Rroxscaffold_4G00301420

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000347
Physical Location & Seq
Forward (+)
21784669 .. 21788229
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301420.1

Sequence Viewer

Length: 822 bp
ATGTCACGCTGGTTTGAGCTGAAGCTTGATTTTCCTGAAGCTATTCTGCTCAAGAAAGCCGTAAGAGTGTTCACTCAGGTAGCCTATTCAGACCGAGAGCTCCCCACTTCCGTGTTCAACAATTTCATCCCCAACAATGCCGACCTCCACTTATCTCCGACCATGGTCCTACTGGTCTCCACAAACTCGCATTTTCGGCTTTCCGAAATGGCCACTGTGCTGGCGATGCCGCGCTCCTCCATGTCGAGATTATGGTGCTCCAAGAGCTGCCGCACGCTCTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAGCGCTGGGGATTCGGTTACTCTTTATGGTGATGAACAAGCTGTTGATAGGATTTTCTGTGAAATTGGGGATGATGATGGCATCAAATACTCCTCTACACTGCCAGTGATTTCATGGTGGGATCAGATTCAGATGGACCTAGGTTTCGTAGGATATGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTTGTTCCGTTATCACTGAATTGGATTCTCATGGGTTGAAAGTTCATGCCAAAGTATCAGAAACCCAAGTTGTGTTCCGGGTAGTGAATAACAAGACTGTCTTCAAAAGAAAGCCTGGGATTTGCGAGATTGAGAGTGTTGGTGATAGATATCCGTTTGAATTAAAGTTTGATCTCCAGCACAAGAGTGCGTTTCTCAATGCTGCTAGACTGTCAAAGATGGTATGGATACTTAAGTCTGTGGAGTTGATCACTGTGCTCAGCTTCCCTATTCTTGGCCTGGGTAACCTCATGTTTACGGCACCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

273

Amino Acids

30.97

Weight (kDa)

