Prupe.2G163700_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21378021 .. 21381110
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163700.1

Sequence Viewer

Length: 822 bp
ATGTTTCAGTTTACCCTTGACCCATGTGCTTCCTATCTAAGGCACGCGCTTTCATGCTTCATGCTGCTGGGCCCCGACCACTATGTCGAGCTCTGCGTCACAGAAAACGACGTCACATTGGTAGGAGCCGTAGGTGACCCTGAGGAAGGACGCACGCCTGAAATCCCAAACGTCGTCTTAGCCCTGCAGTTGACACCTTCCAACTTCTACACTTTTAGCTGCACTGAGAACGTCCGCCTTGGCTTGGACTACTATATGCTGTTCAGGGAACTCTTTGATGCCAAGGGTGGTGATTTTCTCAGTCTCTCTAGTGATATCAGCCGCGATAACATTGACTTTGAGCTCCTCAGTGTCTCAACTCTGGAAATGAAGGTTGCTGAAATTCCATTGCTTTCAAGGAGGTCTGGTCAGATAACTTTACCTCAGCTCCAAAAAGAACGTCCAGTGGTCATTGGGATAGCTGCGGAGCTGTTTAGGGTTCTTATCCTCAGTTCGCGAGAACGATTTGGGATGACAGTTACTGTAAGCGTAATGGGTAAGCAAGTTGTACTTCATGGACAAGATAAGGCGATTGTTCTCAGGAAGGAGGATTGTGTTATTTGGATTCCTGTGGCGGGTCGATTTTTCTTGAAGTTCAGTACCGAGAATGCTAACGCACTGCTGAATGCTTCAATTCTGTCAAACATGGTGTGGTTGTATGGCCAGTGCAATGGTCCATCTTGCATGCTGAATTTCCCTTTTGGTCAACTTGGAAGCCTAACGTTTTACTTTGGCGAAGATAATGCGGGCTCAGAAGATGATGCGGGTTTTCACAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

274

Amino Acids

30.43

Weight (kDa)

