RLG00000028239

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000347
Physical Location & Seq
Forward (+)
20442846 .. 20445844
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028239

Sequence Viewer

Length: 945 bp
ATGCCGCTGTGGTTCGACCCCAAGCTTGATCGGTGCAAAGCGATTTTGCTGAAGAAGGCCGTCAGAGCCATGGCTCAAGTAGCCTTTACGGACAGAGAGCTCACCAGCCGCCCCCAAACCATCAACCTCTGCATCACTCCGGAGATCGTCACACTGGTTTCCAAAACCAAGTCTACTGATGCCAGATTCGAGTGCTACGAAAGTAGGAATCTGCATTTCAATCTGCATAGCTTGCTTTGCCTATTGGAGCAGAACACTAAGTTTGCGGTCACTCTTTATGATGAGGTAGAAGATGAGGATGTGATTTGGTATGAGCTTGAGGAAGGTACTTTTCGCATGATTTACACCTCTACAATGCGGCTGGATTCTTGGACTAAGAATGAGATGGACATGGGTTTCTTGGTATATAAATATCCAGTGTGCCTTGGCTTGTCTTCAAAGAGCTTTTGTGACCTTATCACTGATATGGGTTCTCATGGGTGTACAGTTCATGCCGCACTATTCAAAAATGTAGCTGTTTTCCGTGTAGTGAATTACGAGCTTGTCTTCCCAATAGAGCCCTTGATTTGCGAGACTCAGAGTGATCGTGGATTTCCTTGTACGTTGAAGTTTGATATCCAGCACAAGGGTGCGCTTCTCAATGCTGCTACGTTGTCAGAGATGATATGGTCATGGTTCTCAGATTCGTTCACCATGCTTAATTTCCCAATTCGTGGCTTGGCTCGGCATAGATCTCCGTGGTGCTCCTCCGACGACGGCTGTGTTAGTGTGGCGTCCTTAATCTCGGCGAAACGACGTCGCTCTGGATCACTCCATGCCGATAATGTCGGCGGCGACGATCCAATCGGCTTCGCGACCCTGAATTCCTATAGGTACTTTTTATACTATCTTCGATTTTGCGGTGGCGTTTATATTTTCTGGGGATTTACGAGTCGCTGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

36.02

Weight (kDa)

