Rroxscaffold_4G00301670

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000347
Physical Location & Seq
Forward (+)
22030825 .. 22033195
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301670.1

Sequence Viewer

Length: 756 bp
ATGTTTGAGCTCCAACTGAACCAAGGGGCCGTTCTTCTCCGGAAGGCCGTGGCGCCACTCGTCGACCTGGCCGACTTCGCCGACGTCGAAATCTCCCCGGAGGAGGTGATCTTGCTGACCGCCGGCAACCCCGTCATCTCCGAGGAGGACTTCGTCGTGCTGCGGATTCCTGAATCGACCTTCGCTCGCGTCGTCTGCGACTTTGCCGGATCGTTCGTTCTCAACCTCCGCCGCTTGTATTCCAATCTGAGTCGCGCCGGCGACGACGACGCGCTCACCATTCACGGCGACGACGGCGACGATATGATCGGCTTCGTGACCGTGAATTCCGGAACTGGGGAGTTTGGTTTCTCTGAAATGGAATTGTCTGAATCATACGCTGAAGGGCTGGATTTACCAGAGTTAGATTATGAATATCAAGCCATCATTGGGATACCTTCAGAGGAGTTTAGACATCTTATCATACATCTGCACTACTTTGGGAATTCTGTTTCTGTACATGCGACCGATACTGAAGTCAAGTTTTCTGCAGTAAATGAGGAGGTTGTTTACAGGACAGAGCTTGGGGAATGTATTATTGGGGGTGTCCAGCATGAACATCCAGTTTCCTTGATCTTCAGTCTCCACTTCCTCAGCGTCATCCTGAACGCGTGTCTTCTGTCAAACATTGTATGGTTGCTCCAGTCTGATGACTTACCTCCCATGCTGAATTGCCCTGTTGGTTCAATAGGCAACCTCATGTTTTACTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

251

Amino Acids

27.74

Weight (kDa)