4.9

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 114
AccII CGCG 3 cut(s) 47, 324, 496
AciI CCGC 6 cut(s) 235, 322, 464, 614, 785, 803
AclI AACGTT 1 cut(s) 761
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 2 cut(s) 381, 730
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 2 cut(s) 549, 640
AfiI CCNNNNNNNGG 4 cut(s) 39, 146, 244, 614
AgsI TTSAA 3 cut(s) 396, 631, 672
AluBI AGCT 6 cut(s) 91, 219, 343, 427, 461, 469
AluI AGCT 6 cut(s) 91, 219, 343, 427, 461, 469
Alw21I GWGCWC 2 cut(s) 93, 345
Alw26I GTCTC 2 cut(s) 308, 358
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 2 cut(s) 70, 700
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 3 cut(s) 64, 219, 461
ApoI RAATTY 2 cut(s) 381, 730
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 70, 71, 713
AsuHPI GGTGA 2 cut(s) 146, 302
AvaII GGWCC 1 cut(s) 713
AxyI CCTNAGG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 74
BalI TGGCCA 1 cut(s) 702
BanII GRGCYC 4 cut(s) 74, 93, 345, 791
Bbv12I GWGCWC 2 cut(s) 93, 345
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 51, 206, 448
BccI CCATC 1 cut(s) 724
BceAI ACGGC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BcoDI GTCTC 2 cut(s) 308, 358
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 185
BisI GCNGC 4 cut(s) 65, 220, 322, 462
BlsI GCNGC 4 cut(s) 66, 221, 323, 463
Bme18I GGWCC 1 cut(s) 713
BmgT120I GGNCC 3 cut(s) 70, 71, 713
BmiI GGNNCC 3 cut(s) 72, 73, 127
BmsI GCATC 2 cut(s) 268, 790
Bpu10I CCTNAGC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 238, 282
BsaXI ACNNNNNCTCC 4 cut(s) 391, 411, 421, 441
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 146, 244, 614
Bse1I ACTGG 2 cut(s) 443, 703
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 2 cut(s) 386, 715
BseDI CCNNGG 2 cut(s) 238, 282
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 4 cut(s) 39, 146, 244, 614
BseMI GCAATG 2 cut(s) 386, 715
BseMII CTCAG 8 cut(s) 132, 216, 313, 361, 437, 502, 592, 804
BseNI ACTGG 2 cut(s) 443, 703
BseRI GAGGAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 3 cut(s) 51, 206, 448
BseYI CCCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 3 cut(s) 47, 324, 496
BshFI GGCC 2 cut(s) 72, 702
BsiHKAI GWGCWC 2 cut(s) 93, 345
BslI CCNNNNNNNGG 4 cut(s) 39, 146, 244, 614
BsmAI GTCTC 2 cut(s) 308, 358
BsmI GAATGC 2 cut(s) 652, 670
BsnI GGCC 2 cut(s) 72, 702
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 4 cut(s) 74, 93, 345, 791
Bsp68I TCGCGA 1 cut(s) 496
BspACI CCGC 6 cut(s) 235, 322, 464, 614, 785, 803
BspANI GGCC 2 cut(s) 72, 702
BspCNI CTCAG 8 cut(s) 133, 217, 312, 360, 436, 501, 591, 803
BspFNI CGCG 3 cut(s) 47, 324, 496
BspLI GGNNCC 3 cut(s) 72, 73, 127
BspMAI CTGCAG 1 cut(s) 189
BsrDI GCAATG 2 cut(s) 386, 715
BsrI ACTGG 2 cut(s) 443, 703
BssECI CCNNGG 2 cut(s) 238, 282
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 238, 282
Bst4CI ACNGT 2 cut(s) 517, 523
BstACI GRCGYC 1 cut(s) 111
BstC8I GCNNGC 4 cut(s) 45, 155, 725, 787
BstEII GGTNACC 1 cut(s) 134
BstENI CCTNNNNNAGG 2 cut(s) 37, 144
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 3 cut(s) 47, 324, 496
BstHHI GCGC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 308, 358
BstNSI RCATGY 1 cut(s) 727
BstPI GGTNACC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 185
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 3 cut(s) 47, 324, 496
BstV1I GCAGC 3 cut(s) 51, 206, 448
BstXI CCANNNNNNTGG 1 cut(s) 710
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 72, 702
BtsCI GGATG 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 656
BtsIMutI CAGTG 5 cut(s) 222, 355, 450, 656, 710
BtuMI TCGCGA 1 cut(s) 496
Cac8I GCNNGC 4 cut(s) 45, 155, 725, 787
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 3 cut(s) 70, 71, 713
CseI GACGC 2 cut(s) 85, 159
Csp6I GTAC 2 cut(s) 548, 639
CviAII CATG 6 cut(s) 24, 54, 61, 554, 685, 724
CviQI GTAC 2 cut(s) 548, 639
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 700
EciI GGCGGA 1 cut(s) 224
Ecl136II GAGCTC 2 cut(s) 91, 343
Eco130I CCWWGG 2 cut(s) 238, 282
Eco24I GRGCYC 4 cut(s) 74, 93, 345, 791
