RLG00000000740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000347
Physical Location & Seq
Reverse (-)
4657221 .. 4657852
632 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000740

Sequence Viewer

Length: 462 bp
ATGGCGGCGGCGAGGCTCCGTCTACTCCCCATGGTGGTCCAACGACACTCTAACCATGCTTGTGCTCCAACTGAACCAAGGCGCTGCTCTTCTCTTGAAGGCCGTGCCACCACTCATCGACCTGGCCAACTTCGCCAATGTCTCACGGATAAGGTATTCTTGCTGATTGTTGGCAACTCCATGATCTCTGAGGGGGACTTCGTTATGCTGTGGATTCCGGAGTTGACCTTCGCTCACATCATTTGCAACGTTCACGGATCGTTCGTTCTCAACCTAGGCCGCTTGTACTCCAATCTAAACCGCGCCGGCGACGATGGCGAGGATTTGATCAGCTTCGTGACTGTGAATTCCGGTCAGTACAACTTTAGTTTTGCTTTTCTTGAGTTGGTTCTTGGATGTGGAAATCAGTATAATGCTTTGTTGGGCGTGAGGCAGTATTGTGACAACACAATGCTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.06

Weight (kDa)

7.66

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 22
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 4 cut(s) 5, 8, 280, 301
AclI AACGTT 1 cut(s) 249
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 2 cut(s) 287, 359
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 3 cut(s) 100, 124, 277
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 346
AspA2I CCTAGG 1 cut(s) 274
AspLEI GCGC 2 cut(s) 84, 305
AspS9I GGNCC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 37
AvrII CCTAGG 1 cut(s) 274
BalI TGGCCA 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 4 cut(s) 6, 9, 85, 280
BlnI CCTAGG 1 cut(s) 274
BlsI GCNGC 4 cut(s) 7, 10, 86, 281
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 401
BsaJI CCNNGG 3 cut(s) 30, 77, 274
BsaWI WCCGGW 2 cut(s) 217, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 30, 77, 274
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 102, 126, 279
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 3 cut(s) 218, 306, 351
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 3 cut(s) 102, 126, 279
Bsp1286I GDGCHC 1 cut(s) 67
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 183, 257, 327
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 4 cut(s) 5, 8, 280, 301
BspANI GGCC 3 cut(s) 102, 126, 279
BspCNI CTCAG 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 17
BspPI GGATC 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 30, 77, 274
BssMI GATC 3 cut(s) 183, 257, 327
BssT1I CCWWGG 3 cut(s) 30, 77, 274
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 305
BstKTI GATC 3 cut(s) 186, 260, 330
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 183, 257, 327
BstMWI GCNNNNNNNGC 2 cut(s) 132, 315
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 3 cut(s) 102, 126, 279
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 307
CfoI GCGC 2 cut(s) 84, 305
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 286, 358
CviAII CATG 3 cut(s) 31, 56, 181
CviJI RGCY 5 cut(s) 16, 102, 126, 279, 333
CviKI_1 RGCY 5 cut(s) 16, 102, 126, 279, 333
CviQI GTAC 2 cut(s) 286, 358
DdeI CTNAG 1 cut(s) 189
DpnI GATC 3 cut(s) 185, 259, 329
DpnII GATC 3 cut(s) 183, 257, 327
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 3 cut(s) 30, 77, 274
Eco47I GGWCC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 30, 77, 274
ErhI CCWWGG 3 cut(s) 30, 77, 274
FaeI CATG 3 cut(s) 34, 59, 184
FaiI YATR 5 cut(s) 32, 57, 182, 206, 411
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 30, 55, 180
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 4 cut(s) 6, 9, 85, 280
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 4 cut(s) 6, 9, 85, 280
FspBI CTAG 1 cut(s) 275
GlaI GCGC 2 cut(s) 83, 304
GluI GCNGC 4 cut(s) 6, 9, 85, 280
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 3 cut(s) 102, 126, 279
HapII CCGG 3 cut(s) 218, 306, 351
HhaI GCGC 2 cut(s) 84, 305
Hin1II CATG 3 cut(s) 34, 59, 184
Hin6I GCGC 2 cut(s) 82, 303
HinP1I GCGC 2 cut(s) 82, 303
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 1 cut(s) 214
HpaII CCGG 3 cut(s) 218, 306, 351
Hpy166II GTNNAC 3 cut(s) 23, 225, 253
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 4 cut(s) 95, 218, 337, 380
Hpy8I GTNNAC 3 cut(s) 23, 225, 253
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 92, 238
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 315
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 3 cut(s) 34, 59, 184
HspAI GCGC 2 cut(s) 82, 303
Kpn2I TCCGGA 1 cut(s) 217
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 183, 257, 327
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 21, 70
LpnPI CCDG 5 cut(s) 108, 135, 231, 319, 364
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 337, 440
MalI GATC 3 cut(s) 185, 259, 329
MboI GATC 3 cut(s) 183, 257, 327
MboII GAAGA 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 1 cut(s) 346
MluNI TGGCCA 1 cut(s) 126
MmeI TCCRAC 2 cut(s) 64, 92
MnlI CCTC 4 cut(s) 6, 184, 313, 423
Mox20I TGGCCA 1 cut(s) 126
MreI CGCCGGCG 1 cut(s) 305
MroI TCCGGA 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 126
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 126
MspI CCGG 3 cut(s) 218, 306, 351
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 132, 315
NaeI GCCGGC 1 cut(s) 307
NcoI CCATGG 1 cut(s) 30
NdeII GATC 3 cut(s) 183, 257, 327
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 3 cut(s) 34, 59, 184
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 2 cut(s) 337, 440
PciSI GCTCTTC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 7, 10, 86, 281
Psp1406I AACGTT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 2 cut(s) 287, 359
RsaNI GTAC 2 cut(s) 286, 358
RseI CAYNNNNRTG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 4 cut(s) 6, 9, 85, 280
Sau3AI GATC 3 cut(s) 183, 257, 327
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 67
SetI ASST 6 cut(s) 124, 156, 230, 252, 276, 335
SgrAI CRCCGGYG 1 cut(s) 305
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 1 cut(s) 346
SsiI CCGC 4 cut(s) 5, 8, 280, 301
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 3 cut(s) 30, 77, 274
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 118
TasI AATT 1 cut(s) 346
TatI WGTACW 2 cut(s) 285, 357
TauI GCSGC 3 cut(s) 8, 11, 282
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 2 cut(s) 337, 440
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 2 cut(s) 337, 440
TspGWI ACGGA 3 cut(s) 8, 161, 270
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 346
XmaJI CCTAGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.