7.6

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 811
AccII CGCG 1 cut(s) 232
AciI CCGC 2 cut(s) 230, 271
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 3 cut(s) 41, 57, 486
AfeI AGCGCT 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 785
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 5 cut(s) 118, 301, 550, 616, 671
AjnI CCWGG 2 cut(s) 625, 789
AleI CACNNNNGTG 2 cut(s) 110, 696
AluBI AGCT 7 cut(s) 19, 25, 41, 100, 267, 359, 774
AluI AGCT 7 cut(s) 19, 25, 41, 100, 267, 359, 774
Alw21I GWGCWC 3 cut(s) 102, 260, 771
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 447
Aor51HI AGCGCT 1 cut(s) 322
AoxI GGCC 2 cut(s) 210, 787
ApeKI GCWGC 3 cut(s) 267, 318, 713
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 2 cut(s) 234, 323
AspS9I GGNCC 2 cut(s) 166, 454
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 359, 665
AvaII GGWCC 2 cut(s) 166, 454
AvrII CCTAGG 1 cut(s) 457
BaeI ACNNNNGTAYC 2 cut(s) 731, 764
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 2 cut(s) 492, 604
Bbv12I GWGCWC 3 cut(s) 102, 260, 771
BbvI GCAGC 3 cut(s) 254, 330, 700
BccI CCATC 3 cut(s) 389, 445, 724
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 627, 791
BciVI GTATCC 1 cut(s) 732
BclI TGATCA 1 cut(s) 759
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 458, 717
BfoI RGCGCY 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 743
BfuI GTATCC 1 cut(s) 732
BisI GCNGC 5 cut(s) 230, 268, 271, 319, 714
BlnI CCTAGG 1 cut(s) 457
BlpI GCTNAGC 1 cut(s) 770
BlsI GCNGC 5 cut(s) 231, 269, 272, 320, 715
Bme1390I CCNGG 3 cut(s) 590, 627, 791
Bme18I GGWCC 2 cut(s) 166, 454
BmgT120I GGNCC 2 cut(s) 166, 454
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 3 cut(s) 590, 627, 791
BmsI GCATC 2 cut(s) 216, 408
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 492, 604
BpmI CTGGAG 1 cut(s) 671
Bpu1102I GCTNAGC 1 cut(s) 770
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 590
BsaBI GATNNNNATC 1 cut(s) 660
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 162, 457, 626, 790
Bsc4I CCNNNNNNNGG 1 cut(s) 785
Bse1I ACTGG 3 cut(s) 177, 315, 422
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 2 cut(s) 627, 791
BseDI CCNNGG 4 cut(s) 162, 457, 626, 790
BseGI GGATG 2 cut(s) 126, 394
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 1 cut(s) 785
BseMII CTCAG 2 cut(s) 89, 784
BseNI ACTGG 3 cut(s) 177, 315, 422
BseRI GAGGAG 2 cut(s) 226, 400
BseXI GCAGC 3 cut(s) 254, 330, 700
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 212, 789
BshNI GGYRCC 1 cut(s) 811
BsiHKAI GWGCWC 3 cut(s) 102, 260, 771
BsiSI CCGG 1 cut(s) 589
BslI CCNNNNNNNGG 1 cut(s) 785
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 2 cut(s) 212, 789
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 3 cut(s) 102, 260, 771
Bsp143I GATC 3 cut(s) 439, 682, 759
Bsp1720I GCTNAGC 1 cut(s) 770
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 2 cut(s) 230, 271
BspANI GGCC 2 cut(s) 212, 789
BspCNI CTCAG 2 cut(s) 88, 783
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 813
BspPI GGATC 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 811
BspTI CTTAAG 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 3 cut(s) 177, 315, 422
BssECI CCNNGG 4 cut(s) 162, 457, 626, 790
BssMI GATC 3 cut(s) 439, 682, 759
BssT1I CCWWGG 2 cut(s) 162, 457
Bst2UI CCWGG 2 cut(s) 627, 791
Bst4CI ACNGT 4 cut(s) 217, 610, 723, 766
BstAFI CTTAAG 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 222, 275
BstDEI CTNAG 2 cut(s) 75, 770
BstDSI CCRYGG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 2 cut(s) 126, 394
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 2 cut(s) 234, 323
BstKTI GATC 3 cut(s) 442, 685, 762
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 439, 682, 759
BstMWI GCNNNNNNNGC 3 cut(s) 196, 226, 264
BstNI CCWGG 2 cut(s) 627, 791
BstPAI GACNNNNGTC 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 3 cut(s) 588, 625, 789
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 254, 330, 700
BstV2I GAAGAC 2 cut(s) 492, 604
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 2 cut(s) 212, 789
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 126, 394
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 5 cut(s) 213, 416, 429, 525, 762
Cac8I GCNNGC 2 cut(s) 222, 275
CfoI GCGC 2 cut(s) 234, 323
Cfr13I GGNCC 2 cut(s) 166, 454
CviAII CATG 6 cut(s) 163, 241, 432, 542, 557, 802
DdeI CTNAG 2 cut(s) 75, 770
DpnI GATC 3 cut(s) 441, 684, 761
DpnII GATC 3 cut(s) 439, 682, 759
EaeI YGGCCR 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 162, 457
