Rh1BG221500

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000347
Physical Location & Seq
Forward (+)
34104076 .. 34107415
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG221500.1

Sequence Viewer

Length: 843 bp
ATGTCACGGTGGTTTGAGCTCAAGCTTGATTTTCCTGAAGCTATTCTGCTCAAGAAAGCTGTAAGAGTCTTCACTCAGGTAGCCTATTCAGACCGAGAGCTCCCCACTTCCATGTTCAACAATGTCATCCCCAACAACGCCGACCTCCACTTATCTCCGACCATGGTCCTACTGGTCTCTACAAACTCGCATTTTCGGTTTCCGGAAATGACCACTGTGCTGGCGATGAAGCCGCCCTGCTCCTCCGTGTCGAGATTGTGGTGCTCCAAGAGCTGCCGCACGCTGTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAACACTGAGGATTCGGTTACTCTTTATGGTGATGAGGCAGCTGTTGATAGGATTTTCTATGAGATTGGGGATGATGACGGCATCAAATACTCCTCTACGCTGCCAGTGATTTCATTGCGGGATCAGATTCAGATGGACCCAGGGTTCGTAGGATATGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTCATGCCTTTATCACTCAATCGGATTCTCATGGGTTTAAAGTTCATGCCAGAGTGTCACAAACCCAAGTTGTGCTCCGGGTGGTGAATAACGAGATGGTCTTCAGACCAGAGCCCGGGGTTTGCGAGATTGAGAGTGATGGAGGTAGATATCCATTTGTGTTGAAGTTTGATCTCCAGCACAAGAGAGCGTTTCTCAATGCTGCTATGCTGTCAGAGATGGTATGGATACTTAACTCTGCGGAGTTGATCACCGTGCTGAGCTTCCCTATTGTTGGCCTGGGTAACCTCATGTTTACCCAACTGAACCCTGTGGCGCCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

280

Amino Acids

31.7

Weight (kDa)

