC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 197
BccI CCATC 2 cut(s) 175, 661
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 17, 554
BciVI GTATCC 1 cut(s) 441
BclI TGATCA 1 cut(s) 474
BcnI CCSGG 1 cut(s) 691
BcoDI GTCTC 3 cut(s) 106, 299, 452
BfoI RGCGCY 1 cut(s) 651
BfuAI ACCTGC 1 cut(s) 460
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 2 cut(s) 211, 705
BlsI GCNGC 2 cut(s) 212, 706
Bme1390I CCNGG 3 cut(s) 17, 554, 691
Bme18I GGWCC 2 cut(s) 19, 695
BmgT120I GGNCC 4 cut(s) 19, 363, 695, 755
BmiI GGNNCC 4 cut(s) 21, 186, 221, 696
BmrFI CCNGG 3 cut(s) 17, 554, 691
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 207, 239
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 691
BsaBI GATNNNNATC 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 4 cut(s) 214, 313, 413, 690
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 181, 691
Bse1I ACTGG 3 cut(s) 31, 144, 685
Bse8I GATNNNNATC 1 cut(s) 473
BseBI CCWGG 2 cut(s) 17, 554
BseDI CCNNGG 4 cut(s) 214, 313, 413, 690
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 473
BseLI CCNNNNNNNGG 3 cut(s) 149, 181, 691
BseMII CTCAG 1 cut(s) 304
BseNI ACTGG 3 cut(s) 31, 144, 685
BsePI GCGCGC 2 cut(s) 78, 80
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 470
Bsh1236I CGCG 3 cut(s) 80, 82, 707
BshFI GGCC 4 cut(s) 272, 365, 684, 756
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 150, 690
BslI CCNNNNNNNGG 3 cut(s) 149, 181, 691
BsmAI GTCTC 3 cut(s) 106, 299, 452
BsmBI CGTCTC 2 cut(s) 106, 452
BsnI GGCC 4 cut(s) 272, 365, 684, 756
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 6 cut(s) 91, 139, 219, 438, 474, 606
BspACI CCGC 5 cut(s) 47, 276, 455, 557, 705
BspANI GGCC 4 cut(s) 272, 365, 684, 756
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 3 cut(s) 80, 82, 707
BspLI GGNNCC 4 cut(s) 21, 186, 221, 696
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 4 cut(s) 134, 214, 227, 614
BsrI ACTGG 3 cut(s) 31, 144, 685
BssECI CCNNGG 4 cut(s) 214, 313, 413, 690
BssHII GCGCGC 2 cut(s) 78, 80
BssMI GATC 6 cut(s) 91, 139, 219, 438, 474, 606
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 2 cut(s) 17, 554
Bst4CI ACNGT 2 cut(s) 58, 642
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 4 cut(s) 45, 66, 80, 82
BstDEI CTNAG 3 cut(s) 38, 290, 351
BstEII GGTNACC 1 cut(s) 548
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 3 cut(s) 80, 82, 707
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 6 cut(s) 70, 80, 82, 84, 650, 709
BstKTI GATC 6 cut(s) 94, 142, 222, 441, 477, 609
BstMAI GTCTC 3 cut(s) 106, 299, 452
BstMBI GATC 6 cut(s) 91, 139, 219, 438, 474, 606
BstNI CCWGG 2 cut(s) 17, 554
BstNSI RCATGY 1 cut(s) 742
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 3 cut(s) 15, 552, 689
BstUI CGCG 3 cut(s) 80, 82, 707
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 3 cut(s) 139, 219, 606
BstYI RGATCY 3 cut(s) 139, 219, 606
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 4 cut(s) 272, 365, 684, 756
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 3 cut(s) 366, 384, 638
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 4 cut(s) 45, 66, 80, 82
CfoI GCGC 6 cut(s) 70, 80, 82, 84, 650, 709
Cfr13I GGNCC 4 cut(s) 19, 363, 695, 755
CseI GACGC 2 cut(s) 88, 103
Csp6I GTAC 1 cut(s) 147
CviAII CATG 3 cut(s) 61, 305, 739
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 3 cut(s) 38, 290, 351
DpnI GATC 6 cut(s) 93, 141, 221, 440, 476, 608
DpnII GATC 6 cut(s) 91, 139, 219, 438, 474, 606
EaeI YGGCCR 1 cut(s) 682
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 19, 695
Eco47III AGCGCT 1 cut(s) 649
Eco53kI GAGCTC 1 cut(s) 334
Eco91I GGTNACC 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 15, 552
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 313
Esp3I CGTCTC 2 cut(s) 106, 452
FaeI CATG 3 cut(s) 64, 308, 742
FatI CATG 3 cut(s) 60, 304, 738
FauNDI CATATG 1 cut(s) 700