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 662
Eco47I GGWCC 2 cut(s) 166, 454
Eco47III AGCGCT 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 3 cut(s) 41, 57, 486
Eco91I GGTNACC 1 cut(s) 794
EcoICRI GAGCTC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 625, 789
EcoRV GATATC 1 cut(s) 662
EcoT14I CCWWGG 2 cut(s) 162, 457
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 162, 457
FaeI CATG 6 cut(s) 166, 244, 435, 545, 560, 805
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FatI CATG 6 cut(s) 162, 240, 431, 541, 556, 801
FbaI TGATCA 1 cut(s) 759
Fnu4HI GCNGC 5 cut(s) 230, 268, 271, 319, 714
FokI GGATG 2 cut(s) 113, 401
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 230, 268, 271, 319, 714
FspBI CTAG 2 cut(s) 458, 717
GlaI GCGC 2 cut(s) 233, 322
GluI GCNGC 5 cut(s) 230, 268, 271, 319, 714
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 671
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 212, 789
HapII CCGG 1 cut(s) 589
HhaI GCGC 2 cut(s) 234, 323
Hin1II CATG 6 cut(s) 166, 244, 435, 545, 560, 805
Hin6I GCGC 2 cut(s) 232, 321
HinP1I GCGC 2 cut(s) 232, 321
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 3 cut(s) 329, 445, 536
HpaII CCGG 1 cut(s) 589
HphI GGTGA 2 cut(s) 359, 665
Hpy166II GTNNAC 2 cut(s) 72, 807
Hpy188I TCNGA 7 cut(s) 91, 159, 205, 444, 450, 505, 571
Hpy188III TCNNGA 3 cut(s) 35, 52, 246
Hpy8I GTNNAC 2 cut(s) 72, 807
HpyCH4III ACNGT 4 cut(s) 217, 610, 723, 766
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 226, 264
HpyF3I CTNAG 2 cut(s) 75, 770
Hsp92II CATG 6 cut(s) 166, 244, 435, 545, 560, 805
HspAI GCGC 2 cut(s) 232, 321
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 3 cut(s) 439, 682, 759
LmnI GCTCC 3 cut(s) 105, 239, 263
Lsp1109I GCAGC 3 cut(s) 254, 330, 700
LweI GCATC 2 cut(s) 216, 408
MaeI CTAG 2 cut(s) 458, 717
MaeIII GTNAC 3 cut(s) 3, 334, 794
MalI GATC 3 cut(s) 441, 684, 761
MboI GATC 3 cut(s) 439, 682, 759
MboII GAAGA 2 cut(s) 492, 604
MhlI GDGCHC 3 cut(s) 102, 260, 771
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 5 cut(s) 121, 381, 530, 671, 817
MluNI TGGCCA 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 5 cut(s) 155, 247, 421, 480, 809
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 212
MseI TTAA 2 cut(s) 674, 744
MslI CAYNNNNRTG 2 cut(s) 110, 696
Msp20I TGGCCA 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 1 cut(s) 589
MspR9I CCNGG 3 cut(s) 590, 627, 791
MvaI CCWGG 2 cut(s) 627, 791
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 196, 226, 264
NciI CCSGG 1 cut(s) 590
NcoI CCATGG 1 cut(s) 162
NdeII GATC 3 cut(s) 439, 682, 759
NlaIII CATG 6 cut(s) 166, 244, 435, 545, 560, 805
NlaIV GGNNCC 1 cut(s) 813
NmuCI GTSAC 1 cut(s) 3
OliI CACNNNNGTG 2 cut(s) 110, 696
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 329, 445, 536
PkrI GCNGC 5 cut(s) 231, 269, 272, 320, 715
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 625, 789
PspEI GGTNACC 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 625, 789
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 2 cut(s) 166, 454
RseI CAYNNNNRTG 2 cut(s) 110, 696
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 674, 744
SatI GCNGC 5 cut(s) 230, 268, 271, 319, 714
Sau3AI GATC 3 cut(s) 439, 682, 759
Sau96I GGNCC 2 cut(s) 166, 454
ScrFI CCNGG 3 cut(s) 590, 627, 791
SduI GDGCHC 3 cut(s) 102, 260, 771
SfaNI GCATC 2 cut(s) 216, 408
SinI GGWCC 2 cut(s) 166, 454
SmiMI CAYNNNNRTG 2 cut(s) 110, 696
SmlI CTYRAG 2 cut(s) 50, 743
SmoI CTYRAG 2 cut(s) 50, 743
Sse9I AATT 5 cut(s) 121, 381, 530, 671, 817
SsiI CCGC 2 cut(s) 230, 271
SspMI CTAG 2 cut(s) 458, 717
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 588, 625, 789
StyI CCWWGG 2 cut(s) 162, 457
TaaI ACNGT 4 cut(s) 217, 610, 723, 766
TaqI TCGA 1 cut(s) 245
TaqII GACCGA 1 cut(s) 108
TasI AATT 5 cut(s) 121, 381, 530, 671, 817
TauI GCSGC 2 cut(s) 232, 273
TfiI GAWTC 3 cut(s) 329, 445, 536
Tru1I TTAA 2 cut(s) 674, 744
Tru9I TTAA 2 cut(s) 674, 744
TscAI CASTG 5 cut(s) 220, 423, 429, 532, 769
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 267, 318, 713
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 5 cut(s) 115, 366, 420, 489, 545
TspGWI ACGGA 3 cut(s) 100, 508, 654
TspRI CASTG 5 cut(s) 220, 423, 429, 532, 769
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 166, 454
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 429
XmaJI CCTAGG 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 458, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.