5.99

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 832
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 4 cut(s) 233, 277, 442, 758
AclWI GGATC 1 cut(s) 453
AcuI CTGAAG 3 cut(s) 57, 492, 604
AcyI GRCGYC 1 cut(s) 833
AdeI CACNNNGTG 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 632, 791
AgsI TTSAA 3 cut(s) 118, 307, 682
AjnI CCWGG 2 cut(s) 463, 795
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 8 cut(s) 19, 25, 41, 59, 100, 273, 365, 780
AluI AGCT 8 cut(s) 19, 25, 41, 59, 100, 273, 365, 780
Alw21I GWGCWC 4 cut(s) 21, 102, 266, 594
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 632
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 793
ApeKI GCWGC 4 cut(s) 273, 362, 424, 719
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 2 cut(s) 166, 460
AsuC2I CCSGG 3 cut(s) 596, 633, 634
AsuHPI GGTGA 3 cut(s) 365, 613, 760
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 2 cut(s) 166, 460
BanI GGYRCC 1 cut(s) 832
BanII GRGCYC 3 cut(s) 21, 102, 633
BbsI GAAGAC 3 cut(s) 61, 498, 610
Bbv12I GWGCWC 4 cut(s) 21, 102, 266, 594
BbvI GCAGC 4 cut(s) 260, 374, 411, 706
BccI CCATC 4 cut(s) 451, 607, 650, 730
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 2 cut(s) 465, 797
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 1 cut(s) 765
BcnI CCSGG 3 cut(s) 596, 633, 634
BcoDI GTCTC 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 836
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 6 cut(s) 233, 274, 277, 363, 425, 720
BlpI GCTNAGC 1 cut(s) 776
BlsI GCNGC 6 cut(s) 234, 275, 278, 364, 426, 721
Bme1390I CCNGG 5 cut(s) 465, 596, 633, 634, 797
Bme18I GGWCC 2 cut(s) 166, 460
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 166, 460
BmiI GGNNCC 2 cut(s) 462, 834
BmrFI CCNGG 5 cut(s) 465, 596, 633, 634, 797
BmsI GCATC 1 cut(s) 414
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 3 cut(s) 61, 498, 610
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BpmI CTGGAG 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 776
BpuEI CTTGAG 2 cut(s) 5, 35
BpuMI CCSGG 3 cut(s) 596, 633, 634
BsaHI GRCGYC 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 6 cut(s) 162, 463, 464, 632, 633, 796
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 791
Bse1I ACTGG 3 cut(s) 177, 321, 428
Bse3DI GCAATG 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 465, 797
BseDI CCNNGG 6 cut(s) 162, 463, 464, 632, 633, 796
BseGI GGATG 2 cut(s) 126, 400
BseLI CCNNNNNNNGG 2 cut(s) 632, 791
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 89, 321, 767
BseNI ACTGG 3 cut(s) 177, 321, 428
BseRI GAGGAG 2 cut(s) 232, 406
BseXI GCAGC 4 cut(s) 260, 374, 411, 706
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 1 cut(s) 795
BshNI GGYRCC 1 cut(s) 832
BsiHKAI GWGCWC 4 cut(s) 21, 102, 266, 594
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 3 cut(s) 203, 595, 633
BslI CCNNNNNNNGG 2 cut(s) 632, 791
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 795
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 5 cut(s) 21, 102, 266, 594, 633
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 3 cut(s) 445, 688, 765
Bsp1720I GCTNAGC 1 cut(s) 776
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 4 cut(s) 233, 277, 442, 758
BspANI GGCC 1 cut(s) 795
BspCNI CTCAG 3 cut(s) 88, 322, 768
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 462, 834
BspPI GGATC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 832
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 3 cut(s) 177, 321, 428
BssECI CCNNGG 6 cut(s) 162, 463, 464, 632, 633, 796
BssMI GATC 3 cut(s) 445, 688, 765
BssNI GRCGYC 1 cut(s) 833
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 465, 797
Bst4CI ACNGT 3 cut(s) 9, 217, 772
BstACI GRCGYC 1 cut(s) 833
BstC8I GCNNGC 2 cut(s) 222, 281
BstDEI CTNAG 3 cut(s) 75, 330, 776
BstDSI CCRYGG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 800
BstF5I GGATG 2 cut(s) 126, 400
BstH2I RGCGCY 1 cut(s) 836
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 3 cut(s) 448, 691, 768
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 445, 688, 765
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 2 cut(s) 465, 797
BstPAI GACNNNNGTC 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 5 cut(s) 463, 594, 631, 632, 795
BstV1I GCAGC 4 cut(s) 260, 374, 411, 706
BstV2I GAAGAC 3 cut(s) 61, 498, 610
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 1 cut(s) 795
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 126, 400
BtsIMutI CAGTG 3 cut(s) 213, 327, 435
Cac8I GCNNGC 2 cut(s) 222, 281
CfoI GCGC 1 cut(s) 835
Cfr13I GGNCC 2 cut(s) 166, 460
Cfr9I CCCGGG 1 cut(s) 632
CviAII CATG 6 cut(s) 112, 163, 521, 548, 563, 808
DdeI CTNAG 3 cut(s) 75, 330, 776