4.25

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCNA_N PF00705 1 - 110 4e-07 Proliferating cell nuclear antigen, N-terminal domain
PCNA_C PF02747 136 - 249 6.7e-10 Proliferating cell nuclear antigen, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 63
AccII CGCG 4 cut(s) 189, 255, 272, 650
AccIII TCCGGA 2 cut(s) 39, 329
AciI CCGC 4 cut(s) 120, 163, 229, 232
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 325, 484
AcuI CTGAAG 4 cut(s) 402, 423, 534, 601
AcyI GRCGYC 2 cut(s) 53, 84
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 3 cut(s) 103, 336, 429
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 1 cut(s) 726
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 4 cut(s) 15, 47, 561, 593
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 10, 562
AluI AGCT 2 cut(s) 10, 562
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 4 cut(s) 217, 975, 1052, 1065
Aor13HI TCCGGA 2 cut(s) 39, 329
AoxI GGCC 3 cut(s) 27, 45, 69
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 325, 484
AspLEI GCGC 3 cut(s) 55, 257, 274
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 118, 268
BaeI ACNNNNGTAYC 2 cut(s) 501, 534
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 431
BceAI ACGGC 4 cut(s) 14, 32, 301, 310
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 426
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 56
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 2 cut(s) 161, 232
BlsI GCNGC 2 cut(s) 162, 233
Bme1390I CCNGG 2 cut(s) 68, 98
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 28, 54
BmrFI CCNGG 2 cut(s) 68, 98
BmrI ACTGGG 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 647
BpmI CTGGAG 1 cut(s) 665
Bpu10I CCTNAGC 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 53, 84
BsaJI CCNNGG 4 cut(s) 22, 48, 96, 141
BsaWI WCCGGW 2 cut(s) 39, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 336, 429
Bse118I RCCGGY 2 cut(s) 122, 257
Bse1I ACTGG 3 cut(s) 340, 602, 682
BseAI TCCGGA 2 cut(s) 39, 329
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 4 cut(s) 22, 48, 96, 141
BseGI GGATG 2 cut(s) 598, 639
BseLI CCNNNNNNNGG 3 cut(s) 103, 336, 429
BseMII CTCAG 2 cut(s) 239, 646
BseNI ACTGG 3 cut(s) 340, 602, 682
BseRI GAGGAG 4 cut(s) 116, 158, 458, 554
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 4 cut(s) 189, 255, 272, 650
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 3 cut(s) 29, 47, 71
BshNI GGYRCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 6 cut(s) 40, 98, 123, 207, 258, 330
BslI CCNNNNNNNGG 3 cut(s) 103, 336, 429
BsmAI GTCTC 1 cut(s) 626
BsnI GGCC 3 cut(s) 29, 47, 71
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 2 cut(s) 39, 329
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 4 cut(s) 108, 209, 306, 612
BspACI CCGC 4 cut(s) 120, 163, 229, 232
BspANI GGCC 3 cut(s) 29, 47, 71
BspCNI CTCAG 2 cut(s) 240, 645
BspEI TCCGGA 2 cut(s) 39, 329
BspFNI CGCG 4 cut(s) 189, 255, 272, 650
BspLI GGNNCC 2 cut(s) 28, 54
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 52
BsrFI RCCGGY 2 cut(s) 122, 257
BsrGI TGTACA 1 cut(s) 496
BsrI ACTGG 3 cut(s) 340, 602, 682
BssAI RCCGGY 2 cut(s) 122, 257
BssECI CCNNGG 4 cut(s) 22, 48, 96, 141
BssMI GATC 4 cut(s) 108, 209, 306, 612
BssNI GRCGYC 2 cut(s) 53, 84
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 322
BstACI GRCGYC 2 cut(s) 53, 84
BstAUI TGTACA 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 124, 187, 259
BstDEI CTNAG 2 cut(s) 248, 632
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 598, 639
BstFNI CGCG 4 cut(s) 189, 255, 272, 650
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 55, 257, 274
BstKTI GATC 4 cut(s) 111, 212, 309, 615
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 4 cut(s) 108, 209, 306, 612
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 3 cut(s) 77, 195, 294
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 66, 96
BstSFI CTRYAG 1 cut(s) 528
BstUI CGCG 4 cut(s) 189, 255, 272, 650
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 647
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 3 cut(s) 29, 47, 71
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 598, 639
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 3 cut(s) 124, 187, 259
CfoI GCGC 3 cut(s) 55, 257, 274
Cfr10I RCCGGY 2 cut(s) 122, 257
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 3 cut(s) 178, 278, 625
