pycom07g13980

in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
15827267 .. 15829203
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13980.2

Sequence Viewer

Length: 756 bp
ATGTTTGGATTCAGCCTAGAAGCAGGTGCTGTTCTTCTGAGGAAGGCCGTGGCTGCCTTCATCATGACAGGCTGCTTCAACGGCGAAATGTTCATCTCGAATGACCACGTCACTCTGGCAGCGACCACATTTCCCATCCCACTGTTCCAAATCCCAAGCCTCCTCGTATCCCTTCGATTGCGACCTCTCATCGGGGAGGACTTATACTGCACCGAAGGCCTCCTCTGGCTTGCCCTCAGCTTTCGTGACTTCTATAACAATCTCAGTCTTTATGAGGAGGACGATGATTTTTTTGGCATCTATGGCAGTGCAGACCTTCGTCGCATCAGATTTGTGCTCGTCAATAACAGAACTGAGAGGTTTTGGGAACAGCAAATGGACTTGTTTACAATCGAACATGGTCGGATGATCGCACCTGAGTTCCACTATGAATATGATGTGGTCGTTGGAATACCTTCGGGCATATTTGGAAGTCTCATCATGAATCTAAGCCGTTTCGGGATGAAAGAATCTCAATTTCCTGATCATAAAATGTATCTTTGTTTTCATTTCGGGCAGCTGGAGGAGTGTATTATTGGGGGTGCTGTGGGCGAAAATCCAGTTTCCTTGGTGTTCCATATCCATTACAATACCACAATGCTGCGCTCTTCATTTTTGTCAAAAAGGGTGTGGTTGCTCGGCCAGTCCAATGGTTCATCTGTCATGCTCAATTGCCCTGTTGGAAATCTTGGTAACCTCATGTTCTACGTTGGCTGA

Protein Analysis

252

Amino Acids

28.52

Weight (kDa)

