Prupe.2G163200_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21357151 .. 21359234
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163200.1

Sequence Viewer

Length: 771 bp
ATGTTTGAAATTACCCTGAACCCATGTGCTCTTCTTCTAAGGCAGGCAGTGATACCCTTCATTCGGATGCGCACCTACCATGGCGAGCTCTACATCGCACAGAACGTTGTCACATTGAGAGAAGCCTCAGGTAGCGTTGTCTTATTCCTGCAGATGAAACCTCGGATGTTCCACACCTTTTCCTGCACTGAGAACCTCTGCCTTGGCTTCGACATCCGTCACTTGTACCGCTATCTCCTTCTCCTTCAAGACAGAAATGATGCCTTTCTCCGTCTCACTGGCGATGCCAGTGGTCACATTGACTTTGTGCTCCTCGATATCAGAACTCGGCGAACCATTCAACTTCACATTCCATTGCTTTCAAGGCCAAGTGCGATGACGACTGTACCTCAGCTCCAATATCAATATCAAGTAAGGGTGGGGATACCTGTGCAGCAGTTTAGGGTTATTATCTTGACGCTGTCCCAGTTCGGGGTCACAGTTTCTGCAACCGTAACAGATACTCAAGTTCAGTTCTTTGTAGGAAATGGAAATGGGGGGATGTTCACATTTCCTATTCTCAAGAAGCCGGAGCAGTGTATTATTGAGGGTGATGTGGCGGCAAATCCAGTTTCCTTGGTGCTCGATCTCCGTCACGCTAGTACAATCCTGAATGCTTCAATGATGTCAAAGACGGTGTGGTTGTTTTGCCAGTCCCATGGTTCATCTGTCATGCTGAATTGCCCTTTTGGTAGACTTGGTAACATCTATTATTACTTTCCTGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

257

Amino Acids

29.04

Weight (kDa)

