Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000347

Physical Location & Seq

Genomic Coordinates Reverse (-)

54419655 .. 54423533

Gene Structure 3879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG391700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCAAGTAATCTCCATGGATCACTGCCTGATGGATCACTGCCTGAATCTTTGGGATCCCTTAAATATTTGGAAAGTCTTGGGTTCAGAAAGAACTCATTCTCGGGTCCTCTCCCAGCCACAATAGGAAATCTGTCACATTTGCAGGTCCTGGACCTGGCCTTCAACAACATGATGAATGGCACCATCCCAGAAAGTATCGGACAACTTTCAGAGTTGAGAGCATTGCTACTCTGGGAGTCTGGGGTGGTTCATGGGAAGCTTGGTGATCAAGAGGTCCTGGAGACACTTGACAATCTCGACAAAATGAAAGATCAGTTCCTTCTGTCTTCACTTGAATTAAAAATAGAAAAGAAAGAAGACAGAGAGAGAGAGTGTGTGAATTATTCTGAGTACTATTTTAGATTTGCTGATCAAGTTTGGAGCTTTTTACAAGGGTTTGCCATCTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

151

Amino Acids

17.01

Weight (kDa)

4.81

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	16 - 106	2.7e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica	Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis	pycom07g13980
rosa_chinensis	RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata	RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora	Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa	Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha	Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana	Rw1G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	182
AclWI	GGATC	4 cut(s)	28, 43, 51, 64
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	166, 338
AjnI	CCWGG	3 cut(s)	150, 156, 279
AluBI	AGCT	2 cut(s)	262, 426
AluI	AGCT	2 cut(s)	262, 426
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	28, 43, 51, 64
AlwNI	CAGNNNCTG	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	4 cut(s)	107, 148, 154, 277
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	4 cut(s)	107, 148, 154, 277
BamHI	GGATCC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	321, 366
BccI	CCATC	3 cut(s)	26, 194, 452
BciT130I	CCWGG	3 cut(s)	152, 158, 281
BclI	TGATCA	2 cut(s)	268, 412
BcoDI	GTCTC	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	136
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	3 cut(s)	152, 158, 281
Bme18I	GGWCC	4 cut(s)	107, 148, 154, 277
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	4 cut(s)	107, 148, 154, 277
BmiI	GGNNCC	3 cut(s)	58, 108, 184
BmrFI	CCNGG	3 cut(s)	152, 158, 281
BpiI	GAAGAC	2 cut(s)	321, 366
BpmI	CTGGAG	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	152, 158, 281
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	381
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	103
Bsp143I	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
Bsp19I	CCATGG	1 cut(s)	16
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	58, 108, 184
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	4 cut(s)	28, 43, 51, 64
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	3 cut(s)	152, 158, 281
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	6 cut(s)	23, 38, 59, 271, 316, 415
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
BstNI	CCWGG	3 cut(s)	152, 158, 281
BstSCI	CCNGG	3 cut(s)	150, 156, 279
BstV2I	GAAGAC	2 cut(s)	321, 366
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	2 cut(s)	23, 38
BtsIMutI	CAGTG	2 cut(s)	23, 38
BveI	ACCTGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	107, 148, 154, 277
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	3 cut(s)	17, 172, 254
CviJI	RGCY	4 cut(s)	119, 161, 262, 426
CviKI_1	RGCY	4 cut(s)	119, 161, 262, 426
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	6 cut(s)	22, 37, 58, 270, 315, 414
DpnII	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	4 cut(s)	107, 148, 154, 277
Eco88I	CYCGRG	1 cut(s)	103
EcoO109I	RGGNCCY	3 cut(s)	107, 148, 277
EcoRII	CCWGG	3 cut(s)	150, 156, 279
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	20, 175, 257
FaiI	YATR	3 cut(s)	18, 173, 255
FatI	CATG	3 cut(s)	16, 171, 253
FbaI	TGATCA	2 cut(s)	268, 412
FokI	GGATG	1 cut(s)	173
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	20, 175, 257
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	47, 239
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	4 cut(s)	89, 203, 214, 391
Hpy188III	TCNNGA	2 cut(s)	272, 299
HpyAV	CCTTC	2 cut(s)	172, 332
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	3 cut(s)	20, 175, 257
Ksp22I	TGATCA	2 cut(s)	268, 412
Kzo9I	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
LmnI	GCTCC	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	6 cut(s)	22, 37, 58, 270, 315, 414
MboI	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
MboII	GAAGA	2 cut(s)	321, 371
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	2 cut(s)	338, 382
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	120, 268
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	63, 341
MspR9I	CCNGG	3 cut(s)	152, 158, 281
MvaI	CCWGG	3 cut(s)	152, 158, 281
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
NlaIII	CATG	3 cut(s)	20, 175, 257
NlaIV	GGNNCC	3 cut(s)	58, 108, 184
NmuCI	GTSAC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	47
PfoI	TCCNGGA	2 cut(s)	150, 279
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PpuMI	RGGWCCY	3 cut(s)	107, 148, 277
Psp5II	RGGWCCY	3 cut(s)	107, 148, 277
Psp6I	CCWGG	3 cut(s)	150, 156, 279
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	3 cut(s)	150, 156, 279
PspN4I	GGNNCC	3 cut(s)	58, 108, 184
PspPI	GGNCC	4 cut(s)	107, 148, 154, 277
PspPPI	RGGWCCY	3 cut(s)	107, 148, 277
PstNI	CAGNNNCTG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	63, 341
Sau3AI	GATC	6 cut(s)	20, 35, 56, 268, 313, 412
Sau96I	GGNCC	4 cut(s)	107, 148, 154, 277
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	152, 158, 281
SetI	ASST	5 cut(s)	150, 159, 264, 279, 428
SinI	GGWCC	4 cut(s)	107, 148, 154, 277
Sse9I	AATT	2 cut(s)	338, 382
SspI	AATATT	1 cut(s)	68
StyD4I	CCNGG	3 cut(s)	150, 156, 279
StyI	CCWWGG	1 cut(s)	16
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	338, 382
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	63, 341
Tru9I	TTAA	2 cut(s)	63, 341
TscAI	CASTG	2 cut(s)	30, 45
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	3 cut(s)	191, 242, 323
TspRI	CASTG	2 cut(s)	30, 45
VpaK11BI	GGWCC	4 cut(s)	107, 148, 154, 277
XmnI	GAANNNNTTC	1 cut(s)	98
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.