5.32

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 679
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 79
AjiI CACGTC 1 cut(s) 109
AluBI AGCT 2 cut(s) 240, 559
AluI AGCT 2 cut(s) 240, 559
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 3 cut(s) 45, 217, 679
ApeKI GCWGC 5 cut(s) 53, 72, 119, 556, 640
Asp700I GAANNNNTTC 1 cut(s) 454
AspLEI GCGC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 5 cut(s) 40, 59, 131, 568, 627
BccI CCATC 1 cut(s) 143
BceAI ACGGC 3 cut(s) 32, 97, 477
BciVI GTATCC 1 cut(s) 178
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 14
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 5 cut(s) 54, 73, 120, 557, 641
BlsI GCNGC 5 cut(s) 55, 74, 121, 558, 642
BmgBI CACGTC 1 cut(s) 109
BmsI GCATC 2 cut(s) 306, 333
BoxI GACNNNNGTC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 48, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 599, 682
BseDI CCNNGG 2 cut(s) 48, 606
BseGI GGATG 3 cut(s) 135, 411, 507
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 5 cut(s) 29, 250, 277, 345, 408
BseNI ACTGG 2 cut(s) 599, 682
BseRI GAGGAG 4 cut(s) 152, 212, 290, 578
BseXI GCAGC 5 cut(s) 40, 59, 131, 568, 627
BsgI GTGCAG 2 cut(s) 193, 330
BshFI GGCC 3 cut(s) 47, 219, 681
BsiHKAI GWGCWC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 479
BsnI GGCC 3 cut(s) 47, 219, 681
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 408, 523
BspANI GGCC 3 cut(s) 47, 219, 681
BspCNI CTCAG 5 cut(s) 30, 249, 276, 346, 409
BspHI TCATGA 2 cut(s) 63, 480
BspMI ACCTGC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 652
BsrI ACTGG 2 cut(s) 599, 682
BssECI CCNNGG 2 cut(s) 48, 606
BssMI GATC 2 cut(s) 408, 523
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 6 cut(s) 38, 236, 263, 354, 417, 488
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 731
BstF5I GGATG 3 cut(s) 135, 411, 507
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 2 cut(s) 411, 526
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 2 cut(s) 408, 523
BstMWI GCNNNNNNNGC 4 cut(s) 53, 81, 216, 303
BstPAI GACNNNNGTC 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 731
BstV1I GCAGC 5 cut(s) 40, 59, 131, 568, 627
BstXI CCANNNNNNTGG 1 cut(s) 689
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 3 cut(s) 47, 219, 681
BtgI CCRYGG 1 cut(s) 48
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 3 cut(s) 135, 411, 507
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 140, 313
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 2 cut(s) 63, 480
CfoI GCGC 1 cut(s) 645
CviAII CATG 5 cut(s) 64, 398, 481, 703, 739
DdeI CTNAG 6 cut(s) 38, 236, 263, 354, 417, 488
DpnI GATC 2 cut(s) 410, 525
DpnII GATC 2 cut(s) 408, 523
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 5 cut(s) 67, 401, 484, 706, 742
FatI CATG 5 cut(s) 63, 397, 480, 702, 738
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 5 cut(s) 54, 73, 120, 557, 641
FokI GGATG 3 cut(s) 122, 418, 514
Fsp4HI GCNGC 5 cut(s) 54, 73, 120, 557, 641
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 644
GluI GCNGC 5 cut(s) 54, 73, 120, 557, 641
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 3 cut(s) 47, 219, 681
HhaI GCGC 1 cut(s) 645
Hin1II CATG 5 cut(s) 67, 401, 484, 706, 742
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HinfI GANTC 3 cut(s) 9, 484, 509
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 3 cut(s) 39, 329, 405
Hpy188III TCNNGA 6 cut(s) 64, 97, 245, 481, 499, 521
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 6 cut(s) 37, 67, 182, 209, 326, 465
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 2 cut(s) 108, 747
HpyCH4V TGCA 2 cut(s) 210, 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 81, 216, 303
HpyF3I CTNAG 6 cut(s) 38, 236, 263, 354, 417, 488
HpySE526I ACGT 2 cut(s) 108, 747
Hsp92II CATG 5 cut(s) 67, 401, 484, 706, 742
HspAI GCGC 1 cut(s) 643
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 408, 523
LguI GCTCTTC 1 cut(s) 652
Lsp1109I GCAGC 5 cut(s) 40, 59, 131, 568, 627
LweI GCATC 2 cut(s) 306, 333
MaeI CTAG 1 cut(s) 17
MaeII ACGT 2 cut(s) 108, 747
MaeIII GTNAC 3 cut(s) 109, 245, 731
MalI GATC 2 cut(s) 410, 525
MboI GATC 2 cut(s) 408, 523
MboII GAAGA 2 cut(s) 26, 639
MfeI CAATTG 1 cut(s) 709
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 2 cut(s) 515, 709
MmeI TCCRAC 3 cut(s) 383, 427, 700
MroXI GAANNNNTTC 1 cut(s) 454
MspA1I CMGCKG 1 cut(s) 559
MunI CAATTG 1 cut(s) 709
MwoI GCNNNNNNNGC 4 cut(s) 53, 81, 216, 303
NdeII GATC 2 cut(s) 408, 523
NlaIII CATG 5 cut(s) 67, 401, 484, 706, 742
NmeAIII GCCGAG 1 cut(s) 657
NmuCI GTSAC 2 cut(s) 109, 245
PagI TCATGA 2 cut(s) 63, 480
PaqCI CACCTGC 1 cut(s) 14
PceI AGGCCT 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 3 cut(s) 9, 484, 509
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 55, 74, 121, 558, 642
PshAI GACNNNNGTC 1 cut(s) 318
PspEI GGTNACC 1 cut(s) 731
PstNI CAGNNNCTG 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 652
SatI GCNGC 5 cut(s) 54, 73, 120, 557, 641
Sau3AI GATC 2 cut(s) 408, 523
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 2 cut(s) 306, 333
Sse9I AATT 2 cut(s) 515, 709
SseBI AGGCCT 1 cut(s) 219
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 1 cut(s) 219
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 2 cut(s) 111, 750
TaqI TCGA 3 cut(s) 98, 175, 393
TasI AATT 2 cut(s) 515, 709
TfiI GAWTC 3 cut(s) 9, 484, 509
TscAI CASTG 2 cut(s) 147, 313
TseFI GTSAC 2 cut(s) 109, 245
TseI GCWGC 5 cut(s) 53, 72, 119, 556, 640
Tsp45I GTSAC 2 cut(s) 109, 245
TspDTI ATGAA 8 cut(s) 49, 82, 444, 497, 518, 536, 639, 684
TspRI CASTG 2 cut(s) 147, 313
Tth111I GACNNNGTC 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.