Rroxscaffold_4G00301520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000347
Physical Location & Seq
Forward (+)
21859772 .. 21863269
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301520.1

Sequence Viewer

Length: 585 bp
ATGAGTGCCGACTCGTGGGAGACTGCGCCGACTTCACCGGAGGAGGAGGTCATGTCGGAGGCGGCGGCGGCGGCGGCAGCGGCGGCGTCTTCATCATCGGAGGAGGTTGTGGAAGACACAGACTCTGATCAGACCACCATCAAGTCGTCGTCGTCGTCCTCGGCGGAGAAGAGGCAAAATCTCTGGTTTTATGCGGAGCTGAACCAAGTCCGTCTTCTCCAGAGGGCCTTGAGACCCCTGTTTCAGACTGCCTACACCGACCGAGAGTACCCTGACGACATGTTCCTCGCCGGACATATCCGCGACGCCGGCCACCTCTGCGTATCGCCGGACGGGATTCTTCTGATCTGCACAACCTCTTTCCCGCCTCATCTTGACGCCTATCTCCAACTGCCTCTCGCAACCTTCTCCGCCTTTCGCTGCCGCAAGGAGCGCGTGCTGGACCTCCACCTCCGCCTCTTGGAGAACCGAATCAACAGTAGCATCGACGATTATGAAGACGATGATGATGGCATTTCTGTATGCTTCTCCGGAGCGAAGCCGAACTACAACGCCCTGCTCTATTCTCTGAGGGACAGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.56

Weight (kDa)