6.39

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 799
AccB7I CCANNNNNTGG 1 cut(s) 713
AccI GTMKAC 1 cut(s) 173
AccII CGCG 1 cut(s) 854
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 7 cut(s) 5, 109, 266, 358, 495, 831, 900
AclWI GGATC 2 cut(s) 814, 833
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 2 cut(s) 773, 796
AfaI GTAC 4 cut(s) 328, 484, 601, 875
AfiI CCNNNNNNNGG 2 cut(s) 625, 713
AgsI TTSAA 4 cut(s) 220, 438, 505, 607
AleI CACNNNNGTG 1 cut(s) 627
AluBI AGCT 7 cut(s) 25, 100, 231, 316, 444, 515, 541
AluI AGCT 7 cut(s) 25, 100, 231, 316, 444, 515, 541
Alw21I GWGCWC 2 cut(s) 102, 746
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 2 cut(s) 814, 833
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 862
AspLEI GCGC 1 cut(s) 634
AsuHPI GGTGA 2 cut(s) 94, 682
BanII GRGCYC 2 cut(s) 102, 561
BbsI GAAGAC 2 cut(s) 426, 538
Bbv12I GWGCWC 2 cut(s) 102, 746
BbvI GCAGC 1 cut(s) 631
BccI CCATC 2 cut(s) 128, 379
BceAI ACGGC 2 cut(s) 44, 772
BcoDI GTCTC 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 868
BglII AGATCT 1 cut(s) 731
BisI GCNGC 6 cut(s) 5, 109, 359, 495, 645, 832
BlsI GCNGC 6 cut(s) 6, 110, 360, 496, 646, 833
BmsI GCATC 2 cut(s) 141, 169
BpiI GAAGAC 2 cut(s) 426, 538
BpuEI CTTGAG 2 cut(s) 60, 338
BsaHI GRCGYC 2 cut(s) 773, 796
BsaJI CCNNGG 3 cut(s) 69, 424, 737
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 713
Bse1I ACTGG 2 cut(s) 159, 416
BseAI TCCGGA 1 cut(s) 139
BseDI CCNNGG 3 cut(s) 69, 424, 737
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 625, 713
BseMII CTCAG 2 cut(s) 590, 693
BseNI ACTGG 2 cut(s) 159, 416
BseRI GAGGAG 1 cut(s) 736
BseXI GCAGC 1 cut(s) 631
BseYI CCCAGC 1 cut(s) 936
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 2 cut(s) 102, 746
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 625, 713
BsmAI GTCTC 1 cut(s) 566
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 102, 561, 746
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 482
Bsp143I GATC 6 cut(s) 28, 144, 583, 731, 806, 838
Bsp19I CCATGG 1 cut(s) 69
Bsp68I TCGCGA 1 cut(s) 854
BspACI CCGC 7 cut(s) 5, 109, 266, 358, 495, 831, 900
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 589, 692
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 1 cut(s) 854
BspPI GGATC 2 cut(s) 814, 833
BsrGI TGTACA 1 cut(s) 482
BsrI ACTGG 2 cut(s) 159, 416
BssECI CCNNGG 3 cut(s) 69, 424, 737
BssMI GATC 6 cut(s) 28, 144, 583, 731, 806, 838
BssNI GRCGYC 2 cut(s) 773, 796
BssT1I CCWWGG 2 cut(s) 69, 424
Bst4CI ACNGT 1 cut(s) 487
BstACI GRCGYC 2 cut(s) 773, 796
BstAPI GCANNNNNTGC 1 cut(s) 232
BstAUI TGTACA 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 4 cut(s) 258, 375, 576, 679
BstDSI CCRYGG 2 cut(s) 69, 737
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 854
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 6 cut(s) 31, 147, 586, 734, 809, 841
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 6 cut(s) 28, 144, 583, 731, 806, 838
BstMWI GCNNNNNNNGC 4 cut(s) 65, 80, 232, 237
BstSFI CTRYAG 1 cut(s) 868
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 1 cut(s) 631
BstV2I GAAGAC 2 cut(s) 426, 538
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 2 cut(s) 69, 737
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 3 cut(s) 152, 423, 459
BtuMI TCGCGA 1 cut(s) 854
Cac8I GCNNGC 1 cut(s) 233
CfoI GCGC 1 cut(s) 634
CseI GACGC 1 cut(s) 762
Csp6I GTAC 4 cut(s) 327, 483, 600, 874
CviAII CATG 8 cut(s) 70, 337, 391, 476, 491, 672, 694, 815
CviQI GTAC 4 cut(s) 327, 483, 600, 874
DdeI CTNAG 4 cut(s) 258, 375, 576, 679
DpnI GATC 6 cut(s) 30, 146, 585, 733, 808, 840
DpnII GATC 6 cut(s) 28, 144, 583, 731, 806, 838
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 69, 424
Eco24I GRGCYC 2 cut(s) 102, 561
Eco32I GATATC 1 cut(s) 616
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 862
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 69, 424
EcoT38I GRGCYC 2 cut(s) 102, 561
ErhI CCWWGG 2 cut(s) 69, 424
FaeI CATG 8 cut(s) 73, 340, 394, 479, 494, 675, 697, 818
FatI CATG 8 cut(s) 69, 336, 390, 475, 490, 671, 693, 814