FbaI TGATCA 1 cut(s) 474
Fnu4HI GCNGC 2 cut(s) 211, 705
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 211, 705
GlaI GCGC 6 cut(s) 69, 79, 81, 83, 649, 708
GluI GCNGC 2 cut(s) 211, 705
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 4 cut(s) 272, 365, 684, 756
HapII CCGG 2 cut(s) 150, 690
HgaI GACGC 2 cut(s) 88, 103
HhaI GCGC 6 cut(s) 70, 80, 82, 84, 650, 709
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 3 cut(s) 64, 308, 742
Hin6I GCGC 6 cut(s) 68, 78, 80, 82, 648, 707
HinP1I GCGC 6 cut(s) 68, 78, 80, 82, 648, 707
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 1 cut(s) 153
HpaII CCGG 2 cut(s) 150, 690
HphI GGTGA 5 cut(s) 96, 163, 301, 560, 608
Hpy166II GTNNAC 3 cut(s) 54, 238, 728
Hpy188I TCNGA 2 cut(s) 402, 767
Hpy188III TCNNGA 3 cut(s) 425, 445, 568
Hpy8I GTNNAC 3 cut(s) 54, 238, 728
Hpy99I CGWCG 2 cut(s) 341, 446
HpyAV CCTTC 2 cut(s) 67, 565
HpyCH4III ACNGT 2 cut(s) 58, 642
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 4 cut(s) 64, 253, 487, 512
HpyF3I CTNAG 3 cut(s) 38, 290, 351
HpySE526I ACGT 1 cut(s) 461
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 3 cut(s) 64, 308, 742
HspAI GCGC 6 cut(s) 68, 78, 80, 82, 648, 707
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 6 cut(s) 91, 139, 219, 438, 474, 606
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 331
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 5 cut(s) 115, 307, 317, 548, 559
MalI GATC 6 cut(s) 93, 141, 221, 440, 476, 608
MboI GATC 6 cut(s) 91, 139, 219, 438, 474, 606
MboII GAAGA 2 cut(s) 26, 676
MflI RGATCY 3 cut(s) 139, 219, 606
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 4 cut(s) 204, 372, 654, 712
MluNI TGGCCA 1 cut(s) 684
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 5 cut(s) 209, 233, 262, 423, 586
Mox20I TGGCCA 1 cut(s) 684
MscI TGGCCA 1 cut(s) 684
MseI TTAA 2 cut(s) 231, 633
Msp20I TGGCCA 1 cut(s) 684
MspI CCGG 2 cut(s) 150, 690
MspR9I CCNGG 3 cut(s) 17, 554, 691
MvaI CCWGG 2 cut(s) 17, 554
MvnI CGCG 3 cut(s) 80, 82, 707
NciI CCSGG 1 cut(s) 691
NdeI CATATG 1 cut(s) 700
NdeII GATC 6 cut(s) 91, 139, 219, 438, 474, 606
NlaIII CATG 3 cut(s) 64, 308, 742
NlaIV GGNNCC 4 cut(s) 21, 186, 221, 696
NmeAIII GCCGAG 2 cut(s) 239, 394
NmuCI GTSAC 4 cut(s) 115, 307, 317, 548
NspI RCATGY 1 cut(s) 742
PauI GCGCGC 2 cut(s) 78, 80
PciI ACATGT 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 2 cut(s) 212, 706
PscI ACATGT 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 15, 552
PspEI GGTNACC 1 cut(s) 548
PspGI CCWGG 2 cut(s) 15, 552
PspN4I GGNNCC 4 cut(s) 21, 186, 221, 696
PspPI GGNCC 4 cut(s) 19, 363, 695, 755
PsuI RGATCY 3 cut(s) 139, 219, 606
PteI GCGCGC 2 cut(s) 78, 80
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 231, 633
SatI GCNGC 2 cut(s) 211, 705
Sau3AI GATC 6 cut(s) 91, 139, 219, 438, 474, 606
Sau96I GGNCC 4 cut(s) 19, 363, 695, 755
ScrFI CCNGG 3 cut(s) 17, 554, 691
SduI GDGCHC 1 cut(s) 336
SetI ASST 8 cut(s) 190, 336, 409, 415, 454, 464, 508, 550
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 2 cut(s) 19, 695
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 4 cut(s) 204, 372, 654, 712
SsiI CCGC 5 cut(s) 47, 276, 455, 557, 705
SspI AATATT 1 cut(s) 631
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 3 cut(s) 15, 552, 689
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 58, 642
TaiI ACGT 1 cut(s) 464
TaqI TCGA 3 cut(s) 339, 624, 662
TasI AATT 4 cut(s) 204, 372, 654, 712
TauI GCSGC 1 cut(s) 707
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 231, 633
Tru9I TTAA 2 cut(s) 231, 633
TscAI CASTG 3 cut(s) 373, 384, 645
TseFI GTSAC 4 cut(s) 115, 307, 317, 548
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 4 cut(s) 115, 307, 317, 548
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 373, 384, 645
VpaK11BI GGWCC 2 cut(s) 19, 695
XapI RAATTY 2 cut(s) 372, 712
XceI RCATGY 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.