DinI GGCGCC 1 cut(s) 834
DpnI GATC 3 cut(s) 447, 690, 767
DpnII GATC 3 cut(s) 445, 688, 765
DraI TTTAAA 1 cut(s) 556
DraIII CACNNNGTG 1 cut(s) 285
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 3 cut(s) 21, 102, 633
Eco31I GGTCTC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 668
Eco47I GGWCC 2 cut(s) 166, 460
Eco53kI GAGCTC 2 cut(s) 19, 100
Eco57I CTGAAG 3 cut(s) 57, 492, 604
Eco88I CYCGRG 1 cut(s) 632
Eco91I GGTNACC 1 cut(s) 800
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoO65I GGTNACC 1 cut(s) 800
EcoRII CCWGG 2 cut(s) 463, 795
EcoRV GATATC 1 cut(s) 668
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 3 cut(s) 21, 102, 633
EgeI GGCGCC 1 cut(s) 834
EheI GGCGCC 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 6 cut(s) 115, 166, 524, 551, 566, 811
FatI CATG 6 cut(s) 111, 162, 520, 547, 562, 807
FauI CCCGC 1 cut(s) 435
FbaI TGATCA 1 cut(s) 765
Fnu4HI GCNGC 6 cut(s) 233, 274, 277, 363, 425, 720
FokI GGATG 2 cut(s) 113, 407
FriOI GRGCYC 3 cut(s) 21, 102, 633
Fsp4HI GCNGC 6 cut(s) 233, 274, 277, 363, 425, 720
GlaI GCGC 1 cut(s) 834
GluI GCNGC 6 cut(s) 233, 274, 277, 363, 425, 720
GsuI CTGGAG 1 cut(s) 677
HaeII RGCGCY 1 cut(s) 836
HaeIII GGCC 1 cut(s) 795
HapII CCGG 3 cut(s) 203, 595, 633
HhaI GCGC 1 cut(s) 835
Hin1I GRCGYC 1 cut(s) 833
Hin1II CATG 6 cut(s) 115, 166, 524, 551, 566, 811
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 4 cut(s) 66, 335, 451, 542
HpaII CCGG 3 cut(s) 203, 595, 633
HphI GGTGA 3 cut(s) 365, 613, 760
Hpy166II GTNNAC 1 cut(s) 813
Hpy188I TCNGA 8 cut(s) 91, 159, 450, 456, 511, 541, 623, 733
Hpy188III TCNNGA 4 cut(s) 35, 52, 203, 252
Hpy8I GTNNAC 1 cut(s) 813
HpyCH4III ACNGT 3 cut(s) 9, 217, 772
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 3 cut(s) 75, 330, 776
Hsp92I GRCGYC 1 cut(s) 833
Hsp92II CATG 6 cut(s) 115, 166, 524, 551, 566, 811
HspAI GCGC 1 cut(s) 833
KasI GGCGCC 1 cut(s) 832
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 765
Kzo9I GATC 3 cut(s) 445, 688, 765
LmnI GCTCC 4 cut(s) 105, 245, 269, 597
Lsp1109I GCAGC 4 cut(s) 260, 374, 411, 706
LweI GCATC 1 cut(s) 414
MaeIII GTNAC 4 cut(s) 3, 340, 573, 800
MalI GATC 3 cut(s) 447, 690, 767
MboI GATC 3 cut(s) 445, 688, 765
MboII GAAGA 3 cut(s) 61, 498, 610
MhlI GDGCHC 5 cut(s) 21, 102, 266, 594, 633
MluCI AATT 1 cut(s) 838
Mly113I GGCGCC 1 cut(s) 833
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 8 cut(s) 155, 253, 325, 352, 427, 486, 653, 815
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 555, 750
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 3 cut(s) 203, 595, 633
MspR9I CCNGG 5 cut(s) 465, 596, 633, 634, 797
MvaI CCWGG 2 cut(s) 465, 797
MwoI GCNNNNNNNGC 1 cut(s) 270
NarI GGCGCC 1 cut(s) 833
NciI CCSGG 3 cut(s) 596, 633, 634
NcoI CCATGG 1 cut(s) 162
NdeII GATC 3 cut(s) 445, 688, 765
NlaIII CATG 6 cut(s) 115, 166, 524, 551, 566, 811
NlaIV GGNNCC 2 cut(s) 462, 834
NmuCI GTSAC 2 cut(s) 3, 573
PasI CCCWGGG 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 335, 451, 542
PkrI GCNGC 6 cut(s) 234, 275, 278, 364, 426, 721
PleI GAGTC 1 cut(s) 74
PluTI GGCGCC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 21, 102
Psp6I CCWGG 2 cut(s) 463, 795
PspEI GGTNACC 1 cut(s) 800
PspGI CCWGG 2 cut(s) 463, 795
PspN4I GGNNCC 2 cut(s) 462, 834
PspPI GGNCC 2 cut(s) 166, 460
PvuII CAGCTG 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 2 cut(s) 21, 102
SaqAI TTAA 2 cut(s) 555, 750
SatI GCNGC 6 cut(s) 233, 274, 277, 363, 425, 720
Sau3AI GATC 3 cut(s) 445, 688, 765
Sau96I GGNCC 2 cut(s) 166, 460
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 5 cut(s) 465, 596, 633, 634, 797
SduI GDGCHC 5 cut(s) 21, 102, 266, 594, 633
SfaNI GCATC 1 cut(s) 414
SfoI GGCGCC 1 cut(s) 834
SinI GGWCC 2 cut(s) 166, 460
SmaI CCCGGG 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 20, 50
SmoI CTYRAG 2 cut(s) 20, 50
Sse9I AATT 1 cut(s) 838
SsiI CCGC 4 cut(s) 233, 277, 442, 758
SspDI GGCGCC 1 cut(s) 832
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 5 cut(s) 463, 594, 631, 632, 795
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 9, 217, 772
TaqI TCGA 1 cut(s) 251
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 838
TauI GCSGC 2 cut(s) 235, 279
TfiI GAWTC 3 cut(s) 335, 451, 542
Tru1I TTAA 2 cut(s) 555, 750
Tru9I TTAA 2 cut(s) 555, 750
TscAI CASTG 3 cut(s) 220, 334, 435
TseFI GTSAC 2 cut(s) 3, 573
TseI GCWGC 4 cut(s) 273, 362, 424, 719
Tsp45I GTSAC 2 cut(s) 3, 573
TspDTI ATGAA 5 cut(s) 242, 426, 495, 509, 551
TspGWI ACGGA 1 cut(s) 235
TspMI CCCGGG 1 cut(s) 632
TspRI CASTG 3 cut(s) 220, 334, 435
VpaK11BI GGWCC 2 cut(s) 166, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmaI CCCGGG 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.