RLG00000028419

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000347
Physical Location & Seq
Forward (+)
22551780 .. 22553040
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028419

Sequence Viewer

Length: 480 bp
ATGGTGGTTGAGTGGGAACAGGAAAGGAAAGCGCGGTGCTTCCTTATTTTCTGGGACAGGAGCCGGAGCCTTAGCTCGATCTACTCCAGTGGCAGCGGCGAGGCTCGATCTACTCATGTTATCCTTCAGTGCCAGCGGCGAGGCTCTATCTACTCCTCATGGTGGTCCAACGAGACTCTAACCATGTTTGAGCTCCAACTGAACCAAGGCGCTATTCTTCTCCTGAAGGCTGTGGCGGCACTCATCGACCTGGTCGACTTTGCCGATGTCTCACCGGATGAGGTAATCTTGCTGATTTCCAGCAACTCCATGATCTCTGAGGGGGACTTTGTGATGCTGTGGATTCCGGAGTTTACCTGCGCTTGCATCATTTGCAAGGGCGTAGCTACATGGACATCAAAAGGGTCACTTAATCCTACTCGCCATCTTGATAAACTCCATTCTGTCTTAAGTGTTTGCTTTTATGTAAGAGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.01

Weight (kDa)

5.58

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 4 cut(s) 34, 96, 136, 236
AcuI CTGAAG 2 cut(s) 110, 245
AfiI CCNNNNNNNGG 1 cut(s) 162
AflII CTTAAG 1 cut(s) 448
AjnI CCWGG 1 cut(s) 249
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 3 cut(s) 75, 193, 386
AluI AGCT 3 cut(s) 75, 193, 386
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 167, 274
Aor13HI TCCGGA 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 93
AspLEI GCGC 3 cut(s) 34, 212, 362
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 264
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 167, 274
BfoI RGCGCY 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 448
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 4 cut(s) 94, 97, 137, 237
BlsI GCNGC 4 cut(s) 95, 98, 138, 238
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 62, 68
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 2 cut(s) 324, 375
BpmI CTGGAG 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 2 cut(s) 274, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 346
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 3 cut(s) 64, 275, 347
BslFI GGGAC 2 cut(s) 68, 338
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 167, 274
BsmFI GGGAC 2 cut(s) 68, 338
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 78, 107, 312
BspACI CCGC 4 cut(s) 34, 96, 136, 236
BspCNI CTCAG 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 62, 68
BspMI ACCTGC 1 cut(s) 365
BspTI CTTAAG 1 cut(s) 448
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 3 cut(s) 78, 107, 312
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 134, 364
BstDEI CTNAG 2 cut(s) 71, 318
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 34, 212, 362
BstKTI GATC 3 cut(s) 81, 110, 315
BstMAI GTCTC 2 cut(s) 167, 274
BstMBI GATC 3 cut(s) 78, 107, 312
BstMWI GCNNNNNNNGC 2 cut(s) 236, 372
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 94, 134
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 2 cut(s) 134, 364
CfoI GCGC 3 cut(s) 34, 212, 362
Cfr13I GGNCC 1 cut(s) 165
CsiI ACCWGGT 1 cut(s) 249
CviAII CATG 5 cut(s) 116, 159, 184, 310, 390
CviJI RGCY 8 cut(s) 63, 69, 75, 104, 144, 193, 230, 386
CviKI_1 RGCY 8 cut(s) 63, 69, 75, 104, 144, 193, 230, 386
DdeI CTNAG 2 cut(s) 71, 318
DpnI GATC 3 cut(s) 80, 109, 314
DpnII GATC 3 cut(s) 78, 107, 312
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 110, 245
EcoICRI GAGCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 5 cut(s) 119, 162, 187, 313, 393
FaiI YATR 7 cut(s) 117, 160, 185, 311, 391, 465, 478
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 2 cut(s) 68, 338
FatI CATG 5 cut(s) 115, 158, 183, 309, 389
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 94, 97, 137, 237
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 94, 97, 137, 237
GlaI GCGC 3 cut(s) 33, 211, 361
GluI GCNGC 4 cut(s) 94, 97, 137, 237
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 213
HapII CCGG 3 cut(s) 64, 275, 347
HhaI GCGC 3 cut(s) 34, 212, 362
Hin1II CATG 5 cut(s) 119, 162, 187, 313, 393
Hin6I GCGC 3 cut(s) 32, 210, 360
HinP1I GCGC 3 cut(s) 32, 210, 360
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 175, 343
HpaII CCGG 3 cut(s) 64, 275, 347
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 2 cut(s) 256, 354
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 3 cut(s) 223, 347, 428
Hpy8I GTNNAC 2 cut(s) 256, 354
HpyAV CCTTC 2 cut(s) 134, 220
HpyCH4V TGCA 2 cut(s) 366, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 372
HpyF3I CTNAG 2 cut(s) 71, 318
Hsp92II CATG 5 cut(s) 119, 162, 187, 313, 393
HspAI GCGC 3 cut(s) 32, 210, 360
Kpn2I TCCGGA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 78, 107, 312
LmnI GCTCC 3 cut(s) 60, 66, 198
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 2 cut(s) 324, 375
MabI ACCWGGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 405
MalI GATC 3 cut(s) 80, 109, 314
MboI GATC 3 cut(s) 78, 107, 312
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 2 cut(s) 192, 220
MnlI CCTC 5 cut(s) 94, 134, 166, 274, 313
MroI TCCGGA 1 cut(s) 346
MseI TTAA 2 cut(s) 411, 449
MspA1I CMGCKG 2 cut(s) 96, 136
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 3 cut(s) 64, 275, 347
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 236, 372
NdeII GATC 3 cut(s) 78, 107, 312
NlaIII CATG 5 cut(s) 119, 162, 187, 313, 393
NlaIV GGNNCC 2 cut(s) 62, 68
NmuCI GTSAC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 261
PfeI GAWTC 1 cut(s) 343
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 4 cut(s) 95, 98, 138, 238
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 62, 68
PspPI GGNCC 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 251
SacI GAGCTC 1 cut(s) 195
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 2 cut(s) 411, 449
SatI GCNGC 4 cut(s) 94, 97, 137, 237
Sau3AI GATC 3 cut(s) 78, 107, 312
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 195
SetI ASST 6 cut(s) 77, 195, 252, 285, 359, 388
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 2 cut(s) 324, 375
SinI GGWCC 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SsiI CCGC 4 cut(s) 34, 96, 136, 236
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 205
TaqI TCGA 4 cut(s) 77, 106, 246, 255
TauI GCSGC 3 cut(s) 99, 139, 239
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 411, 449
Tru9I TTAA 2 cut(s) 411, 449
TscAI CASTG 2 cut(s) 94, 134
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 405
TspRI CASTG 2 cut(s) 94, 134
Tth111I GACNNNGTC 1 cut(s) 251
Vha464I CTTAAG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.