8.97

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 71
AccI GTMKAC 1 cut(s) 733
AciI CCGC 2 cut(s) 229, 599
AclI AACGTT 1 cut(s) 105
AfaI GTAC 3 cut(s) 227, 387, 643
AfiI CCNNNNNNNGG 3 cut(s) 63, 471, 472
AgsI TTSAA 5 cut(s) 8, 248, 341, 363, 660
AluBI AGCT 2 cut(s) 88, 394
AluI AGCT 2 cut(s) 88, 394
Alw21I GWGCWC 4 cut(s) 31, 90, 312, 624
Alw26I GTCTC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 433
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 602
AxyI CCTNAGG 1 cut(s) 127
BaeI ACNNNNGTAYC 4 cut(s) 369, 402, 492, 525
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 4 cut(s) 31, 90, 312, 624
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 445
BciVI GTATCC 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 417
BisI GCNGC 2 cut(s) 434, 600
BlsI GCNGC 2 cut(s) 435, 601
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 57, 250, 274
BmuI ACTGGG 1 cut(s) 460
BoxI GACNNNNGTC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 489, 545
BsaJI CCNNGG 5 cut(s) 79, 161, 202, 615, 697
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 471, 472
Bse1I ACTGG 5 cut(s) 283, 288, 466, 608, 691
Bse21I CCTNAGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 353
BseDI CCNNGG 5 cut(s) 79, 161, 202, 615, 697
BseGI GGATG 4 cut(s) 72, 171, 213, 546
BseLI CCNNNNNNNGG 3 cut(s) 63, 471, 472
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 3 cut(s) 141, 180, 404
BseNI ACTGG 5 cut(s) 283, 288, 466, 608, 691
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 445
BsgI GTGCAG 2 cut(s) 169, 452
BshFI GGCC 1 cut(s) 367
BsiHKAI GWGCWC 4 cut(s) 31, 90, 312, 624
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 2 cut(s) 448, 679
BslI CCNNNNNNNGG 3 cut(s) 63, 471, 472
BsmAI GTCTC 1 cut(s) 278
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 448, 679
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 4 cut(s) 31, 90, 312, 624
Bsp143I GATC 1 cut(s) 625
Bsp19I CCATGG 2 cut(s) 79, 697
BspACI CCGC 2 cut(s) 229, 599
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 3 cut(s) 140, 181, 403
BspMAI CTGCAG 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 353
BsrI ACTGG 5 cut(s) 283, 288, 466, 608, 691
BssECI CCNNGG 5 cut(s) 79, 161, 202, 615, 697
BssMI GATC 1 cut(s) 625
BssT1I CCWWGG 4 cut(s) 79, 202, 615, 697
Bst4CI ACNGT 4 cut(s) 385, 481, 493, 676
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 45, 86
BstDEI CTNAG 4 cut(s) 38, 127, 189, 390
BstDSI CCRYGG 2 cut(s) 79, 697
BstF5I GGATG 4 cut(s) 72, 171, 213, 546
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 1 cut(s) 628
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 625
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstPAI GACNNNNGTC 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 698
Bsu36I CCTNAGG 1 cut(s) 127
BsuI GTATCC 1 cut(s) 417
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 2 cut(s) 79, 697
BtgZI GCGATG 3 cut(s) 79, 297, 389
BtsCI GGATG 4 cut(s) 72, 171, 213, 546
BtsI GCAGTG 2 cut(s) 54, 581
BtsIMutI CAGTG 5 cut(s) 54, 186, 276, 295, 581
Cac8I GCNNGC 2 cut(s) 45, 86
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 1 cut(s) 72
CseI GACGC 1 cut(s) 466
Csp6I GTAC 3 cut(s) 226, 386, 642
CviAII CATG 4 cut(s) 24, 80, 698, 712
CviJI RGCY 7 cut(s) 88, 125, 207, 367, 394, 568, 767
CviKI_1 RGCY 7 cut(s) 88, 125, 207, 367, 394, 568, 767
CviQI GTAC 3 cut(s) 226, 386, 642
DdeI CTNAG 4 cut(s) 38, 127, 189, 390
DpnI GATC 1 cut(s) 627
DpnII GATC 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 4 cut(s) 79, 202, 615, 697
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 88
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 4 cut(s) 79, 202, 615, 697
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 4 cut(s) 79, 202, 615, 697
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 4 cut(s) 27, 83, 701, 715
FaiI YATR 4 cut(s) 25, 81, 699, 713
FaqI GGGAC 2 cut(s) 448, 679
FatI CATG 4 cut(s) 23, 79, 697, 711
FblI GTMKAC 1 cut(s) 733
Fnu4HI GCNGC 2 cut(s) 434, 600
FokI GGATG 4 cut(s) 79, 178, 200, 553
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 434, 600
FspAI RTGCGCAY 1 cut(s) 71
FspBI CTAG 1 cut(s) 639
FspI TGCGCA 1 cut(s) 71
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 434, 600
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 569
HgaI GACGC 1 cut(s) 466
HhaI GCGC 1 cut(s) 72
Hin1II CATG 4 cut(s) 27, 83, 701, 715
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HpaII CCGG 1 cut(s) 569
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 2 cut(s) 546, 734
Hpy188I TCNGA 3 cut(s) 66, 165, 323
Hpy188III TCNNGA 5 cut(s) 248, 454, 562, 649, 761
Hpy8I GTNNAC 2 cut(s) 546, 734
HpyAV CCTTC 3 cut(s) 67, 248, 254
HpyCH4III ACNGT 4 cut(s) 385, 481, 493, 676
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 4 cut(s) 151, 186, 433, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 4 cut(s) 38, 127, 189, 390
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 4 cut(s) 27, 83, 701, 715
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 625
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 315, 399, 571
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 3 cut(s) 57, 250, 274
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 7 cut(s) 109, 218, 293, 475, 493, 632, 740
MalI GATC 1 cut(s) 627
MboI GATC 1 cut(s) 625
MboII GAAGA 2 cut(s) 23, 26
MhlI GDGCHC 4 cut(s) 31, 90, 312, 624
MluCI AATT 2 cut(s) 9, 718
MnlI CCTC 6 cut(s) 136, 171, 206, 323, 399, 580
MslI CAYNNNNRTG 1 cut(s) 65
MspI CCGG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 658
MwoI GCNNNNNNNGC 1 cut(s) 364
NcoI CCATGG 2 cut(s) 79, 697
NdeII GATC 1 cut(s) 625
NlaIII CATG 4 cut(s) 27, 83, 701, 715
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 5 cut(s) 109, 218, 293, 475, 632
NsbI TGCGCA 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 658
PflFI GACNNNGTC 1 cut(s) 460
PkrI GCNGC 2 cut(s) 435, 601
PshAI GACNNNNGTC 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 105
PstI CTGCAG 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 460
RsaI GTAC 3 cut(s) 227, 387, 643
RsaNI GTAC 3 cut(s) 226, 386, 642
RseI CAYNNNNRTG 1 cut(s) 65
SacI GAGCTC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 2 cut(s) 434, 600
Sau3AI GATC 1 cut(s) 625
SduI GDGCHC 4 cut(s) 31, 90, 312, 624
SfaNI GCATC 3 cut(s) 57, 250, 274
SfcI CTRYAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 504, 560
SmoI CTYRAG 2 cut(s) 504, 560
Sse9I AATT 2 cut(s) 9, 718
SsiI CCGC 2 cut(s) 229, 599
SspMI CTAG 1 cut(s) 639
SstI GAGCTC 1 cut(s) 90
StyI CCWWGG 4 cut(s) 79, 202, 615, 697
TaaI ACNGT 4 cut(s) 385, 481, 493, 676
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 210, 315, 624
TasI AATT 2 cut(s) 9, 718
TatI WGTACW 1 cut(s) 641
TauI GCSGC 1 cut(s) 602
TscAI CASTG 5 cut(s) 54, 193, 283, 295, 581
TseFI GTSAC 5 cut(s) 109, 218, 293, 475, 632
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 5 cut(s) 109, 218, 293, 475, 632
TspDTI ATGAA 3 cut(s) 49, 170, 693
TspGWI ACGGA 3 cut(s) 206, 260, 620
TspRI CASTG 5 cut(s) 54, 193, 283, 295, 581
Tth111I GACNNNGTC 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 733
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.