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 713
Eco53kI GAGCTC 2 cut(s) 91, 343
Eco81I CCTNAGG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 134
EcoICRI GAGCTC 2 cut(s) 91, 343
EcoNI CCTNNNNNAGG 2 cut(s) 37, 144
EcoO109I RGGNCCY 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 134
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 238, 282
EcoT38I GRGCYC 4 cut(s) 74, 93, 345, 791
ErhI CCWWGG 2 cut(s) 238, 282
FaeI CATG 6 cut(s) 27, 57, 64, 557, 688, 727
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 6 cut(s) 23, 53, 60, 553, 684, 723
FauI CCCGC 3 cut(s) 607, 778, 796
Fnu4HI GCNGC 4 cut(s) 65, 220, 322, 462
FokI GGATG 1 cut(s) 523
FriOI GRGCYC 4 cut(s) 74, 93, 345, 791
Fsp4HI GCNGC 4 cut(s) 65, 220, 322, 462
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 48
GluI GCNGC 4 cut(s) 65, 220, 322, 462
GsaI CCCAGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 72, 702
HgaI GACGC 2 cut(s) 85, 159
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 6 cut(s) 27, 57, 64, 557, 688, 727
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 2 cut(s) 192, 746
HindII GTYRAC 2 cut(s) 192, 746
HinfI GANTC 1 cut(s) 604
HphI GGTGA 2 cut(s) 146, 302
Hpy166II GTNNAC 3 cut(s) 12, 192, 746
Hpy188I TCNGA 2 cut(s) 411, 793
Hpy188III TCNNGA 4 cut(s) 362, 495, 580, 628
Hpy8I GTNNAC 3 cut(s) 12, 192, 746
Hpy99I CGWCG 2 cut(s) 113, 176
HpyAV CCTTC 4 cut(s) 140, 207, 364, 577
HpyCH4III ACNGT 2 cut(s) 517, 523
HpyCH4IV ACGT 5 cut(s) 111, 171, 231, 439, 761
HpyCH4V TGCA 4 cut(s) 187, 222, 708, 723
HpySE526I ACGT 5 cut(s) 111, 171, 231, 439, 761
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 6 cut(s) 27, 57, 64, 557, 688, 727
HspAI GCGC 1 cut(s) 47
LmnI GCTCC 4 cut(s) 125, 348, 432, 466
Lsp1109I GCAGC 3 cut(s) 51, 206, 448
LweI GCATC 2 cut(s) 268, 790
MaeI CTAG 1 cut(s) 309
MaeII ACGT 5 cut(s) 111, 171, 231, 439, 761
MaeIII GTNAC 4 cut(s) 97, 112, 134, 517
MboII GAAGA 2 cut(s) 788, 806
MhlI GDGCHC 4 cut(s) 74, 93, 345, 791
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 3 cut(s) 381, 672, 730
MluNI TGGCCA 1 cut(s) 702
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 136, 356, 393, 432, 497, 580
Mox20I TGGCCA 1 cut(s) 702
MscI TGGCCA 1 cut(s) 702
Msp20I TGGCCA 1 cut(s) 702
Mva1269I GAATGC 2 cut(s) 652, 670
MvnI CGCG 3 cut(s) 47, 324, 496
NlaIII CATG 6 cut(s) 27, 57, 64, 557, 688, 727
NlaIV GGNNCC 3 cut(s) 72, 73, 127
NmuCI GTSAC 3 cut(s) 97, 112, 134
NruI TCGCGA 1 cut(s) 496
NspI RCATGY 1 cut(s) 727
PaeI GCATGC 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 2 cut(s) 652, 670
PfeI GAWTC 1 cut(s) 604
PkrI GCNGC 4 cut(s) 66, 221, 323, 463
Psp124BI GAGCTC 2 cut(s) 93, 345
Psp1406I AACGTT 1 cut(s) 761
PspEI GGTNACC 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 72, 73, 127
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 3 cut(s) 70, 71, 713
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 521
RruI TCGCGA 1 cut(s) 496
RsaI GTAC 2 cut(s) 549, 640
RsaNI GTAC 2 cut(s) 548, 639
SacI GAGCTC 2 cut(s) 93, 345
SatI GCNGC 4 cut(s) 65, 220, 322, 462
Sau96I GGNCC 3 cut(s) 70, 71, 713
SduI GDGCHC 4 cut(s) 74, 93, 345, 791
SfaNI GCATC 2 cut(s) 268, 790
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 713
SphI GCATGC 1 cut(s) 727
Sse9I AATT 3 cut(s) 381, 672, 730
SsiI CCGC 6 cut(s) 235, 322, 464, 614, 785, 803
SspMI CTAG 1 cut(s) 309
SstI GAGCTC 2 cut(s) 93, 345
StyI CCWWGG 2 cut(s) 238, 282
TaaI ACNGT 2 cut(s) 517, 523
TaiI ACGT 5 cut(s) 114, 174, 234, 442, 764
TaqI TCGA 2 cut(s) 87, 619
TasI AATT 3 cut(s) 381, 672, 730
TatI WGTACW 1 cut(s) 547
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 604
TscAI CASTG 5 cut(s) 229, 355, 450, 663, 710
TseFI GTSAC 3 cut(s) 97, 112, 134
TseI GCWGC 3 cut(s) 64, 219, 461
Tsp45I GTSAC 3 cut(s) 97, 112, 134
TspDTI ATGAA 4 cut(s) 42, 49, 383, 542
TspRI CASTG 5 cut(s) 229, 355, 450, 663, 710
VpaK11BI GGWCC 1 cut(s) 713
XagI CCTNNNNNAGG 2 cut(s) 37, 144
XapI RAATTY 2 cut(s) 381, 730
XceI RCATGY 1 cut(s) 727
XspI CTAG 1 cut(s) 309
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.