Csp6I GTAC 1 cut(s) 497
CviAII CATG 4 cut(s) 500, 593, 703, 739
CviJI RGCY 8 cut(s) 10, 29, 47, 71, 312, 388, 422, 562
CviKI_1 RGCY 8 cut(s) 10, 29, 47, 71, 312, 388, 422, 562
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 2 cut(s) 248, 632
DinI GGCGCC 1 cut(s) 54
DpnI GATC 4 cut(s) 110, 211, 308, 614
DpnII GATC 4 cut(s) 108, 209, 306, 612
EaeI YGGCCR 1 cut(s) 69
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 4 cut(s) 402, 423, 534, 601
EcoICRI GAGCTC 1 cut(s) 10
EcoRI GAATTC 2 cut(s) 325, 484
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 12
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 4 cut(s) 503, 596, 706, 742
FaiI YATR 9 cut(s) 305, 376, 411, 464, 501, 594, 673, 704, 740
FatI CATG 4 cut(s) 499, 592, 702, 738
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 161, 232
FokI GGATG 2 cut(s) 585, 626
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 161, 232
GlaI GCGC 3 cut(s) 54, 256, 273
GluI GCNGC 2 cut(s) 161, 232
GsuI CTGGAG 1 cut(s) 665
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 29, 47, 71
HapII CCGG 6 cut(s) 40, 98, 123, 207, 258, 330
HgaI GACGC 3 cut(s) 178, 278, 625
HhaI GCGC 3 cut(s) 55, 257, 274
Hin1I GRCGYC 2 cut(s) 53, 84
Hin1II CATG 4 cut(s) 503, 596, 706, 742
Hin6I GCGC 3 cut(s) 53, 255, 272
HinP1I GCGC 3 cut(s) 53, 255, 272
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 166, 173, 250, 371
HpaII CCGG 6 cut(s) 40, 98, 123, 207, 258, 330
HphI GGTGA 2 cut(s) 118, 268
Hpy166II GTNNAC 2 cut(s) 64, 550
Hpy188I TCNGA 6 cut(s) 142, 249, 355, 370, 442, 688
Hpy188III TCNNGA 5 cut(s) 40, 170, 316, 330, 643
Hpy8I GTNNAC 2 cut(s) 64, 550
HpyAV CCTTC 4 cut(s) 37, 190, 377, 447
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 472, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 195, 294
HpyF3I CTNAG 2 cut(s) 248, 632
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 2 cut(s) 53, 84
Hsp92II CATG 4 cut(s) 503, 596, 706, 742
HspAI GCGC 3 cut(s) 53, 255, 272
KasI GGCGCC 1 cut(s) 52
Kpn2I TCCGGA 2 cut(s) 39, 329
KroI GCCGGC 2 cut(s) 122, 257
KroNI GCCGGC 2 cut(s) 124, 259
Kzo9I GATC 4 cut(s) 108, 209, 306, 612
LmnI GCTCC 2 cut(s) 15, 684
Lsp1109I GCAGC 1 cut(s) 147
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 316
MalI GATC 4 cut(s) 110, 211, 308, 614
MboI GATC 4 cut(s) 108, 209, 306, 612
MboII GAAGA 3 cut(s) 26, 607, 647
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 4 cut(s) 325, 362, 484, 709
MluI ACGCGT 1 cut(s) 648
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 37
MreI CGCCGGCG 1 cut(s) 257
MroI TCCGGA 2 cut(s) 39, 329
MroNI GCCGGC 2 cut(s) 122, 257
MspI CCGG 6 cut(s) 40, 98, 123, 207, 258, 330
MspR9I CCNGG 2 cut(s) 68, 98
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 4 cut(s) 189, 255, 272, 650
MwoI GCNNNNNNNGC 3 cut(s) 77, 195, 294
NaeI GCCGGC 2 cut(s) 124, 259
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 1 cut(s) 98
NdeII GATC 4 cut(s) 108, 209, 306, 612
NgoMIV GCCGGC 2 cut(s) 122, 257
NlaIII CATG 4 cut(s) 503, 596, 706, 742
NlaIV GGNNCC 2 cut(s) 28, 54
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 503
PcsI WCGNNNNNNNCGW 4 cut(s) 69, 84, 189, 297
PdiI GCCGGC 2 cut(s) 124, 259
PfeI GAWTC 3 cut(s) 166, 173, 371
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 162, 233
PleI GAGTC 1 cut(s) 258
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 28, 54
PspPI GGNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 532
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
SacI GAGCTC 1 cut(s) 12
SalI GTCGAC 1 cut(s) 62
SatI GCNGC 2 cut(s) 161, 232
Sau3AI GATC 4 cut(s) 108, 209, 306, 612
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 68, 98
SduI GDGCHC 1 cut(s) 12
SfcI CTRYAG 1 cut(s) 528
SfoI GGCGCC 1 cut(s) 54
SgrAI CRCCGGYG 1 cut(s) 257
Sse9I AATT 4 cut(s) 325, 362, 484, 709
SsiI CCGC 4 cut(s) 120, 163, 229, 232
SspDI GGCGCC 1 cut(s) 52
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 66, 96
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 63, 87, 176
TaqII GACCGA 1 cut(s) 521
TasI AATT 4 cut(s) 325, 362, 484, 709
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 3 cut(s) 166, 173, 371
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 426, 609
Tth111I GACNNNGTC 1 cut(s) 152
XapI RAATTY 2 cut(s) 325, 484
XceI RCATGY 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 63
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.