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 6 cut(s) 5, 109, 359, 495, 645, 832
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 2 cut(s) 102, 561
Fsp4HI GCNGC 6 cut(s) 5, 109, 359, 495, 645, 832
GlaI GCGC 1 cut(s) 633
GluI GCNGC 6 cut(s) 5, 109, 359, 495, 645, 832
GsaI CCCAGC 1 cut(s) 940
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 762
HhaI GCGC 1 cut(s) 634
Hin1I GRCGYC 2 cut(s) 773, 796
Hin1II CATG 8 cut(s) 73, 340, 394, 479, 494, 675, 697, 818
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 6 cut(s) 186, 208, 365, 574, 683, 931
HpaII CCGG 1 cut(s) 140
HphI GGTGA 2 cut(s) 94, 682
Hpy166II GTNNAC 3 cut(s) 174, 483, 690
Hpy188I TCNGA 5 cut(s) 65, 579, 658, 682, 751
Hpy188III TCNNGA 3 cut(s) 140, 804, 853
Hpy8I GTNNAC 3 cut(s) 174, 483, 690
Hpy99I CGWCG 5 cut(s) 755, 758, 798, 801, 839
HpyAV CCTTC 2 cut(s) 49, 317
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 3 cut(s) 602, 650, 796
HpyCH4V TGCA 4 cut(s) 36, 132, 214, 226
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 80, 232, 237
HpyF3I CTNAG 4 cut(s) 258, 375, 576, 679
HpySE526I ACGT 3 cut(s) 602, 650, 796
Hsp92I GRCGYC 2 cut(s) 773, 796
Hsp92II CATG 8 cut(s) 73, 340, 394, 479, 494, 675, 697, 818
HspAI GCGC 1 cut(s) 632
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 6 cut(s) 28, 144, 583, 731, 806, 838
LmnI GCTCC 2 cut(s) 247, 749
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 2 cut(s) 141, 169
MaeII ACGT 3 cut(s) 602, 650, 796
MaeIII GTNAC 3 cut(s) 148, 268, 449
MalI GATC 6 cut(s) 30, 146, 585, 733, 808, 840
MboI GATC 6 cut(s) 28, 144, 583, 731, 806, 838
MboII GAAGA 5 cut(s) 64, 302, 426, 538, 881
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 3 cut(s) 102, 561, 746
MluCI AATT 4 cut(s) 532, 700, 708, 862
MlyI GAGTC 2 cut(s) 568, 940
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 6 cut(s) 137, 277, 289, 313, 358, 757
MroI TCCGGA 1 cut(s) 139
MseI TTAA 3 cut(s) 699, 779, 943
MslI CAYNNNNRTG 2 cut(s) 464, 627
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 4 cut(s) 65, 80, 232, 237
NcoI CCATGG 1 cut(s) 69
NdeII GATC 6 cut(s) 28, 144, 583, 731, 806, 838
NlaIII CATG 8 cut(s) 73, 340, 394, 479, 494, 675, 697, 818
NmeAIII GCCGAG 2 cut(s) 703, 764
NmuCI GTSAC 3 cut(s) 148, 268, 449
NruI TCGCGA 1 cut(s) 854
OliI CACNNNNGTG 1 cut(s) 627
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 834
PfeI GAWTC 4 cut(s) 186, 208, 365, 683
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 6 cut(s) 6, 110, 360, 496, 646, 833
PleI GAGTC 2 cut(s) 568, 939
PpsI GAGTC 2 cut(s) 568, 939
Psp124BI GAGCTC 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 936
PsuI RGATCY 1 cut(s) 731
RruI TCGCGA 1 cut(s) 854
RsaI GTAC 4 cut(s) 328, 484, 601, 875
RsaNI GTAC 4 cut(s) 327, 483, 600, 874
RseI CAYNNNNRTG 2 cut(s) 464, 627
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 699, 779, 943
SatI GCNGC 6 cut(s) 5, 109, 359, 495, 645, 832
Sau3AI GATC 6 cut(s) 28, 144, 583, 731, 806, 838
SchI GAGTC 2 cut(s) 568, 940
SduI GDGCHC 3 cut(s) 102, 561, 746
SfaNI GCATC 2 cut(s) 141, 169
SfcI CTRYAG 1 cut(s) 868
SmiMI CAYNNNNRTG 2 cut(s) 464, 627
SmlI CTYRAG 2 cut(s) 75, 317
SmoI CTYRAG 2 cut(s) 75, 317
Sse9I AATT 4 cut(s) 532, 700, 708, 862
SsiI CCGC 7 cut(s) 5, 109, 266, 358, 495, 831, 900
SstI GAGCTC 1 cut(s) 102
StyI CCWWGG 2 cut(s) 69, 424
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 3 cut(s) 605, 653, 799
TaqI TCGA 3 cut(s) 15, 189, 892
TasI AATT 4 cut(s) 532, 700, 708, 862
TatI WGTACW 1 cut(s) 482
TauI GCSGC 5 cut(s) 7, 111, 361, 497, 834
TfiI GAWTC 4 cut(s) 186, 208, 365, 683
Tru1I TTAA 3 cut(s) 699, 779, 943
Tru9I TTAA 3 cut(s) 699, 779, 943
TscAI CASTG 3 cut(s) 159, 423, 466
TseFI GTSAC 3 cut(s) 148, 268, 449
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 3 cut(s) 148, 268, 449
TspDTI ATGAA 1 cut(s) 479
TspGWI ACGGA 3 cut(s) 104, 512, 726
TspRI CASTG 3 cut(s) 159, 423, 466
Van91I CCANNNNNTGG 1 cut(s) 713
XapI RAATTY 1 cut(s) 862
XmiI GTMKAC 1 cut(s) 173
ZraI GACGTC 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.