4.52

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 303, 435
AccIII TCCGGA 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 310
AcyI GRCGYC 3 cut(s) 86, 306, 378
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 15, 460
AflIII ACRYGT 1 cut(s) 279
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 14, 226
AlwNI CAGNNNCTG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 530
AoxI GGCC 2 cut(s) 225, 310
ApeKI GCWGC 2 cut(s) 77, 420
AspLEI GCGC 2 cut(s) 28, 435
AspS9I GGNCC 2 cut(s) 225, 442
AsuHPI GGTGA 1 cut(s) 27
AvaII GGWCC 1 cut(s) 442
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 4 cut(s) 81, 120, 206, 504
BbvI GCAGC 2 cut(s) 89, 407
BccI CCATC 2 cut(s) 146, 503
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 14, 226
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 225, 442
BmsI GCATC 1 cut(s) 492
BpiI GAAGAC 4 cut(s) 81, 120, 206, 504
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 250
BsaHI GRCGYC 3 cut(s) 86, 306, 378
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 159
BsaWI WCCGGW 2 cut(s) 37, 530
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 460
Bse118I RCCGGY 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 530
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 15, 460
BseMII CTCAG 1 cut(s) 560
BseRI GAGGAG 3 cut(s) 56, 59, 116
BseXI GCAGC 2 cut(s) 89, 407
BsgI GTGCAG 1 cut(s) 334
Bsh1236I CGCG 2 cut(s) 303, 435
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 2 cut(s) 227, 312
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 5 cut(s) 38, 291, 309, 329, 531
BslI CCNNNNNNNGG 2 cut(s) 15, 460
BsmAI GTCTC 2 cut(s) 14, 226
BsnI GGCC 2 cut(s) 227, 312
Bso31I GGTCTC 1 cut(s) 226
Bsp13I TCCGGA 1 cut(s) 530
Bsp143I GATC 2 cut(s) 127, 345
BspANI GGCC 2 cut(s) 227, 312
BspCNI CTCAG 1 cut(s) 561
BspEI TCCGGA 1 cut(s) 530
BspFNI CGCG 2 cut(s) 303, 435
BspTNI GGTCTC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 127, 345
BssNI GRCGYC 3 cut(s) 86, 306, 378
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 479, 578
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 3 cut(s) 86, 306, 378
BstC8I GCNNGC 2 cut(s) 310, 437
BstDEI CTNAG 1 cut(s) 569
BstFNI CGCG 2 cut(s) 303, 435
BstHHI GCGC 2 cut(s) 28, 435
BstKTI GATC 2 cut(s) 130, 348
BstMAI GTCTC 2 cut(s) 14, 226
BstMBI GATC 2 cut(s) 127, 345
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 9 cut(s) 68, 71, 74, 77, 80, 83, 309, 318, 432
BstNSI RCATGY 1 cut(s) 283
BstUI CGCG 2 cut(s) 303, 435
BstV1I GCAGC 2 cut(s) 89, 407
BstV2I GAAGAC 4 cut(s) 81, 120, 206, 504
BsuRI GGCC 2 cut(s) 227, 312
Cac8I GCNNGC 2 cut(s) 310, 437
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 2 cut(s) 28, 435
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 225, 442
CseI GACGC 3 cut(s) 75, 314, 386
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 52, 280
CviJI RGCY 4 cut(s) 199, 227, 312, 541
CviKI_1 RGCY 4 cut(s) 199, 227, 312, 541
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 569
DpnI GATC 2 cut(s) 129, 347
DpnII GATC 2 cut(s) 127, 345
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 3 cut(s) 179, 400, 443
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 442
EcoO109I RGGNCCY 1 cut(s) 225
FaeI CATG 2 cut(s) 55, 283
FaiI YATR 6 cut(s) 53, 192, 281, 297, 495, 523
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 2 cut(s) 51, 279
FauI CCCGC 1 cut(s) 372
FbaI TGATCA 1 cut(s) 127
GlaI GCGC 2 cut(s) 27, 434
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 227, 312
HapII CCGG 5 cut(s) 38, 291, 309, 329, 531
HgaI GACGC 3 cut(s) 75, 314, 386
HhaI GCGC 2 cut(s) 28, 435
Hin1I GRCGYC 3 cut(s) 86, 306, 378
Hin1II CATG 2 cut(s) 55, 283
Hin6I GCGC 2 cut(s) 26, 433
HinP1I GCGC 2 cut(s) 26, 433
HinfI GANTC 4 cut(s) 11, 122, 337, 471
HpaII CCGG 5 cut(s) 38, 291, 309, 329, 531
HphI GGTGA 1 cut(s) 27
Hpy188I TCNGA 7 cut(s) 58, 100, 127, 132, 246, 345, 570
Hpy188III TCNNGA 3 cut(s) 220, 374, 531
Hpy99I CGWCG 5 cut(s) 151, 154, 157, 308, 491
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 2 cut(s) 479, 578
HpyCH4V TGCA 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 71, 74, 77, 80, 83, 309, 318, 432
HpyF3I CTNAG 1 cut(s) 569
Hsp92I GRCGYC 3 cut(s) 86, 306, 378
Hsp92II CATG 2 cut(s) 55, 283
HspAI GCGC 2 cut(s) 26, 433
Kpn2I TCCGGA 1 cut(s) 530
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 2 cut(s) 127, 345
LmnI GCTCC 3 cut(s) 196, 430, 533
Lsp1109I GCAGC 2 cut(s) 89, 407
LweI GCATC 1 cut(s) 492
MalI GATC 2 cut(s) 129, 347
MboI GATC 2 cut(s) 127, 345
MboII GAAGA 6 cut(s) 81, 125, 181, 206, 332, 509
MlyI GAGTC 2 cut(s) 5, 116
MmeI TCCRAC 2 cut(s) 36, 412
MroI TCCGGA 1 cut(s) 530
MroNI GCCGGC 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 5 cut(s) 38, 291, 309, 329, 531
MvnI CGCG 2 cut(s) 303, 435
MwoI GCNNNNNNNGC 9 cut(s) 68, 71, 74, 77, 80, 83, 309, 318, 432
NaeI GCCGGC 1 cut(s) 310
NdeII GATC 2 cut(s) 127, 345
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 2 cut(s) 55, 283
NmeAIII GCCGAG 1 cut(s) 140
NspI RCATGY 1 cut(s) 283
PciI ACATGT 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 337, 471
PleI GAGTC 2 cut(s) 5, 116
PpsI GAGTC 2 cut(s) 5, 116
PscI ACATGT 1 cut(s) 279
PspPI GGNCC 2 cut(s) 225, 442
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
Sau3AI GATC 2 cut(s) 127, 345
Sau96I GGNCC 2 cut(s) 225, 442
SchI GAGTC 2 cut(s) 5, 116
SetI ASST 8 cut(s) 51, 108, 201, 318, 359, 407, 447, 453
SfaNI GCATC 1 cut(s) 492
SinI GGWCC 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 479, 578
TaqI TCGA 1 cut(s) 486
TaqII GACCGA 1 cut(s) 276
TauI GCSGC 8 cut(s) 65, 68, 71, 74, 77, 83, 86, 426
TfiI GAWTC 2 cut(s) 337, 471
TseI GCWGC 2 cut(s) 77, 420
TspDTI ATGAA 2 cut(s) 81, 510
TspGWI ACGGA 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 442
XceI RCATGY 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.